RNA–Protein interactions for RNA: ENST00000264010.8

CTCF-201, Transcript of CCCTC-binding factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTCF, Length 3,939 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-201ENST00000264010 ZNF75DP51815 510 aa18.72■□□□□ 0.59
CTCF-201ENST00000264010 CLEC4GQ6UXB4 293 aa18.72■□□□□ 0.59
CTCF-201ENST00000264010 SPATA31A1Q5TZJ5 1347 aa18.72■□□□□ 0.59
CTCF-201ENST00000264010 U2AF2P26368 475 aaKnown RBP eCLIP18.72■□□□□ 0.597e-12■■■■■ 54.7
CTCF-201ENST00000264010 COL9A3Q14050 684 aaPredicted RBP18.72■□□□□ 0.59
CTCF-201ENST00000264010 ALX1Q15699 326 aa18.72■□□□□ 0.59
CTCF-201ENST00000264010 TBC1D10CQ8IV04 446 aa18.72■□□□□ 0.59
CTCF-201ENST00000264010 NOL12Q9UGY1 213 aaKnown RBP eCLIP18.72■□□□□ 0.59
CTCF-201ENST00000264010 V9GYY5 206 aaPredicted RBP18.72■□□□□ 0.59
CTCF-201ENST00000264010 AGXT2Q9BYV1 514 aa18.71■□□□□ 0.59
CTCF-201ENST00000264010 CTDNEP1O95476 244 aa18.71■□□□□ 0.59
CTCF-201ENST00000264010 PDE4BQ07343 736 aa18.71■□□□□ 0.59
CTCF-201ENST00000264010 C16orf45Q96MC5 204 aaPredicted RBP18.71■□□□□ 0.59
CTCF-201ENST00000264010 POLR3EQ9NVU0 708 aa18.71■□□□□ 0.59
CTCF-201ENST00000264010 CLIC4Q9Y696 253 aa18.71■□□□□ 0.59
CTCF-201ENST00000264010 UBN2Q6ZU65 1347 aa18.7■□□□□ 0.58
CTCF-201ENST00000264010 RPS8P62241 208 aaKnown RBP18.7■□□□□ 0.58
CTCF-201ENST00000264010 PPARAQ07869 468 aa18.7■□□□□ 0.58
CTCF-201ENST00000264010 C17orf53Q8N3J3 647 aaPredicted RBP18.7■□□□□ 0.58
CTCF-201ENST00000264010 PRIMPOLQ96LW4 560 aa18.7■□□□□ 0.58
CTCF-201ENST00000264010 C5P01031 1676 aa18.7■□□□□ 0.58
CTCF-201ENST00000264010 DEXIO95424 95 aa18.7■□□□□ 0.58
CTCF-201ENST00000264010 HIBADHP31937 336 aaKnown RBP18.7■□□□□ 0.58
CTCF-201ENST00000264010 TERF1P54274 439 aa18.7■□□□□ 0.58
CTCF-201ENST00000264010 MTMR7Q9Y216 660 aa18.7■□□□□ 0.58
CTCF-201ENST00000264010 LINC00301Q8NCQ3 95 aa18.7■□□□□ 0.58
CTCF-201ENST00000264010 TDRD7Q8NHU6 1098 aaKnown RBP18.7■□□□□ 0.58
CTCF-201ENST00000264010 CAMTA2O94983 1202 aa18.69■□□□□ 0.58
CTCF-201ENST00000264010 ZNF202O95125 648 aa18.69■□□□□ 0.58
CTCF-201ENST00000264010 CALM1P0DP23 149 aa18.69■□□□□ 0.58
CTCF-201ENST00000264010 CALM2P0DP24 149 aa18.69■□□□□ 0.58
CTCF-201ENST00000264010 CALM3P0DP25 149 aa18.69■□□□□ 0.58
CTCF-201ENST00000264010 GSDMDP57764 484 aa18.69■□□□□ 0.58
CTCF-201ENST00000264010 ERFEQ4G0M1 354 aa18.69■□□□□ 0.58
CTCF-201ENST00000264010 MARCH10Q8NA82 808 aaPredicted RBP18.69■□□□□ 0.58
CTCF-201ENST00000264010 SLC4A9Q96Q91 983 aa18.69■□□□□ 0.58
CTCF-201ENST00000264010 CCNL1Q9UK58 526 aaPredicted RBP18.69■□□□□ 0.58
CTCF-201ENST00000264010 LIFRP42702 1097 aa18.69■□□□□ 0.58
CTCF-201ENST00000264010 KIF23Q02241 960 aaPredicted RBP18.69■□□□□ 0.58
CTCF-201ENST00000264010 MKNK2Q9HBH9 465 aa18.69■□□□□ 0.58
CTCF-201ENST00000264010 CALCOCO1Q9P1Z2 691 aa18.69■□□□□ 0.58
CTCF-201ENST00000264010 TSPY2A6NKD2 308 aa18.69■□□□□ 0.58
CTCF-201ENST00000264010 NOM1Q5C9Z4 860 aaKnown RBP18.69■□□□□ 0.58
CTCF-201ENST00000264010 LCORLQ8N3X6 602 aa18.69■□□□□ 0.58
CTCF-201ENST00000264010 GTPBP4Q9BZE4 634 aaKnown RBP18.69■□□□□ 0.58
CTCF-201ENST00000264010 PRKAB2O43741 272 aa18.68■□□□□ 0.58
CTCF-201ENST00000264010 ISM2Q6H9L7 571 aa18.68■□□□□ 0.58
CTCF-201ENST00000264010 CYB5R4Q7L1T6 521 aa18.68■□□□□ 0.58
CTCF-201ENST00000264010 MNS1Q8NEH6 495 aa18.68■□□□□ 0.58
CTCF-201ENST00000264010 ZSWIM5Q9P217 1185 aa18.68■□□□□ 0.58
CTCF-201ENST00000264010 SETQ01105 290 aaPredicted RBP18.68■□□□□ 0.58
CTCF-201ENST00000264010 PPP2R5BQ15173 497 aa18.68■□□□□ 0.58
CTCF-201ENST00000264010 DIS3L2Q8IYB7 885 aaKnown RBP18.68■□□□□ 0.58
CTCF-201ENST00000264010 KRI1Q8N9T8 703 aaKnown RBP18.68■□□□□ 0.58
CTCF-201ENST00000264010 RPGRQ92834 1020 aaKnown RBP18.68■□□□□ 0.58
CTCF-201ENST00000264010 KCPQ6ZWJ8 1503 aa18.68■□□□□ 0.58
CTCF-201ENST00000264010 LDHCP07864 332 aa18.68■□□□□ 0.58
CTCF-201ENST00000264010 INTS5Q6P9B9 1019 aaKnown RBP18.68■□□□□ 0.58
CTCF-201ENST00000264010 BAG3O95817 575 aa18.67■□□□□ 0.58
CTCF-201ENST00000264010 CMA1P23946 247 aa18.67■□□□□ 0.58
CTCF-201ENST00000264010 RILPL1Q5EBL4 403 aa18.67■□□□□ 0.58
CTCF-201ENST00000264010 ZNF654Q8IZM8 581 aa18.67■□□□□ 0.58
CTCF-201ENST00000264010 CUTAO60888 179 aa18.67■□□□□ 0.58
CTCF-201ENST00000264010 ANTXR2P58335 489 aa18.67■□□□□ 0.58
CTCF-201ENST00000264010 SDR42E1Q8WUS8 393 aa18.67■□□□□ 0.58
CTCF-201ENST00000264010 KIF20AO95235 890 aa18.67■□□□□ 0.58
CTCF-201ENST00000264010 SFPQP23246 707 aaKnown RBP eCLIP18.67■□□□□ 0.58
CTCF-201ENST00000264010 KIF5BP33176 963 aa18.67■□□□□ 0.58
CTCF-201ENST00000264010 TXLNAP40222 546 aa18.67■□□□□ 0.58
CTCF-201ENST00000264010 NDUFA8P51970 172 aa18.67■□□□□ 0.58
CTCF-201ENST00000264010 DEF6Q9H4E7 631 aa18.67■□□□□ 0.58
CTCF-201ENST00000264010 KIAA1468Q9P260 1216 aa18.67■□□□□ 0.58
CTCF-201ENST00000264010 CFAP100Q494V2 611 aa18.66■□□□□ 0.58
CTCF-201ENST00000264010 ZNF287Q9HBT7 754 aa18.66■□□□□ 0.58
CTCF-201ENST00000264010 ITPK1Q13572 414 aa18.66■□□□□ 0.58
CTCF-201ENST00000264010 SLC39A14Q15043 492 aa18.66■□□□□ 0.58
CTCF-201ENST00000264010 KANK3Q6NY19 840 aa18.66■□□□□ 0.58
CTCF-201ENST00000264010 CREBRFQ8IUR6 639 aa18.66■□□□□ 0.58
CTCF-201ENST00000264010 FBXL16Q8N461 479 aa18.66■□□□□ 0.58
CTCF-201ENST00000264010 RBM28Q9NW13 759 aaKnown RBP18.66■□□□□ 0.58
CTCF-201ENST00000264010 NLRP5P59047 1200 aa18.66■□□□□ 0.58
CTCF-201ENST00000264010 GSTO1P78417 241 aa18.66■□□□□ 0.58
CTCF-201ENST00000264010 BSDC1Q9NW68 430 aaPredicted RBP18.66■□□□□ 0.58
CTCF-201ENST00000264010 TFCP2L1Q9NZI6 479 aa18.66■□□□□ 0.58
CTCF-201ENST00000264010 COL18A1P39060 1754 aa18.66■□□□□ 0.58
CTCF-201ENST00000264010 TRIM75PA6NK02 468 aa18.65■□□□□ 0.58
CTCF-201ENST00000264010 BMP15O95972 392 aa18.65■□□□□ 0.58
CTCF-201ENST00000264010 PFKFB1P16118 471 aa18.65■□□□□ 0.58
CTCF-201ENST00000264010 ANKRD20A12PQ8NF67 263 aa18.65■□□□□ 0.58
CTCF-201ENST00000264010 NEDD4P46934 1319 aa18.65■□□□□ 0.58
CTCF-201ENST00000264010 KCNQ2O43526 872 aa18.65■□□□□ 0.58
CTCF-201ENST00000264010 GTF2A1P52655 376 aaPredicted RBP18.65■□□□□ 0.58
CTCF-201ENST00000264010 ZNF444Q8N0Y2 327 aaPredicted RBP18.65■□□□□ 0.58
CTCF-201ENST00000264010 FANCBQ8NB91 859 aa18.65■□□□□ 0.58
CTCF-201ENST00000264010 ERCC4Q92889 916 aaPredicted RBP18.65■□□□□ 0.58
CTCF-201ENST00000264010 FUCA2Q9BTY2 467 aa18.65■□□□□ 0.58
CTCF-201ENST00000264010 TPM1P09493 284 aa18.65■□□□□ 0.58
CTCF-201ENST00000264010 FDPSP14324 419 aaKnown RBP18.65■□□□□ 0.58
CTCF-201ENST00000264010 FGFR2P21802 821 aa18.65■□□□□ 0.58
CTCF-201ENST00000264010 EVCP57679 992 aa18.65■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms