RNA–Protein interactions for RNA: ENST00000262539.7

PTPN3-201, Transcript of protein tyrosine phosphatase, non-receptor type 3, humanhuman

TSL 5 BASIC

Gene PTPN3, Length 6,832 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN3-201ENST00000262539 PTH1RQ03431 593 aa9.46□□□□□ -0.9
PTPN3-201ENST00000262539 SBK1Q52WX2 424 aa9.46□□□□□ -0.9
PTPN3-201ENST00000262539 IFNL3Q8IZI9 196 aa9.46□□□□□ -0.9
PTPN3-201ENST00000262539 SMARCC2Q8TAQ2 1214 aa9.46□□□□□ -0.9
PTPN3-201ENST00000262539 COA1Q9GZY4 146 aa9.46□□□□□ -0.9
PTPN3-201ENST00000262539 HDAC9Q9UKV0 1011 aa9.46□□□□□ -0.9
PTPN3-201ENST00000262539 PDZRN4Q6ZMN7 1036 aaPredicted RBP9.45□□□□□ -0.9
PTPN3-201ENST00000262539 ORC4O43929 436 aa9.45□□□□□ -0.9
PTPN3-201ENST00000262539 FGAP02671 866 aa9.45□□□□□ -0.9
PTPN3-201ENST00000262539 SH2D4AQ9H788 454 aa9.45□□□□□ -0.9
PTPN3-201ENST00000262539 GNA11P29992 359 aa9.45□□□□□ -0.9
PTPN3-201ENST00000262539 FAM160A1Q05DH4 1040 aa9.45□□□□□ -0.9
PTPN3-201ENST00000262539 PODNQ7Z5L7 613 aa9.45□□□□□ -0.9
PTPN3-201ENST00000262539 TFCP2L1Q9NZI6 479 aa9.45□□□□□ -0.9
PTPN3-201ENST00000262539 MYO3BQ8WXR4 1341 aa9.45□□□□□ -0.9
PTPN3-201ENST00000262539 C6orf229H3BNL8 230 aa9.45□□□□□ -0.9
PTPN3-201ENST00000262539 NPR1P16066 1061 aa9.45□□□□□ -0.9
PTPN3-201ENST00000262539 HDLBPQ00341 1268 aaKnown RBP9.45□□□□□ -0.9
PTPN3-201ENST00000262539 ZSCAN30Q86W11 494 aa9.45□□□□□ -0.9
PTPN3-201ENST00000262539 ZNF594Q96JF6 807 aaPredicted RBP9.45□□□□□ -0.9
PTPN3-201ENST00000262539 PARP4Q9UKK3 1724 aaKnown RBP9.45□□□□□ -0.9
PTPN3-201ENST00000262539 ANKRD62A6NC57 917 aa9.45□□□□□ -0.9
PTPN3-201ENST00000262539 POLR3DP05423 398 aaPredicted RBP9.45□□□□□ -0.9
PTPN3-201ENST00000262539 DESP17661 470 aa9.45□□□□□ -0.9
PTPN3-201ENST00000262539 PUS3Q9BZE2 481 aaKnown RBP9.45□□□□□ -0.9
PTPN3-201ENST00000262539 KAT14Q9H8E8 782 aa9.45□□□□□ -0.9
PTPN3-201ENST00000262539 LMBRD1Q9NUN5 540 aa9.45□□□□□ -0.9
PTPN3-201ENST00000262539 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.44□□□□□ -0.9
PTPN3-201ENST00000262539 PHKA1P46020 1223 aa9.44□□□□□ -0.9
PTPN3-201ENST00000262539 RCOR1Q9UKL0 485 aa9.44□□□□□ -0.9
PTPN3-201ENST00000262539 MYO6Q9UM54 1294 aa9.44□□□□□ -0.9
PTPN3-201ENST00000262539 TSPY2A6NKD2 308 aa9.44□□□□□ -0.9
PTPN3-201ENST00000262539 STAG1Q8WVM7 1258 aa9.44□□□□□ -0.9
PTPN3-201ENST00000262539 DRC1Q96MC2 740 aa9.44□□□□□ -0.9
PTPN3-201ENST00000262539 HLFQ16534 295 aa9.44□□□□□ -0.9
PTPN3-201ENST00000262539 INTS5Q6P9B9 1019 aaKnown RBP9.44□□□□□ -0.9
PTPN3-201ENST00000262539 FERMT2Q96AC1 680 aa9.44□□□□□ -0.9
PTPN3-201ENST00000262539 POLR3EQ9NVU0 708 aa9.44□□□□□ -0.9
PTPN3-201ENST00000262539 ADAMTS7Q9UKP4 1686 aa9.44□□□□□ -0.9
PTPN3-201ENST00000262539 SERPINB2P05120 415 aa9.44□□□□□ -0.9
PTPN3-201ENST00000262539 NEFHP12036 1026 aa9.44□□□□□ -0.9
PTPN3-201ENST00000262539 TIGD1Q96MW7 591 aa9.44□□□□□ -0.9
PTPN3-201ENST00000262539 ANAPC4Q9UJX5 808 aa9.44□□□□□ -0.9
PTPN3-201ENST00000262539 NSFL1CQ9UNZ2 370 aaKnown RBP9.44□□□□□ -0.9
PTPN3-201ENST00000262539 CLEC11AQ9Y240 323 aa9.44□□□□□ -0.9
PTPN3-201ENST00000262539 TRIM75PA6NK02 468 aa9.44□□□□□ -0.9
PTPN3-201ENST00000262539 RASGRF1Q13972 1273 aa9.44□□□□□ -0.9
PTPN3-201ENST00000262539 MAGEB6Q8N7X4 407 aa9.44□□□□□ -0.9
PTPN3-201ENST00000262539 SMARCA1P28370 1054 aa9.43□□□□□ -0.9
PTPN3-201ENST00000262539 EXOSC10Q01780 885 aaKnown RBP9.43□□□□□ -0.9
PTPN3-201ENST00000262539 OSBP2Q969R2 916 aa9.43□□□□□ -0.9
PTPN3-201ENST00000262539 ALG1Q9BT22 464 aa9.43□□□□□ -0.9
PTPN3-201ENST00000262539 MORC2Q9Y6X9 1032 aaPredicted RBP9.43□□□□□ -0.9
PTPN3-201ENST00000262539 FSD2A1L4K1 749 aa9.43□□□□□ -0.9
PTPN3-201ENST00000262539 PPP4CP60510 307 aa9.43□□□□□ -0.9
PTPN3-201ENST00000262539 STIM1Q13586 685 aa9.43□□□□□ -0.9
PTPN3-201ENST00000262539 FBXO33Q7Z6M2 555 aa9.43□□□□□ -0.9
PTPN3-201ENST00000262539 SP8Q8IXZ3 490 aa9.43□□□□□ -0.9
PTPN3-201ENST00000262539 MB21D2Q8IYB1 491 aaPredicted RBP9.43□□□□□ -0.9
PTPN3-201ENST00000262539 NUP133Q8WUM0 1156 aa9.43□□□□□ -0.9
PTPN3-201ENST00000262539 DHX36Q9H2U1 1008 aaKnown RBP9.43□□□□□ -0.9
PTPN3-201ENST00000262539 TLR7Q9NYK1 1049 aaKnown RBP9.43□□□□□ -0.9
PTPN3-201ENST00000262539 STX1AQ16623 288 aa9.43□□□□□ -0.9
PTPN3-201ENST00000262539 RCSD1Q6JBY9 416 aa9.43□□□□□ -0.9
PTPN3-201ENST00000262539 ARHGAP30Q7Z6I6 1101 aaPredicted RBP9.43□□□□□ -0.9
PTPN3-201ENST00000262539 SEPT11Q9NVA2 429 aaKnown RBP9.43□□□□□ -0.9
PTPN3-201ENST00000262539 CCDC194A0A1B0GVG4 234 aa9.43□□□□□ -0.9
PTPN3-201ENST00000262539 SPTLC2O15270 562 aa9.43□□□□□ -0.9
PTPN3-201ENST00000262539 CRACR2BQ8N4Y2 399 aaPredicted RBP9.43□□□□□ -0.9
PTPN3-201ENST00000262539 SWAP70Q9UH65 585 aa9.43□□□□□ -0.9
PTPN3-201ENST00000262539 GSDMDP57764 484 aa9.43□□□□□ -0.9
PTPN3-201ENST00000262539 PPARAQ07869 468 aa9.43□□□□□ -0.9
PTPN3-201ENST00000262539 TXLNBQ8N3L3 684 aa9.43□□□□□ -0.9
PTPN3-201ENST00000262539 MAGEF1Q9HAY2 307 aa9.43□□□□□ -0.9
PTPN3-201ENST00000262539 SEC63Q9UGP8 760 aaKnown RBP9.43□□□□□ -0.9
PTPN3-201ENST00000262539 ATRNO75882 1429 aa9.43□□□□□ -0.9
PTPN3-201ENST00000262539 MYSM1Q5VVJ2 828 aa9.42□□□□□ -0.9
PTPN3-201ENST00000262539 APOA5Q6Q788 366 aa9.42□□□□□ -0.9
PTPN3-201ENST00000262539 TRIML1Q8N9V2 468 aa9.42□□□□□ -0.9
PTPN3-201ENST00000262539 TANGO6Q9C0B7 1094 aa9.42□□□□□ -0.9
PTPN3-201ENST00000262539 DNAI2Q9GZS0 605 aa9.42□□□□□ -0.9
PTPN3-201ENST00000262539 CUTAO60888 179 aa9.42□□□□□ -0.9
PTPN3-201ENST00000262539 HSP90AA2PQ14568 343 aaPredicted RBP9.42□□□□□ -0.9
PTPN3-201ENST00000262539 ME3Q16798 604 aa9.42□□□□□ -0.9
PTPN3-201ENST00000262539 FAM163AQ96GL9 167 aaPredicted RBP9.42□□□□□ -0.9
PTPN3-201ENST00000262539 PDIA3P30101 505 aaKnown RBP9.42□□□□□ -0.9
PTPN3-201ENST00000262539 IFIT1BQ5T764 474 aaKnown RBP9.42□□□□□ -0.9
PTPN3-201ENST00000262539 CCDC125Q86Z20 511 aa9.42□□□□□ -0.9
PTPN3-201ENST00000262539 PIBF1Q8WXW3 757 aa9.42□□□□□ -0.9
PTPN3-201ENST00000262539 JARID2Q92833 1246 aaPredicted RBP9.42□□□□□ -0.9
PTPN3-201ENST00000262539 VPS33BQ9H267 617 aa9.42□□□□□ -0.9
PTPN3-201ENST00000262539 EHMT1Q9H9B1 1298 aa9.42□□□□□ -0.9
PTPN3-201ENST00000262539 CABP5Q9NP86 173 aa9.42□□□□□ -0.9
PTPN3-201ENST00000262539 MINDY4BA8MYZ0 360 aa9.42□□□□□ -0.9
PTPN3-201ENST00000262539 RANBP6O60518 1105 aaKnown RBP9.42□□□□□ -0.9
PTPN3-201ENST00000262539 ADALQ6DHV7 355 aa9.42□□□□□ -0.9
PTPN3-201ENST00000262539 MPNDQ8N594 471 aa9.42□□□□□ -0.9
PTPN3-201ENST00000262539 MRIQ9BWK5 157 aa9.42□□□□□ -0.9
PTPN3-201ENST00000262539 RTEL1Q9NZ71 1219 aa9.42□□□□□ -0.9
PTPN3-201ENST00000262539 PPP4R3AQ6IN85 833 aa9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms