RNA–Protein interactions for RNA: ENST00000258733.8

GPNMB-201, Transcript of glycoprotein nmb, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene GPNMB, Length 2,862 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-201ENST00000258733 CDK5RAP3Q96JB5 506 aa8.75□□□□□ -1.01
GPNMB-201ENST00000258733 CEP295NLQ96MC4 621 aa8.75□□□□□ -1.01
GPNMB-201ENST00000258733 VCX3BQ9H321 246 aa8.75□□□□□ -1.01
GPNMB-201ENST00000258733 AS3MTQ9HBK9 375 aa8.75□□□□□ -1.01
GPNMB-201ENST00000258733 LUC7LQ9NQ29 371 aaKnown RBP8.75□□□□□ -1.01
GPNMB-201ENST00000258733 AATFQ9NY61 560 aaKnown RBP eCLIP8.75□□□□□ -1.01
GPNMB-201ENST00000258733 RTEL1-TNFRSF6BF6WH68 1400 aa8.75□□□□□ -1.01
GPNMB-201ENST00000258733 NUP160Q12769 1436 aa8.75□□□□□ -1.01
GPNMB-201ENST00000258733 FGD6Q6ZV73 1430 aa8.75□□□□□ -1.01
GPNMB-201ENST00000258733 CASTP20810 708 aaKnown RBP8.75□□□□□ -1.01
GPNMB-201ENST00000258733 FUT4P22083 530 aa8.75□□□□□ -1.01
GPNMB-201ENST00000258733 CBX3Q13185 183 aa8.75□□□□□ -1.01
GPNMB-201ENST00000258733 RASA2Q15283 850 aa8.75□□□□□ -1.01
GPNMB-201ENST00000258733 ERCC6LQ2NKX8 1250 aa8.75□□□□□ -1.01
GPNMB-201ENST00000258733 SPDYCQ5MJ68 293 aa8.75□□□□□ -1.01
GPNMB-201ENST00000258733 BPHLQ86WA6 291 aaPredicted RBP8.75□□□□□ -1.01
GPNMB-201ENST00000258733 GALNT15Q8N3T1 639 aa8.75□□□□□ -1.01
GPNMB-201ENST00000258733 SUN5Q8TC36 379 aa8.75□□□□□ -1.01
GPNMB-201ENST00000258733 ATRIPQ8WXE1 791 aa8.75□□□□□ -1.01
GPNMB-201ENST00000258733 TMX3Q96JJ7 454 aa8.75□□□□□ -1.01
GPNMB-201ENST00000258733 ZMAT2Q96NC0 199 aaKnown RBP8.75□□□□□ -1.01
GPNMB-201ENST00000258733 RPS6KC1Q96S38 1066 aa8.75□□□□□ -1.01
GPNMB-201ENST00000258733 MAP3K14Q99558 947 aa8.75□□□□□ -1.01
GPNMB-201ENST00000258733 NACAP1Q9BZK3 213 aa8.75□□□□□ -1.01
GPNMB-201ENST00000258733 PHF24Q9UPV7 400 aa8.75□□□□□ -1.01
GPNMB-201ENST00000258733 SBNO2Q9Y2G9 1366 aa8.74□□□□□ -1.01
GPNMB-201ENST00000258733 ELL2O00472 640 aaPredicted RBP8.74□□□□□ -1.01
GPNMB-201ENST00000258733 FOXD2O60548 495 aaPredicted RBP8.74□□□□□ -1.01
GPNMB-201ENST00000258733 GNAT1P11488 350 aa8.74□□□□□ -1.01
GPNMB-201ENST00000258733 MCM3P25205 808 aa8.74□□□□□ -1.01
GPNMB-201ENST00000258733 MCM2P49736 904 aa8.74□□□□□ -1.01
GPNMB-201ENST00000258733 KCTD2Q14681 263 aa8.74□□□□□ -1.01
GPNMB-201ENST00000258733 CCDC57Q2TAC2 916 aa8.74□□□□□ -1.01
GPNMB-201ENST00000258733 KAZNQ674X7 775 aa8.74□□□□□ -1.01
GPNMB-201ENST00000258733 ZNF280CQ8ND82 737 aa8.74□□□□□ -1.01
GPNMB-201ENST00000258733 HVCN1Q96D96 273 aa8.74□□□□□ -1.01
GPNMB-201ENST00000258733 IFT57Q9NWB7 429 aa8.74□□□□□ -1.01
GPNMB-201ENST00000258733 TMED5Q9Y3A6 229 aa8.74□□□□□ -1.01
GPNMB-201ENST00000258733 ZSCAN21Q9Y5A6 473 aaPredicted RBP8.74□□□□□ -1.01
GPNMB-201ENST00000258733 HSPA8P11142 646 aaKnown RBP8.74□□□□□ -1.01
GPNMB-201ENST00000258733 CCT8P50990 548 aa8.74□□□□□ -1.01
GPNMB-201ENST00000258733 OXCT1P55809 520 aa8.74□□□□□ -1.01
GPNMB-201ENST00000258733 PHEXP78562 749 aa8.74□□□□□ -1.01
GPNMB-201ENST00000258733 AMPD3Q01432 767 aa8.74□□□□□ -1.01
GPNMB-201ENST00000258733 LRP8Q14114 963 aa8.74□□□□□ -1.01
GPNMB-201ENST00000258733 CEP85LQ5SZL2 805 aa8.74□□□□□ -1.01
GPNMB-201ENST00000258733 MSL1Q68DK7 614 aa8.74□□□□□ -1.01
GPNMB-201ENST00000258733 IQCEQ6IPM2 695 aa8.74□□□□□ -1.01
GPNMB-201ENST00000258733 ALKBH2Q6NS38 261 aa8.74□□□□□ -1.01
GPNMB-201ENST00000258733 CEP57Q86XR8 500 aa8.74□□□□□ -1.01
GPNMB-201ENST00000258733 TSC22D3Q99576 134 aa8.74□□□□□ -1.01
GPNMB-201ENST00000258733 SLC5A4Q9NY91 659 aa8.74□□□□□ -1.01
GPNMB-201ENST00000258733 MIS18AQ9NYP9 233 aa8.74□□□□□ -1.01
GPNMB-201ENST00000258733 ITGB1BP2Q9UKP3 347 aa8.74□□□□□ -1.01
GPNMB-201ENST00000258733 CARD8Q9Y2G2 431 aa8.74□□□□□ -1.01
GPNMB-201ENST00000258733 GOLGA6L9A6NEM1 432 aa8.73□□□□□ -1.01
GPNMB-201ENST00000258733 GOLGA8AA7E2F4 631 aa8.73□□□□□ -1.01
GPNMB-201ENST00000258733 EVI5O60447 810 aa8.73□□□□□ -1.01
GPNMB-201ENST00000258733 STAM2O75886 525 aa8.73□□□□□ -1.01
GPNMB-201ENST00000258733 NUCB1Q02818 461 aa8.73□□□□□ -1.01
GPNMB-201ENST00000258733 SLMAPQ14BN4 828 aa8.73□□□□□ -1.01
GPNMB-201ENST00000258733 SHROOM1Q2M3G4 852 aaPredicted RBP8.73□□□□□ -1.01
GPNMB-201ENST00000258733 CREB3L3Q68CJ9 461 aa8.73□□□□□ -1.01
GPNMB-201ENST00000258733 ZBTB8BQ8NAP8 495 aaPredicted RBP8.73□□□□□ -1.01
GPNMB-201ENST00000258733 GSDMBQ8TAX9 411 aa8.73□□□□□ -1.01
GPNMB-201ENST00000258733 IER2Q9BTL4 223 aa8.73□□□□□ -1.01
GPNMB-201ENST00000258733 WDR70Q9NW82 654 aa8.73□□□□□ -1.01
GPNMB-201ENST00000258733 GALNT8Q9NY28 637 aa8.73□□□□□ -1.01
GPNMB-201ENST00000258733 CAPN7Q9Y6W3 813 aa8.73□□□□□ -1.01
GPNMB-201ENST00000258733 UACAQ9BZF9 1416 aa8.73□□□□□ -1.01
GPNMB-201ENST00000258733 CCDC18Q5T9S5 1454 aa8.73□□□□□ -1.01
GPNMB-201ENST00000258733 SENP3-EIF4A1A0A087X0R7 540 aa8.73□□□□□ -1.01
GPNMB-201ENST00000258733 AKR1B10O60218 316 aa8.73□□□□□ -1.01
GPNMB-201ENST00000258733 NEMFO60524 1076 aa8.73□□□□□ -1.01
GPNMB-201ENST00000258733 SASH3O75995 380 aa8.73□□□□□ -1.01
GPNMB-201ENST00000258733 TBC1D8O95759 1140 aa8.73□□□□□ -1.01
GPNMB-201ENST00000258733 HOXD12P35452 270 aa8.73□□□□□ -1.01
GPNMB-201ENST00000258733 PIK3CAP42336 1068 aa8.73□□□□□ -1.01
GPNMB-201ENST00000258733 SH2D4BQ5SQS7 431 aa8.73□□□□□ -1.01
GPNMB-201ENST00000258733 C10orf62Q5T681 223 aaPredicted RBP8.73□□□□□ -1.01
GPNMB-201ENST00000258733 CCDC121Q6ZUS5 278 aa8.73□□□□□ -1.01
GPNMB-201ENST00000258733 LILRB1Q8NHL6 650 aaPredicted RBP8.73□□□□□ -1.01
GPNMB-201ENST00000258733 GOLGA1Q92805 767 aa8.73□□□□□ -1.01
GPNMB-201ENST00000258733 ZNF512BQ96KM6 892 aaPredicted RBP8.73□□□□□ -1.01
GPNMB-201ENST00000258733 BICC1Q9H694 974 aaKnown RBP8.73□□□□□ -1.01
GPNMB-201ENST00000258733 TBK1Q9UHD2 729 aa8.73□□□□□ -1.01
GPNMB-201ENST00000258733 CORO1CQ9ULV4 474 aaPredicted RBP8.73□□□□□ -1.01
GPNMB-201ENST00000258733 EPB41L3Q9Y2J2 1087 aaPredicted RBP8.73□□□□□ -1.01
GPNMB-201ENST00000258733 AK9Q5TCS8 1911 aa8.73□□□□□ -1.01
GPNMB-201ENST00000258733 B4DLN1 442 aa8.72□□□□□ -1.01
GPNMB-201ENST00000258733 SMNDC1O75940 238 aaKnown RBP eCLIP8.72□□□□□ -1.01
GPNMB-201ENST00000258733 ACTN3Q08043 901 aaPredicted RBP8.72□□□□□ -1.01
GPNMB-201ENST00000258733 COX10Q12887 443 aa8.72□□□□□ -1.01
GPNMB-201ENST00000258733 TPD52L1Q16890 204 aaPredicted RBP8.72□□□□□ -1.01
GPNMB-201ENST00000258733 ARHGAP29Q52LW3 1261 aa8.72□□□□□ -1.01
GPNMB-201ENST00000258733 TRIM58Q8NG06 486 aa8.72□□□□□ -1.01
GPNMB-201ENST00000258733 ZFPM2Q8WW38 1151 aa8.72□□□□□ -1.01
GPNMB-201ENST00000258733 APPBP2Q92624 585 aa8.72□□□□□ -1.01
GPNMB-201ENST00000258733 CLUAP1Q96AJ1 413 aa8.72□□□□□ -1.01
GPNMB-201ENST00000258733 TANGO6Q9C0B7 1094 aa8.72□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 379.3 ms