RNA–Protein interactions for RNA: ENST00000252597.7

USHBP1-201, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USHBP1, Length 3,335 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-201ENST00000252597 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.7□□□□□ -0.22
USHBP1-201ENST00000252597 SUGCTQ9HAC7 445 aa13.7□□□□□ -0.22
USHBP1-201ENST00000252597 TBC1D2BQ9UPU7 963 aa13.7□□□□□ -0.22
USHBP1-201ENST00000252597 STRCP1A6NGW2 1772 aa13.7□□□□□ -0.22
USHBP1-201ENST00000252597 TULP1O00294 542 aaPredicted RBP13.7□□□□□ -0.22
USHBP1-201ENST00000252597 PRDM1O75626 825 aa13.7□□□□□ -0.22
USHBP1-201ENST00000252597 GUCY1A2P33402 732 aa13.7□□□□□ -0.22
USHBP1-201ENST00000252597 PLA2G4AP47712 749 aa13.7□□□□□ -0.22
USHBP1-201ENST00000252597 FOXO4P98177 505 aa13.7□□□□□ -0.22
USHBP1-201ENST00000252597 PDE4CQ08493 712 aa13.7□□□□□ -0.22
USHBP1-201ENST00000252597 SSRP1Q08945 709 aaKnown RBP13.7□□□□□ -0.22
USHBP1-201ENST00000252597 TBC1D10CQ8IV04 446 aa13.7□□□□□ -0.22
USHBP1-201ENST00000252597 ARMT1Q9H993 441 aa13.7□□□□□ -0.22
USHBP1-201ENST00000252597 HPS5Q9UPZ3 1129 aa13.7□□□□□ -0.22
USHBP1-201ENST00000252597 FHOD1Q9Y613 1164 aa13.7□□□□□ -0.22
USHBP1-201ENST00000252597 SLC39A14Q15043 492 aa13.7□□□□□ -0.22
USHBP1-201ENST00000252597 SYCP1Q15431 976 aa13.7□□□□□ -0.22
USHBP1-201ENST00000252597 CERS3Q8IU89 383 aa13.7□□□□□ -0.22
USHBP1-201ENST00000252597 PLIN2Q99541 437 aa13.7□□□□□ -0.22
USHBP1-201ENST00000252597 POLR3EQ9NVU0 708 aa13.7□□□□□ -0.22
USHBP1-201ENST00000252597 ERBB3P21860 1342 aa13.7□□□□□ -0.22
USHBP1-201ENST00000252597 A0A1W2PQ27 194 aa13.69□□□□□ -0.22
USHBP1-201ENST00000252597 A0A1W2PQ64 194 aa13.69□□□□□ -0.22
USHBP1-201ENST00000252597 A0A1W2PQD8 194 aa13.69□□□□□ -0.22
USHBP1-201ENST00000252597 IRX5P78411 483 aaPredicted RBP13.69□□□□□ -0.22
USHBP1-201ENST00000252597 AXDND1Q5T1B0 1012 aaPredicted RBP13.69□□□□□ -0.22
USHBP1-201ENST00000252597 FOXP4Q8IVH2 680 aaPredicted RBP13.69□□□□□ -0.22
USHBP1-201ENST00000252597 CCDC191Q8NCU4 936 aa13.69□□□□□ -0.22
USHBP1-201ENST00000252597 RAI14Q9P0K7 980 aa13.69□□□□□ -0.22
USHBP1-201ENST00000252597 SH3TC1Q8TE82 1336 aa13.69□□□□□ -0.22
USHBP1-201ENST00000252597 ERICH2A1L162 156 aa13.69□□□□□ -0.22
USHBP1-201ENST00000252597 CCP110O43303 1012 aa13.69□□□□□ -0.22
USHBP1-201ENST00000252597 FMR1Q06787 632 aaKnown RBP eCLIP13.69□□□□□ -0.22
USHBP1-201ENST00000252597 TRIM22Q8IYM9 498 aa13.69□□□□□ -0.22
USHBP1-201ENST00000252597 APPBP2Q92624 585 aa13.69□□□□□ -0.22
USHBP1-201ENST00000252597 PARD6BQ9BYG5 372 aa13.69□□□□□ -0.22
USHBP1-201ENST00000252597 SLAIN2Q9P270 581 aa13.69□□□□□ -0.22
USHBP1-201ENST00000252597 HOOK1Q9UJC3 728 aaKnown RBP13.69□□□□□ -0.22
USHBP1-201ENST00000252597 ZNF532Q9HCE3 1301 aa13.69□□□□□ -0.22
USHBP1-201ENST00000252597 TEX33O43247 280 aa13.69□□□□□ -0.22
USHBP1-201ENST00000252597 PRKAB2O43741 272 aa13.69□□□□□ -0.22
USHBP1-201ENST00000252597 ERCC3P19447 782 aa13.69□□□□□ -0.22
USHBP1-201ENST00000252597 METTL16Q86W50 562 aaKnown RBP13.69□□□□□ -0.22
USHBP1-201ENST00000252597 PCMTD1Q96MG8 357 aaPredicted RBP13.69□□□□□ -0.22
USHBP1-201ENST00000252597 VPS16Q9H269 839 aa13.69□□□□□ -0.22
USHBP1-201ENST00000252597 ALDH8A1Q9H2A2 487 aaPredicted RBP13.69□□□□□ -0.22
USHBP1-201ENST00000252597 BLZF1Q9H2G9 400 aa13.69□□□□□ -0.22
USHBP1-201ENST00000252597 LMTK3Q96Q04 1460 aa13.68□□□□□ -0.22
USHBP1-201ENST00000252597 PSDA5PKW4 1024 aaPredicted RBP13.68□□□□□ -0.22
USHBP1-201ENST00000252597 CDKL5O76039 1030 aa13.68□□□□□ -0.22
USHBP1-201ENST00000252597 BRINP3Q76B58 766 aa13.68□□□□□ -0.22
USHBP1-201ENST00000252597 MAGEB6Q8N7X4 407 aa13.68□□□□□ -0.22
USHBP1-201ENST00000252597 PRDM11Q9NQV5 511 aa13.68□□□□□ -0.22
USHBP1-201ENST00000252597 WWC3Q9ULE0 1092 aa13.68□□□□□ -0.22
USHBP1-201ENST00000252597 MBD4O95243 580 aa13.68□□□□□ -0.22
USHBP1-201ENST00000252597 CDC25AP30304 524 aa13.68□□□□□ -0.22
USHBP1-201ENST00000252597 EVA1CP58658 441 aa13.68□□□□□ -0.22
USHBP1-201ENST00000252597 DHX8Q14562 1220 aaKnown RBP13.68□□□□□ -0.22
USHBP1-201ENST00000252597 JAKMIP3Q5VZ66 844 aa13.68□□□□□ -0.22
USHBP1-201ENST00000252597 KRI1Q8N9T8 703 aaKnown RBP13.68□□□□□ -0.22
USHBP1-201ENST00000252597 CAPZA3Q96KX2 299 aa13.68□□□□□ -0.22
USHBP1-201ENST00000252597 USP54Q70EL1 1684 aa13.68□□□□□ -0.22
USHBP1-201ENST00000252597 APOA5Q6Q788 366 aa13.67□□□□□ -0.22
USHBP1-201ENST00000252597 TRMT112Q9UI30 125 aaKnown RBP13.67□□□□□ -0.22
USHBP1-201ENST00000252597 FAM205CA6NFA0 338 aa13.67□□□□□ -0.22
USHBP1-201ENST00000252597 ZMYND10O75800 440 aa13.67□□□□□ -0.22
USHBP1-201ENST00000252597 PHKA1P46020 1223 aa13.67□□□□□ -0.22
USHBP1-201ENST00000252597 DNA2P51530 1060 aa13.67□□□□□ -0.22
USHBP1-201ENST00000252597 POSTNQ15063 836 aa13.67□□□□□ -0.22
USHBP1-201ENST00000252597 ATL3Q6DD88 541 aa13.67□□□□□ -0.22
USHBP1-201ENST00000252597 IGSF22Q8N9C0 903 aa13.67□□□□□ -0.22
USHBP1-201ENST00000252597 DCAF5Q96JK2 942 aa13.67□□□□□ -0.22
USHBP1-201ENST00000252597 NUP88Q99567 741 aaPredicted RBP13.67□□□□□ -0.22
USHBP1-201ENST00000252597 AKAP2Q9Y2D5 859 aa13.67□□□□□ -0.22
USHBP1-201ENST00000252597 PCDHB6Q9Y5E3 794 aa13.67□□□□□ -0.22
USHBP1-201ENST00000252597 ARHGAP6O43182 974 aa13.67□□□□□ -0.22
USHBP1-201ENST00000252597 KIF5CO60282 957 aa13.67□□□□□ -0.22
USHBP1-201ENST00000252597 ZNF174Q15697 407 aa13.67□□□□□ -0.22
USHBP1-201ENST00000252597 VSTM4Q8IW00 320 aa13.67□□□□□ -0.22
USHBP1-201ENST00000252597 CDC5LQ99459 802 aaKnown RBP13.67□□□□□ -0.22
USHBP1-201ENST00000252597 VPS54Q9P1Q0 977 aa13.67□□□□□ -0.22
USHBP1-201ENST00000252597 RANBP6O60518 1105 aaKnown RBP13.66□□□□□ -0.22
USHBP1-201ENST00000252597 SASH3O75995 380 aa13.66□□□□□ -0.22
USHBP1-201ENST00000252597 MRPS25P82663 173 aaKnown RBP13.66□□□□□ -0.22
USHBP1-201ENST00000252597 TAF3Q5VWG9 929 aa13.66□□□□□ -0.22
USHBP1-201ENST00000252597 ACRBPQ8NEB7 543 aa13.66□□□□□ -0.22
USHBP1-201ENST00000252597 OXER1Q8TDS5 423 aa13.66□□□□□ -0.22
USHBP1-201ENST00000252597 GREM2Q9H772 168 aa13.66□□□□□ -0.22
USHBP1-201ENST00000252597 PDE11AQ9HCR9 933 aa13.66□□□□□ -0.22
USHBP1-201ENST00000252597 LRP2BPQ9P2M1 347 aa13.66□□□□□ -0.22
USHBP1-201ENST00000252597 SLIT3O75094 1523 aa13.66□□□□□ -0.22
USHBP1-201ENST00000252597 UTYO14607 1347 aa13.66□□□□□ -0.22
USHBP1-201ENST00000252597 VWA3AA6NCI4 1184 aa13.66□□□□□ -0.22
USHBP1-201ENST00000252597 FANCGO15287 622 aa13.66□□□□□ -0.22
USHBP1-201ENST00000252597 CAPN2P17655 700 aa13.66□□□□□ -0.22
USHBP1-201ENST00000252597 ITGA6P23229 1130 aa13.66□□□□□ -0.22
USHBP1-201ENST00000252597 MCAMP43121 646 aa13.66□□□□□ -0.22
USHBP1-201ENST00000252597 HSP90B2PQ58FF3 399 aa13.66□□□□□ -0.22
USHBP1-201ENST00000252597 SPECC1LQ69YQ0 1117 aa13.66□□□□□ -0.22
USHBP1-201ENST00000252597 KIF6Q6ZMV9 814 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms