RNA–Protein interactions for RNA: ENST00000228251.8

YBX3-201, Transcript of Y-box binding protein 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene YBX3, Length 1,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-201ENST00000228251 TRAPPC3LQ5T215 181 aa22.32■■□□□ 1.16
YBX3-201ENST00000228251 SEPT12Q8IYM1 358 aa22.32■■□□□ 1.16
YBX3-201ENST00000228251 AIFM3Q96NN9 605 aa22.32■■□□□ 1.16
YBX3-201ENST00000228251 USP25Q9UHP3 1055 aa22.32■■□□□ 1.16
YBX3-201ENST00000228251 HIBADHP31937 336 aaKnown RBP22.31■■□□□ 1.16
YBX3-201ENST00000228251 DYNLL1P63167 89 aaKnown RBP22.31■■□□□ 1.16
YBX3-201ENST00000228251 VPS37DQ86XT2 251 aa22.31■■□□□ 1.16
YBX3-201ENST00000228251 CCAR1Q8IX12 1150 aaKnown RBP22.31■■□□□ 1.16
YBX3-201ENST00000228251 ALG1Q9BT22 464 aa22.31■■□□□ 1.16
YBX3-201ENST00000228251 MYH6P13533 1939 aa22.31■■□□□ 1.16
YBX3-201ENST00000228251 A0A1W2PQ27 194 aa22.3■■□□□ 1.16
YBX3-201ENST00000228251 A0A1W2PQ64 194 aa22.3■■□□□ 1.16
YBX3-201ENST00000228251 A0A1W2PQD8 194 aa22.3■■□□□ 1.16
YBX3-201ENST00000228251 AP5Z1O43299 807 aa22.3■■□□□ 1.16
YBX3-201ENST00000228251 RFC4P35249 363 aa22.3■■□□□ 1.16
YBX3-201ENST00000228251 TMED8Q6PL24 325 aaPredicted RBP22.3■■□□□ 1.16
YBX3-201ENST00000228251 CKAP2LQ8IYA6 745 aa22.3■■□□□ 1.16
YBX3-201ENST00000228251 FAM200AQ8TCP9 573 aa22.3■■□□□ 1.16
YBX3-201ENST00000228251 MYL10Q9BUA6 226 aa22.3■■□□□ 1.16
YBX3-201ENST00000228251 CCDC39Q9UFE4 941 aa22.3■■□□□ 1.16
YBX3-201ENST00000228251 TRPC5Q9UL62 973 aaPredicted RBP22.3■■□□□ 1.16
YBX3-201ENST00000228251 SLC12A7Q9Y666 1083 aa22.3■■□□□ 1.16
YBX3-201ENST00000228251 SMIM22K7EJ46 135 aa22.3■■□□□ 1.16
YBX3-201ENST00000228251 IFNAR1P17181 557 aa22.3■■□□□ 1.16
YBX3-201ENST00000228251 SEC23AQ15436 765 aa22.3■■□□□ 1.16
YBX3-201ENST00000228251 CPLX2Q6PUV4 134 aaKnown RBP22.3■■□□□ 1.16
YBX3-201ENST00000228251 TXNRD3Q86VQ6 643 aa22.3■■□□□ 1.16
YBX3-201ENST00000228251 PHKBQ93100 1093 aa22.3■■□□□ 1.16
YBX3-201ENST00000228251 PCDHA7Q9UN72 937 aa22.3■■□□□ 1.16
YBX3-201ENST00000228251 CLIC4Q9Y696 253 aa22.3■■□□□ 1.16
YBX3-201ENST00000228251 MECOMQ03112 1051 aa22.29■■□□□ 1.16
YBX3-201ENST00000228251 KRT40Q6A162 431 aa22.29■■□□□ 1.16
YBX3-201ENST00000228251 ADALQ6DHV7 355 aa22.29■■□□□ 1.16
YBX3-201ENST00000228251 NFXL1Q6ZNB6 911 aa22.29■■□□□ 1.16
YBX3-201ENST00000228251 TFCP2L1Q9NZI6 479 aa22.29■■□□□ 1.16
YBX3-201ENST00000228251 ZKSCAN5Q9Y2L8 839 aa22.29■■□□□ 1.16
YBX3-201ENST00000228251 CCDC69A6NI79 296 aa22.28■■□□□ 1.16
YBX3-201ENST00000228251 FMNL1O95466 1100 aaPredicted RBP22.28■■□□□ 1.16
YBX3-201ENST00000228251 FAM160A1Q05DH4 1040 aa22.28■■□□□ 1.16
YBX3-201ENST00000228251 MEX3CQ5U5Q3 659 aaKnown RBP22.28■■□□□ 1.16
YBX3-201ENST00000228251 ADCY5O95622 1261 aa22.27■■□□□ 1.16
YBX3-201ENST00000228251 POLR3DP05423 398 aaPredicted RBP22.27■■□□□ 1.16
YBX3-201ENST00000228251 U2AF2P26368 475 aaKnown RBP eCLIP22.27■■□□□ 1.162e-8■■□□□ 14.4
YBX3-201ENST00000228251 IARSP41252 1262 aaKnown RBP22.27■■□□□ 1.16
YBX3-201ENST00000228251 GRAPQ13588 217 aa22.27■■□□□ 1.16
YBX3-201ENST00000228251 WTAPQ15007 396 aa22.27■■□□□ 1.16
YBX3-201ENST00000228251 TMTC2Q8N394 836 aa22.27■■□□□ 1.16
YBX3-201ENST00000228251 GRAPLQ8TC17 118 aaPredicted RBP22.27■■□□□ 1.16
YBX3-201ENST00000228251 KCNG4Q8TDN1 519 aa22.27■■□□□ 1.16
YBX3-201ENST00000228251 CTAGE5O15320 804 aa22.27■■□□□ 1.16
YBX3-201ENST00000228251 SART3Q15020 963 aaKnown RBP22.27■■□□□ 1.16
YBX3-201ENST00000228251 NBPF11Q86T75 865 aa22.27■■□□□ 1.16
YBX3-201ENST00000228251 CCDC144CPQ8IYA2 1237 aa22.27■■□□□ 1.16
YBX3-201ENST00000228251 FMR1NBQ8N0W7 255 aaPredicted RBP22.27■■□□□ 1.16
YBX3-201ENST00000228251 LRRC37AA6NMS7 1700 aa22.26■■□□□ 1.15
YBX3-201ENST00000228251 ZNF500O60304 480 aaPredicted RBP22.26■■□□□ 1.15
YBX3-201ENST00000228251 IGSF3O75054 1194 aa22.26■■□□□ 1.15
YBX3-201ENST00000228251 PCP11498 1178 aaKnown RBP22.26■■□□□ 1.15
YBX3-201ENST00000228251 ME1P48163 572 aa22.26■■□□□ 1.15
YBX3-201ENST00000228251 RRP12Q5JTH9 1297 aaKnown RBP22.26■■□□□ 1.15
YBX3-201ENST00000228251 C15orf52Q6ZUT6 534 aaKnown RBP22.26■■□□□ 1.15
YBX3-201ENST00000228251 SLC51AQ86UW1 340 aa22.26■■□□□ 1.15
YBX3-201ENST00000228251 ZKSCAN3Q9BRR0 538 aa22.26■■□□□ 1.15
YBX3-201ENST00000228251 DDX52Q9Y2R4 599 aaKnown RBP eCLIP22.26■■□□□ 1.15
YBX3-201ENST00000228251 LTBP1Q14766 1721 aa22.26■■□□□ 1.15
YBX3-201ENST00000228251 UBE2Q2LH0YL09 131 aa22.25■■□□□ 1.15
YBX3-201ENST00000228251 CRY2Q49AN0 593 aa22.25■■□□□ 1.15
YBX3-201ENST00000228251 ANO6Q4KMQ2 910 aa22.25■■□□□ 1.15
YBX3-201ENST00000228251 AXDND1Q5T1B0 1012 aaPredicted RBP22.25■■□□□ 1.15
YBX3-201ENST00000228251 ANO1Q5XXA6 986 aa22.25■■□□□ 1.15
YBX3-201ENST00000228251 PRR5LQ6MZQ0 368 aa22.25■■□□□ 1.15
YBX3-201ENST00000228251 CTR9Q6PD62 1173 aa22.25■■□□□ 1.15
YBX3-201ENST00000228251 CCDC73Q6ZRK6 1079 aa22.25■■□□□ 1.15
YBX3-201ENST00000228251 FSIP1Q8NA03 581 aa22.25■■□□□ 1.15
YBX3-201ENST00000228251 CNBD1Q8NA66 436 aa22.25■■□□□ 1.15
YBX3-201ENST00000228251 CBX8Q9HC52 389 aa22.25■■□□□ 1.15
YBX3-201ENST00000228251 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP22.25■■□□□ 1.15
YBX3-201ENST00000228251 MINDY4BA8MYZ0 360 aa22.25■■□□□ 1.15
YBX3-201ENST00000228251 PRDX5P30044 214 aa22.25■■□□□ 1.15
YBX3-201ENST00000228251 RTN1Q16799 776 aa22.25■■□□□ 1.15
YBX3-201ENST00000228251 ZNF654Q8IZM8 581 aa22.25■■□□□ 1.15
YBX3-201ENST00000228251 MRPS27Q92552 414 aaKnown RBP22.25■■□□□ 1.15
YBX3-201ENST00000228251 ESR2Q92731 530 aa22.25■■□□□ 1.15
YBX3-201ENST00000228251 LEMD3Q9Y2U8 911 aa22.25■■□□□ 1.15
YBX3-201ENST00000228251 CDK5RAP2Q96SN8 1893 aa22.24■■□□□ 1.15
YBX3-201ENST00000228251 EP400Q96L91 3159 aa22.24■■□□□ 1.15
YBX3-201ENST00000228251 CYP2D7A0A087X1C5 515 aa22.24■■□□□ 1.15
YBX3-201ENST00000228251 SPTLC2O15270 562 aa22.24■■□□□ 1.15
YBX3-201ENST00000228251 GYS1P13807 737 aa22.24■■□□□ 1.15
YBX3-201ENST00000228251 SSRP1Q08945 709 aaKnown RBP22.23■■□□□ 1.15
YBX3-201ENST00000228251 SLC39A14Q15043 492 aa22.23■■□□□ 1.15
YBX3-201ENST00000228251 STK38Q15208 465 aa22.23■■□□□ 1.15
YBX3-201ENST00000228251 SYNE3Q6ZMZ3 975 aa22.23■■□□□ 1.15
YBX3-201ENST00000228251 TDRD7Q8NHU6 1098 aaKnown RBP22.23■■□□□ 1.15
YBX3-201ENST00000228251 TNKSO95271 1327 aa22.23■■□□□ 1.15
YBX3-201ENST00000228251 CAVIN2O95810 425 aa22.22■■□□□ 1.15
YBX3-201ENST00000228251 MSNP26038 577 aaKnown RBP22.22■■□□□ 1.15
YBX3-201ENST00000228251 PTPAQ15257 358 aa22.22■■□□□ 1.15
YBX3-201ENST00000228251 CRACR2BQ8N4Y2 399 aaPredicted RBP22.22■■□□□ 1.15
YBX3-201ENST00000228251 ENAHQ8N8S7 591 aaPredicted RBP22.22■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms