RNA–Protein interactions for RNA: ENST00000216877.10

PTPRA-201, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,725 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-201ENST00000216877 GJB4Q9NTQ9 266 aa16.62■□□□□ 0.25
PTPRA-201ENST00000216877 TECPR2O15040 1411 aa16.62■□□□□ 0.25
PTPRA-201ENST00000216877 SYF2O95926 243 aaKnown RBP16.62■□□□□ 0.25
PTPRA-201ENST00000216877 CCDC129Q6ZRS4 1044 aa16.62■□□□□ 0.25
PTPRA-201ENST00000216877 FCHSD1Q86WN1 690 aa16.62■□□□□ 0.25
PTPRA-201ENST00000216877 SPATS2LQ9NUQ6 558 aaKnown RBP16.62■□□□□ 0.25
PTPRA-201ENST00000216877 NFE2L3Q9Y4A8 694 aa16.62■□□□□ 0.25
PTPRA-201ENST00000216877 IL13P35225 146 aa16.61■□□□□ 0.25
PTPRA-201ENST00000216877 CCNHP51946 323 aaPredicted RBP16.61■□□□□ 0.25
PTPRA-201ENST00000216877 ADALQ6DHV7 355 aa16.61■□□□□ 0.25
PTPRA-201ENST00000216877 EVI5LQ96CN4 794 aa16.61■□□□□ 0.25
PTPRA-201ENST00000216877 SPDL1Q96EA4 605 aa16.61■□□□□ 0.25
PTPRA-201ENST00000216877 ZNF330Q9Y3S2 320 aaPredicted RBP16.61■□□□□ 0.25
PTPRA-201ENST00000216877 KIAA0232Q92628 1395 aa16.61■□□□□ 0.25
PTPRA-201ENST00000216877 SRGAP2O75044 1071 aa16.61■□□□□ 0.25
PTPRA-201ENST00000216877 CCDC40Q4G0X9 1142 aa16.61■□□□□ 0.25
PTPRA-201ENST00000216877 MICAL1Q8TDZ2 1067 aa16.61■□□□□ 0.25
PTPRA-201ENST00000216877 ZBTB10Q96DT7 871 aa16.61■□□□□ 0.25
PTPRA-201ENST00000216877 C9orf78Q9NZ63 289 aaPredicted RBP16.61■□□□□ 0.25
PTPRA-201ENST00000216877 AKR1B15C9JRZ8 316 aaPredicted RBP16.61■□□□□ 0.25
PTPRA-201ENST00000216877 CPLX1O14810 134 aa16.61■□□□□ 0.25
PTPRA-201ENST00000216877 PDHBP11177 359 aa16.61■□□□□ 0.25
PTPRA-201ENST00000216877 PFKFB1P16118 471 aa16.61■□□□□ 0.25
PTPRA-201ENST00000216877 SF3B2Q13435 895 aaKnown RBP16.61■□□□□ 0.25
PTPRA-201ENST00000216877 CDHR2Q9BYE9 1310 aa16.61■□□□□ 0.25
PTPRA-201ENST00000216877 AP1G2O75843 785 aa16.6■□□□□ 0.25
PTPRA-201ENST00000216877 ANXA1P04083 346 aa16.6■□□□□ 0.25
PTPRA-201ENST00000216877 PPFIA1Q13136 1202 aa16.6■□□□□ 0.25
PTPRA-201ENST00000216877 MICALCLQ6ZW33 695 aa16.6■□□□□ 0.25
PTPRA-201ENST00000216877 ESCO1Q5FWF5 840 aa16.6■□□□□ 0.25
PTPRA-201ENST00000216877 CCDC70Q6NSX1 233 aa16.6■□□□□ 0.25
PTPRA-201ENST00000216877 TAF7Q15545 349 aaPredicted RBP16.6■□□□□ 0.25
PTPRA-201ENST00000216877 HSP90AB4PQ58FF6 505 aa16.6■□□□□ 0.25
PTPRA-201ENST00000216877 SLF1Q9BQI6 1058 aa16.6■□□□□ 0.25
PTPRA-201ENST00000216877 HDAC6Q9UBN7 1215 aa16.6■□□□□ 0.25
PTPRA-201ENST00000216877 BAIAP2L1Q9UHR4 511 aa16.6■□□□□ 0.25
PTPRA-201ENST00000216877 HPCAL4Q9UM19 191 aa16.6■□□□□ 0.25
PTPRA-201ENST00000216877 MAP4K1Q92918 833 aa16.59■□□□□ 0.25
PTPRA-201ENST00000216877 C8orf76Q96K31 380 aa16.59■□□□□ 0.25
PTPRA-201ENST00000216877 MYO6Q9UM54 1294 aa16.59■□□□□ 0.25
PTPRA-201ENST00000216877 RGPD1P0DJD0 1748 aa16.59■□□□□ 0.25
PTPRA-201ENST00000216877 CDC25CP30307 473 aa16.59■□□□□ 0.25
PTPRA-201ENST00000216877 TC2NQ8N9U0 490 aa16.59■□□□□ 0.25
PTPRA-201ENST00000216877 NUDT16Q96DE0 195 aaKnown RBP16.59■□□□□ 0.25
PTPRA-201ENST00000216877 RAB21Q9UL25 225 aa16.59■□□□□ 0.25
PTPRA-201ENST00000216877 CAND2O75155 1236 aa16.59■□□□□ 0.25
PTPRA-201ENST00000216877 ZNF589Q86UQ0 364 aaPredicted RBP16.59■□□□□ 0.25
PTPRA-201ENST00000216877 SH2D3CQ8N5H7 860 aa16.59■□□□□ 0.25
PTPRA-201ENST00000216877 ARMC2Q8NEN0 867 aa16.59■□□□□ 0.25
PTPRA-201ENST00000216877 PHAXQ9H814 394 aaKnown RBP16.59■□□□□ 0.25
PTPRA-201ENST00000216877 ADCY9O60503 1353 aa16.58■□□□□ 0.25
PTPRA-201ENST00000216877 SNCBQ16143 134 aa16.58■□□□□ 0.25
PTPRA-201ENST00000216877 CCDC121Q6ZUS5 278 aa16.58■□□□□ 0.25
PTPRA-201ENST00000216877 MSANTD4Q8NCY6 345 aa16.58■□□□□ 0.25
PTPRA-201ENST00000216877 FAXDC2Q96IV6 333 aa16.58■□□□□ 0.25
PTPRA-201ENST00000216877 COL3A1P02461 1466 aaPredicted RBP16.58■□□□□ 0.24
PTPRA-201ENST00000216877 AOX1Q06278 1338 aa16.58■□□□□ 0.24
PTPRA-201ENST00000216877 ARHGAP25P42331 645 aa16.58■□□□□ 0.24
PTPRA-201ENST00000216877 ABL1P00519 1130 aa16.58■□□□□ 0.24
PTPRA-201ENST00000216877 ADD1P35611 737 aaKnown RBP16.58■□□□□ 0.24
PTPRA-201ENST00000216877 USP5P45974 858 aa16.58■□□□□ 0.24
PTPRA-201ENST00000216877 CCDC181Q5TID7 509 aa16.58■□□□□ 0.24
PTPRA-201ENST00000216877 RAD9BQ6WBX8 426 aa16.58■□□□□ 0.24
PTPRA-201ENST00000216877 ABTB2Q8N961 1025 aa16.58■□□□□ 0.24
PTPRA-201ENST00000216877 JMYQ8N9B5 988 aa16.58■□□□□ 0.24
PTPRA-201ENST00000216877 RIPOR2Q9Y4F9 1068 aa16.58■□□□□ 0.24
PTPRA-201ENST00000216877 STRCP1A6NGW2 1772 aa16.57■□□□□ 0.24
PTPRA-201ENST00000216877 PFKFB2O60825 505 aa16.57■□□□□ 0.24
PTPRA-201ENST00000216877 GIGYF1O75420 1035 aaPredicted RBP16.57■□□□□ 0.24
PTPRA-201ENST00000216877 PSMD2Q13200 908 aa16.57■□□□□ 0.24
PTPRA-201ENST00000216877 KCNG4Q8TDN1 519 aa16.57■□□□□ 0.24
PTPRA-201ENST00000216877 THOC1Q96FV9 657 aaKnown RBP16.57■□□□□ 0.24
PTPRA-201ENST00000216877 PPANQ9NQ55 473 aaKnown RBP16.57■□□□□ 0.24
PTPRA-201ENST00000216877 CDC42BPGQ6DT37 1551 aa16.57■□□□□ 0.24
PTPRA-201ENST00000216877 EIF3HO15372 352 aaKnown RBP eCLIP16.57■□□□□ 0.24
PTPRA-201ENST00000216877 MEFVO15553 781 aaPredicted RBP16.57■□□□□ 0.24
PTPRA-201ENST00000216877 IRX1P78414 480 aaPredicted RBP16.57■□□□□ 0.24
PTPRA-201ENST00000216877 G3BP1Q13283 466 aaKnown RBP eCLIP16.57■□□□□ 0.24
PTPRA-201ENST00000216877 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.57■□□□□ 0.24
PTPRA-201ENST00000216877 JADE2Q9NQC1 790 aa16.57■□□□□ 0.24
PTPRA-201ENST00000216877 MCM8Q9UJA3 840 aa16.57■□□□□ 0.24
PTPRA-201ENST00000216877 ADGRG1Q9Y653 693 aa16.57■□□□□ 0.24
PTPRA-201ENST00000216877 YTHDC2Q9H6S0 1430 aaKnown RBP16.57■□□□□ 0.24
PTPRA-201ENST00000216877 COBLO75128 1261 aa16.57■□□□□ 0.24
PTPRA-201ENST00000216877 HPDP32754 393 aaPredicted RBP16.57■□□□□ 0.24
PTPRA-201ENST00000216877 HDGFL1Q5TGJ6 251 aa16.57■□□□□ 0.24
PTPRA-201ENST00000216877 SSH3Q8TE77 659 aa16.57■□□□□ 0.24
PTPRA-201ENST00000216877 COG1Q8WTW3 980 aa16.57■□□□□ 0.24
PTPRA-201ENST00000216877 RSRC1Q96IZ7 334 aaKnown RBP16.57■□□□□ 0.24
PTPRA-201ENST00000216877 SELENOOQ9BVL4 669 aa16.57■□□□□ 0.24
PTPRA-201ENST00000216877 NBPF20Q3BBV1 942 aa16.56■□□□□ 0.24
PTPRA-201ENST00000216877 SAMSN1Q9NSI8 373 aaKnown RBP16.56■□□□□ 0.24
PTPRA-201ENST00000216877 SNX1Q13596 522 aa16.56■□□□□ 0.24
PTPRA-201ENST00000216877 GRIPAP1Q4V328 841 aa16.56■□□□□ 0.24
PTPRA-201ENST00000216877 SMARCC2Q8TAQ2 1214 aa16.56■□□□□ 0.24
PTPRA-201ENST00000216877 NUP88Q99567 741 aaPredicted RBP16.56■□□□□ 0.24
PTPRA-201ENST00000216877 IKBKBO14920 756 aa16.56■□□□□ 0.24
PTPRA-201ENST00000216877 MYBL1P10243 752 aa16.56■□□□□ 0.24
PTPRA-201ENST00000216877 SEC24CP53992 1094 aa16.56■□□□□ 0.24
PTPRA-201ENST00000216877 KRT32Q14532 448 aa16.56■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms