RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 CCDC25Q86WR0 208 aa15.19■□□□□ 0.02
SF3A1-201ENST00000215793 GPR161Q8N6U8 529 aaKnown RBP15.19■□□□□ 0.02
SF3A1-201ENST00000215793 CNBD1Q8NA66 436 aa15.19■□□□□ 0.02
SF3A1-201ENST00000215793 NUP58Q9BVL2 599 aa15.19■□□□□ 0.02
SF3A1-201ENST00000215793 SERPINA10Q9UK55 444 aa15.19■□□□□ 0.02
SF3A1-201ENST00000215793 V9GY48 417 aaPredicted RBP15.19■□□□□ 0.02
SF3A1-201ENST00000215793 CYP26C1Q6V0L0 522 aa15.19■□□□□ 0.02
SF3A1-201ENST00000215793 NUP153P49790 1475 aaKnown RBP15.19■□□□□ 0.02
SF3A1-201ENST00000215793 STX10O60499 249 aa15.19■□□□□ 0.02
SF3A1-201ENST00000215793 CSGALNACT2Q8N6G5 542 aa15.19■□□□□ 0.02
SF3A1-201ENST00000215793 ZFP91Q96JP5 570 aaPredicted RBP15.19■□□□□ 0.02
SF3A1-201ENST00000215793 NAPGQ99747 312 aaPredicted RBP15.19■□□□□ 0.02
SF3A1-201ENST00000215793 CCDC94Q9BW85 323 aaPredicted RBP15.19■□□□□ 0.02
SF3A1-201ENST00000215793 MAST3O60307 1309 aa15.19■□□□□ 0.02
SF3A1-201ENST00000215793 DKC1O60832 514 aaKnown RBP eCLIP15.19■□□□□ 0.02
SF3A1-201ENST00000215793 KCNA6P17658 529 aa15.19■□□□□ 0.02
SF3A1-201ENST00000215793 IL13P35225 146 aa15.19■□□□□ 0.02
SF3A1-201ENST00000215793 BIRC3Q13489 604 aa15.19■□□□□ 0.02
SF3A1-201ENST00000215793 WDR66Q8TBY9 1149 aa15.19■□□□□ 0.02
SF3A1-201ENST00000215793 CTNND2Q9UQB3 1225 aa15.19■□□□□ 0.02
SF3A1-201ENST00000215793 PIK3AP1Q6ZUJ8 805 aa15.18■□□□□ 0.02
SF3A1-201ENST00000215793 TRAPPC8Q9Y2L5 1435 aa15.18■□□□□ 0.02
SF3A1-201ENST00000215793 TNFAIP3P21580 790 aa15.18■□□□□ 0.02
SF3A1-201ENST00000215793 ATP5DP30049 168 aa15.18■□□□□ 0.02
SF3A1-201ENST00000215793 VPS16Q9H269 839 aa15.18■□□□□ 0.02
SF3A1-201ENST00000215793 GNPATO15228 680 aa15.18■□□□□ 0.02
SF3A1-201ENST00000215793 POLD1P28340 1107 aa15.18■□□□□ 0.02
SF3A1-201ENST00000215793 AKNAD1Q5T1N1 836 aa15.18■□□□□ 0.02
SF3A1-201ENST00000215793 ARMT1Q9H993 441 aa15.18■□□□□ 0.02
SF3A1-201ENST00000215793 NKIRAS1Q9NYS0 192 aa15.18■□□□□ 0.02
SF3A1-201ENST00000215793 OGFRQ9NZT2 677 aa15.18■□□□□ 0.02
SF3A1-201ENST00000215793 BIVM-ERCC5R4GMW8 1640 aa15.18■□□□□ 0.02
SF3A1-201ENST00000215793 ACTN4O43707 911 aaKnown RBP15.18■□□□□ 0.02
SF3A1-201ENST00000215793 SPOPO43791 374 aa15.18■□□□□ 0.02
SF3A1-201ENST00000215793 MRPS9P82933 396 aaKnown RBP15.18■□□□□ 0.02
SF3A1-201ENST00000215793 TTC38Q5R3I4 469 aa15.18■□□□□ 0.02
SF3A1-201ENST00000215793 GPATCH11Q8N954 259 aa15.18■□□□□ 0.02
SF3A1-201ENST00000215793 LPIN2Q92539 896 aa15.18■□□□□ 0.02
SF3A1-201ENST00000215793 CCDC114Q96M63 670 aa15.18■□□□□ 0.02
SF3A1-201ENST00000215793 KCNK9Q9NPC2 374 aa15.18■□□□□ 0.02
SF3A1-201ENST00000215793 MAP7D1Q3KQU3 841 aa15.17■□□□□ 0.02
SF3A1-201ENST00000215793 RBM26Q5T8P6 1007 aaKnown RBP15.17■□□□□ 0.02
SF3A1-201ENST00000215793 MICALL1Q8N3F8 863 aa15.17■□□□□ 0.02
SF3A1-201ENST00000215793 OTUD7AQ8TE49 926 aaPredicted RBP15.17■□□□□ 0.02
SF3A1-201ENST00000215793 ARHGEF10LQ9HCE6 1279 aa15.17■□□□□ 0.02
SF3A1-201ENST00000215793 STIM2Q9P246 746 aa15.17■□□□□ 0.02
SF3A1-201ENST00000215793 IMPACTQ9P2X3 320 aa15.17■□□□□ 0.02
SF3A1-201ENST00000215793 UHRF1BP1Q6BDS2 1440 aa15.17■□□□□ 0.02
SF3A1-201ENST00000215793 SMIM23A6NLE4 172 aa15.17■□□□□ 0.02
SF3A1-201ENST00000215793 FANCCQ00597 558 aa15.17■□□□□ 0.02
SF3A1-201ENST00000215793 MAK16Q9BXY0 300 aaKnown RBP15.17■□□□□ 0.02
SF3A1-201ENST00000215793 JAG2Q9Y219 1238 aa15.17■□□□□ 0.02
SF3A1-201ENST00000215793 CLEC11AQ9Y240 323 aa15.17■□□□□ 0.02
SF3A1-201ENST00000215793 IBTKQ9P2D0 1353 aaPredicted RBP15.17■□□□□ 0.02
SF3A1-201ENST00000215793 EDC4Q6P2E9 1401 aaKnown RBP15.17■□□□□ 0.02
SF3A1-201ENST00000215793 POLR2DO15514 142 aaKnown RBP15.17■□□□□ 0.02
SF3A1-201ENST00000215793 PAK1Q13153 545 aa15.17■□□□□ 0.02
SF3A1-201ENST00000215793 KRT25Q7Z3Z0 450 aa15.17■□□□□ 0.02
SF3A1-201ENST00000215793 GPCPD1Q9NPB8 672 aa15.17■□□□□ 0.02
SF3A1-201ENST00000215793 UFL1O94874 794 aa15.17■□□□□ 0.02
SF3A1-201ENST00000215793 LZTS2Q9BRK4 669 aa15.17■□□□□ 0.02
SF3A1-201ENST00000215793 CALUO43852 315 aaPredicted RBP15.16■□□□□ 0.02
SF3A1-201ENST00000215793 TMTC1Q8IUR5 882 aa15.16■□□□□ 0.02
SF3A1-201ENST00000215793 TRIM7Q9C029 511 aa15.16■□□□□ 0.02
SF3A1-201ENST00000215793 RBSNQ9H1K0 784 aa15.16■□□□□ 0.02
SF3A1-201ENST00000215793 EXOC7Q9UPT5 735 aa15.16■□□□□ 0.02
SF3A1-201ENST00000215793 SYNRGQ9UMZ2 1314 aa15.16■□□□□ 0.02
SF3A1-201ENST00000215793 ERCC5P28715 1186 aaPredicted RBP15.16■□□□□ 0.02
SF3A1-201ENST00000215793 NONOQ15233 471 aaKnown RBP eCLIP15.16■□□□□ 0.02
SF3A1-201ENST00000215793 A6NNZ2 444 aa15.16■□□□□ 0.02
SF3A1-201ENST00000215793 SP4Q02446 784 aa15.16■□□□□ 0.02
SF3A1-201ENST00000215793 TUBB8Q3ZCM7 444 aa15.16■□□□□ 0.02
SF3A1-201ENST00000215793 C8orf74Q6P047 294 aa15.16■□□□□ 0.02
SF3A1-201ENST00000215793 ANAPC4Q9UJX5 808 aa15.16■□□□□ 0.02
SF3A1-201ENST00000215793 SLC8A3P57103 927 aa15.16■□□□□ 0.02
SF3A1-201ENST00000215793 DNAJC21Q5F1R6 531 aaKnown RBP15.16■□□□□ 0.02
SF3A1-201ENST00000215793 CCDC110Q8TBZ0 833 aa15.16■□□□□ 0.02
SF3A1-201ENST00000215793 UBLCP1Q8WVY7 318 aaPredicted RBP15.16■□□□□ 0.02
SF3A1-201ENST00000215793 FAM227BQ96M60 508 aa15.16■□□□□ 0.02
SF3A1-201ENST00000215793 NCOA5Q9HCD5 579 aaKnown RBP15.16■□□□□ 0.02
SF3A1-201ENST00000215793 TCOF1Q13428 1488 aaKnown RBP15.15■□□□□ 0.02
SF3A1-201ENST00000215793 FCHSD1Q86WN1 690 aa15.15■□□□□ 0.02
SF3A1-201ENST00000215793 TM6SF1Q9BZW5 370 aa15.15■□□□□ 0.02
SF3A1-201ENST00000215793 DNAJC5BQ9UF47 199 aa15.15■□□□□ 0.02
SF3A1-201ENST00000215793 SAP30BPQ9UHR5 308 aaKnown RBP15.15■□□□□ 0.02
SF3A1-201ENST00000215793 ARHGAP6O43182 974 aa15.15■□□□□ 0.02
SF3A1-201ENST00000215793 CCNT1O60563 726 aaKnown RBP15.15■□□□□ 0.02
SF3A1-201ENST00000215793 ZNF202O95125 648 aa15.15■□□□□ 0.02
SF3A1-201ENST00000215793 SLC9C1Q4G0N8 1177 aa15.15■□□□□ 0.02
SF3A1-201ENST00000215793 IFT74Q96LB3 600 aa15.15■□□□□ 0.02
SF3A1-201ENST00000215793 KRT5P13647 590 aa15.15■□□□□ 0.02
SF3A1-201ENST00000215793 TXKP42681 527 aa15.15■□□□□ 0.02
SF3A1-201ENST00000215793 ZNF445P59923 1031 aa15.15■□□□□ 0.02
SF3A1-201ENST00000215793 LRWD1Q9UFC0 647 aa15.15■□□□□ 0.02
SF3A1-201ENST00000215793 GGA1Q9UJY5 639 aa15.15■□□□□ 0.02
SF3A1-201ENST00000215793 COL17A1Q9UMD9 1497 aaPredicted RBP15.15■□□□□ 0.02
SF3A1-201ENST00000215793 KAT6BQ8WYB5 2073 aa15.15■□□□□ 0.02
SF3A1-201ENST00000215793 CROCCP2Q86T23 111 aa15.15■□□□□ 0.02
SF3A1-201ENST00000215793 NOX5Q96PH1 765 aa15.15■□□□□ 0.02
SF3A1-201ENST00000215793 DDX23Q9BUQ8 820 aaKnown RBP15.15■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms