RNA–Protein interactions for RNA: ENSMUST00000035935.8

Ccdc40-201, Transcript of Coiled-coil domain-containing protein 40, mousemouse

APPRIS P2 TSL 1 (best) BASIC

Gene Ccdc40, Length 4,979 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40-201ENSMUST00000035935 Mrps25Q9D125 171 aaKnown RBP11.59□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Gm30191A0A0U1RNT7 187 aa11.59□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Rasal2E9PW37 1286 aa11.59□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 1700113H08RikE9Q9Q5 327 aa11.59□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Mapkapk5O54992 473 aa11.59□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Cyp26a1O55127 497 aa11.59□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Myl10Q62082 202 aa11.59□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Atp2b4Q6Q477 1205 aa11.59□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Lrrd1Q8C0R9 853 aa11.59□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Gle1Q8R322 699 aa11.59□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 CpvlQ9D3S9 478 aa11.59□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Xpo4Q9ESJ0 1151 aa11.59□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Cabp5Q9JLK3 173 aa11.59□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Tuft1O08970 390 aa11.58□□□□□ -0.56
Ccdc40-201ENSMUST00000035935 Smc1aQ9CU62 1233 aaKnown RBP11.58□□□□□ -0.56
Ccdc40-201ENSMUST00000035935 Bpifb4A2BGH0 617 aa11.58□□□□□ -0.56
Ccdc40-201ENSMUST00000035935 Akr1c19G3X9Y6 323 aa11.58□□□□□ -0.56
Ccdc40-201ENSMUST00000035935 Map2k1P31938 393 aa11.58□□□□□ -0.56
Ccdc40-201ENSMUST00000035935 Pfkfb1P70266 471 aa11.58□□□□□ -0.56
Ccdc40-201ENSMUST00000035935 Znf667Q2TL60 609 aa11.58□□□□□ -0.56
Ccdc40-201ENSMUST00000035935 Fchsd1Q6PFY1 688 aa11.58□□□□□ -0.56
Ccdc40-201ENSMUST00000035935 Ccdc113Q8C5T8 377 aa11.58□□□□□ -0.56
Ccdc40-201ENSMUST00000035935 Bola3Q8CEI1 110 aa11.58□□□□□ -0.56
Ccdc40-201ENSMUST00000035935 Nfil3O08750 462 aa11.58□□□□□ -0.56
Ccdc40-201ENSMUST00000035935 Tcerg1lQ3B807 590 aa11.58□□□□□ -0.56
Ccdc40-201ENSMUST00000035935 Kif22Q3V300 660 aa11.58□□□□□ -0.56
Ccdc40-201ENSMUST00000035935 Atp1a3Q6PIC6 1013 aa11.58□□□□□ -0.56
Ccdc40-201ENSMUST00000035935 RgmbQ7TQ33 436 aa11.58□□□□□ -0.56
Ccdc40-201ENSMUST00000035935 Znf771Q8BJ90 317 aa11.58□□□□□ -0.56
Ccdc40-201ENSMUST00000035935 Hirip3Q8BLH7 601 aa11.58□□□□□ -0.56
Ccdc40-201ENSMUST00000035935 Ncoa5Q91W39 579 aaKnown RBP11.58□□□□□ -0.56
Ccdc40-201ENSMUST00000035935 Kif2cQ922S8 721 aa11.58□□□□□ -0.56
Ccdc40-201ENSMUST00000035935 Ubxn1Q922Y1 297 aa11.58□□□□□ -0.56
Ccdc40-201ENSMUST00000035935 FliiQ9JJ28 1271 aa11.58□□□□□ -0.56
Ccdc40-201ENSMUST00000035935 Il15P48346 162 aa11.58□□□□□ -0.56
Ccdc40-201ENSMUST00000035935 NapgQ9CWZ7 312 aa11.58□□□□□ -0.56
Ccdc40-201ENSMUST00000035935 Qtrt2B8ZXI1 415 aa11.57□□□□□ -0.56
Ccdc40-201ENSMUST00000035935 Pde8bE9Q4S1 865 aa11.57□□□□□ -0.56
Ccdc40-201ENSMUST00000035935 Ube4aE9Q735 1028 aa11.57□□□□□ -0.56
Ccdc40-201ENSMUST00000035935 Pank2Q3U4S0 443 aa11.57□□□□□ -0.56
Ccdc40-201ENSMUST00000035935 Trak2Q6P9N8 913 aa11.57□□□□□ -0.56
Ccdc40-201ENSMUST00000035935 Slc44a1Q6X893 653 aa11.57□□□□□ -0.56
Ccdc40-201ENSMUST00000035935 Spocd1B1ASB6 936 aa11.57□□□□□ -0.56
Ccdc40-201ENSMUST00000035935 Plcb3P51432 1234 aaKnown RBP11.57□□□□□ -0.56
Ccdc40-201ENSMUST00000035935 Ccdc174Q3U155 467 aa11.57□□□□□ -0.56
Ccdc40-201ENSMUST00000035935 Camsap3Q80VC9 1252 aa11.57□□□□□ -0.56
Ccdc40-201ENSMUST00000035935 Ubac1Q8VDI7 409 aa11.57□□□□□ -0.56
Ccdc40-201ENSMUST00000035935 AdpgkQ8VDL4 496 aa11.57□□□□□ -0.56
Ccdc40-201ENSMUST00000035935 Znf541Q0GGX2 1363 aa11.57□□□□□ -0.56
Ccdc40-201ENSMUST00000035935 ByslO54825 436 aaKnown RBP11.57□□□□□ -0.56
Ccdc40-201ENSMUST00000035935 Abcb4P21440 1276 aa11.57□□□□□ -0.56
Ccdc40-201ENSMUST00000035935 Opa1P58281 960 aa11.57□□□□□ -0.56
Ccdc40-201ENSMUST00000035935 Iffo1Q8BXL9 562 aa11.57□□□□□ -0.56
Ccdc40-201ENSMUST00000035935 DonsonQ9QXP4 560 aa11.57□□□□□ -0.56
Ccdc40-201ENSMUST00000035935 Pard3Q99NH2 1333 aa11.57□□□□□ -0.56
Ccdc40-201ENSMUST00000035935 Ptgs1P22437 602 aa11.57□□□□□ -0.56
Ccdc40-201ENSMUST00000035935 Rps8P62242 208 aaKnown RBP11.57□□□□□ -0.56
Ccdc40-201ENSMUST00000035935 Cdcp1Q5U462 833 aa11.57□□□□□ -0.56
Ccdc40-201ENSMUST00000035935 Mcm7Q61881 719 aaKnown RBP11.57□□□□□ -0.56
Ccdc40-201ENSMUST00000035935 Usp42B2RQC2 1324 aaKnown RBP11.56□□□□□ -0.56
Ccdc40-201ENSMUST00000035935 Zfp42P22227 288 aa11.56□□□□□ -0.56
Ccdc40-201ENSMUST00000035935 Traf1P39428 409 aa11.56□□□□□ -0.56
Ccdc40-201ENSMUST00000035935 Asic3Q6X1Y6 530 aa11.56□□□□□ -0.56
Ccdc40-201ENSMUST00000035935 Parp1P11103 1013 aaKnown RBP11.56□□□□□ -0.56
Ccdc40-201ENSMUST00000035935 Kcnj4P52189 445 aa11.56□□□□□ -0.56
Ccdc40-201ENSMUST00000035935 Gbp8Q2V6D6 525 aa11.56□□□□□ -0.56
Ccdc40-201ENSMUST00000035935 Gpbp1Q6NXH3 473 aaKnown RBP11.56□□□□□ -0.56
Ccdc40-201ENSMUST00000035935 Ccdc148Q6P5U8 527 aa11.56□□□□□ -0.56
Ccdc40-201ENSMUST00000035935 Map3k11Q80XI6 850 aa11.56□□□□□ -0.56
Ccdc40-201ENSMUST00000035935 Mknk2Q8CDB0 459 aa11.56□□□□□ -0.56
Ccdc40-201ENSMUST00000035935 Tab2Q99K90 693 aa11.56□□□□□ -0.56
Ccdc40-201ENSMUST00000035935 LpxnQ99N69 386 aa11.56□□□□□ -0.56
Ccdc40-201ENSMUST00000035935 Ccdc157Q5SPX1 718 aa11.56□□□□□ -0.56
Ccdc40-201ENSMUST00000035935 Pde1cQ64338 706 aa11.56□□□□□ -0.56
Ccdc40-201ENSMUST00000035935 Kcnj14Q8JZN3 434 aa11.56□□□□□ -0.56
Ccdc40-201ENSMUST00000035935 StrbpQ91WM1 672 aaKnown RBP11.56□□□□□ -0.56
Ccdc40-201ENSMUST00000035935 Ctnnbl1Q9CWL8 563 aaKnown RBP11.56□□□□□ -0.56
Ccdc40-201ENSMUST00000035935 PigbQ9JJQ0 542 aa11.56□□□□□ -0.56
Ccdc40-201ENSMUST00000035935 Ttc37F8VPK0 1563 aa11.56□□□□□ -0.56
Ccdc40-201ENSMUST00000035935 ArsiQ32KI9 573 aa11.56□□□□□ -0.56
Ccdc40-201ENSMUST00000035935 Tmed8Q3UHI4 326 aa11.56□□□□□ -0.56
Ccdc40-201ENSMUST00000035935 Ddx17Q501J6 650 aaKnown RBP11.56□□□□□ -0.56
Ccdc40-201ENSMUST00000035935 Nid2O88322 1403 aa11.55□□□□□ -0.56
Ccdc40-201ENSMUST00000035935 Akap12Q9WTQ5 1684 aa11.55□□□□□ -0.56
Ccdc40-201ENSMUST00000035935 Cyp3a57D3YYZ0 503 aa11.55□□□□□ -0.56
Ccdc40-201ENSMUST00000035935 Pdrg1P59048 133 aa11.55□□□□□ -0.56
Ccdc40-201ENSMUST00000035935 Stmn4P63042 189 aa11.55□□□□□ -0.56
Ccdc40-201ENSMUST00000035935 Ccpg1Q640L3 753 aa11.55□□□□□ -0.56
Ccdc40-201ENSMUST00000035935 Gramd4Q8CB44 633 aa11.55□□□□□ -0.56
Ccdc40-201ENSMUST00000035935 Matr3Q8K310 846 aaKnown RBP11.55□□□□□ -0.56
Ccdc40-201ENSMUST00000035935 Atp1a4Q9WV27 1032 aa11.55□□□□□ -0.56
Ccdc40-201ENSMUST00000035935 Pde11aP0C1Q2 933 aa11.55□□□□□ -0.56
Ccdc40-201ENSMUST00000035935 VrtnQ3SYK4 740 aa11.55□□□□□ -0.56
Ccdc40-201ENSMUST00000035935 Lrsam1Q80ZI6 727 aa11.55□□□□□ -0.56
Ccdc40-201ENSMUST00000035935 HmcesQ8R1M0 353 aaKnown RBP11.55□□□□□ -0.56
Ccdc40-201ENSMUST00000035935 Mroh1E0CZ22 1640 aa11.55□□□□□ -0.56
Ccdc40-201ENSMUST00000035935 Rhpn1Q61085 643 aa11.55□□□□□ -0.56
Ccdc40-201ENSMUST00000035935 Csrnp2Q8BGQ2 534 aa11.55□□□□□ -0.56
Ccdc40-201ENSMUST00000035935 Spata31d1bE9QA57 1361 aa11.55□□□□□ -0.56
Ccdc40-201ENSMUST00000035935 Ttll7A4Q9F0 912 aa11.55□□□□□ -0.56
Retrieved 100 of 22,080 RNA–protein pairs in 61.8 ms