RNA–Protein interactions for RNA: YPR110C

RPC40, Transcript of RNA polymerase subunit AC40, yeastyeast

Gene RPC40, Length 1,008 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RPC40YPR110C SET1P38827 1080 aaKnown RBP6.1□□□□□ -1.43
RPC40YPR110C YPR148CQ06523 435 aa6.09□□□□□ -1.43
RPC40YPR110C SAP30P38429 201 aa6.08□□□□□ -1.44
RPC40YPR110C IFH1P39520 1085 aa6.07□□□□□ -1.44
RPC40YPR110C HTA1P04911 132 aaKnown RBP6.06□□□□□ -1.44
RPC40YPR110C HTA2P04912 132 aa6.06□□□□□ -1.44
RPC40YPR110C YDR344CQ05510 147 aa6.05□□□□□ -1.44
RPC40YPR110C NOP53Q12080 455 aaKnown RBP6.05□□□□□ -1.44
RPC40YPR110C YEL023CP39992 682 aa6.04□□□□□ -1.44
RPC40YPR110C EDS1P38073 919 aa6.03□□□□□ -1.44
RPC40YPR110C TFG1P41895 735 aaPredicted RBP6.03□□□□□ -1.44
RPC40YPR110C CKB1P43639 278 aa6.03□□□□□ -1.44
RPC40YPR110C JIP4Q03361 876 aa6.03□□□□□ -1.44
RPC40YPR110C ABP1P15891 592 aaKnown RBP6.02□□□□□ -1.45
RPC40YPR110C YDL129WQ07555 291 aa6.02□□□□□ -1.45
RPC40YPR110C MIF2P35201 549 aa6.01□□□□□ -1.45
RPC40YPR110C COQ8P27697 501 aa6□□□□□ -1.45
RPC40YPR110C PTC4P38089 393 aa6□□□□□ -1.45
RPC40YPR110C VPS70P47161 811 aa6□□□□□ -1.45
RPC40YPR110C GRE2Q12068 342 aaKnown RBP5.99□□□□□ -1.45
RPC40YPR110C PTC3P34221 468 aaKnown RBP5.97□□□□□ -1.45
RPC40YPR110C TAF7Q05021 590 aa5.96□□□□□ -1.46
RPC40YPR110C PML39Q03760 334 aa5.95□□□□□ -1.46
RPC40YPR110C PRE3P38624 215 aa5.94□□□□□ -1.46
RPC40YPR110C ATH1P48016 1211 aa5.94□□□□□ -1.46
RPC40YPR110C NST1P53935 1240 aa5.94□□□□□ -1.46
RPC40YPR110C CHL1P22516 861 aaPredicted RBP5.93□□□□□ -1.46
RPC40YPR110C SPB4P25808 606 aaPredicted RBP5.93□□□□□ -1.46
RPC40YPR110C SOL3P38858 249 aa5.93□□□□□ -1.46
RPC40YPR110C BCK2P33306 851 aa5.92□□□□□ -1.46
RPC40YPR110C RPN1P38764 993 aaKnown RBP5.92□□□□□ -1.46
RPC40YPR110C GUT1P32190 709 aa5.91□□□□□ -1.46
RPC40YPR110C DSF2P38213 736 aa5.91□□□□□ -1.46
RPC40YPR110C MID1P41821 548 aa5.91□□□□□ -1.46
RPC40YPR110C ILV3P39522 585 aaKnown RBP5.9□□□□□ -1.46
RPC40YPR110C PBS2P08018 668 aa5.87□□□□□ -1.47
RPC40YPR110C REF2P42073 533 aaPredicted RBP5.87□□□□□ -1.47
RPC40YPR110C ELP4Q02884 456 aaKnown RBP5.86□□□□□ -1.47
RPC40YPR110C VRP1P37370 817 aa5.84□□□□□ -1.47
RPC40YPR110C MAK21Q12176 1025 aaKnown RBP5.82□□□□□ -1.48
RPC40YPR110C MPH3P0CE00 602 aa5.81□□□□□ -1.48
RPC40YPR110C YNR021WP53723 404 aaKnown RBP5.81□□□□□ -1.48
RPC40YPR110C COX6P00427 148 aa5.8□□□□□ -1.48
RPC40YPR110C ARH1P48360 493 aa5.8□□□□□ -1.48
RPC40YPR110C MAM3Q12296 706 aa5.8□□□□□ -1.48
RPC40YPR110C AI4P03878 556 aa5.79□□□□□ -1.48
RPC40YPR110C PEX29Q03370 554 aa5.79□□□□□ -1.48
RPC40YPR110C YGR273CP53329 174 aa5.78□□□□□ -1.48
RPC40YPR110C UBP14P38237 781 aaKnown RBP5.77□□□□□ -1.49
RPC40YPR110C XDJ1P39102 459 aa5.76□□□□□ -1.49
RPC40YPR110C NUP42P49686 430 aaKnown RBP5.76□□□□□ -1.49
RPC40YPR110C IES2P40154 320 aa5.75□□□□□ -1.49
RPC40YPR110C YDR090CQ03193 310 aa5.75□□□□□ -1.49
RPC40YPR110C YLR326WQ06170 240 aaKnown RBP5.74□□□□□ -1.49
RPC40YPR110C MPC54Q08550 464 aa5.74□□□□□ -1.49
RPC40YPR110C AIM7Q12156 149 aa5.74□□□□□ -1.49
RPC40YPR110C DIT2P21595 489 aa5.73□□□□□ -1.49
RPC40YPR110C SPT23P35210 1082 aa5.72□□□□□ -1.49
RPC40YPR110C SLI15P38283 698 aa5.72□□□□□ -1.49
RPC40YPR110C VHR2P40041 505 aa5.72□□□□□ -1.49
RPC40YPR110C HAP5Q02516 242 aa5.72□□□□□ -1.49
RPC40YPR110C KIN1P13185 1064 aa5.7□□□□□ -1.5
RPC40YPR110C DMA2P53924 522 aa5.7□□□□□ -1.5
RPC40YPR110C DPS1P04802 557 aaKnown RBP5.69□□□□□ -1.5
RPC40YPR110C KEX1P09620 729 aa5.69□□□□□ -1.5
RPC40YPR110C GLC3P32775 704 aa5.69□□□□□ -1.5
RPC40YPR110C RAD54P32863 898 aa5.67□□□□□ -1.5
RPC40YPR110C KIC1P38692 1080 aa5.67□□□□□ -1.5
RPC40YPR110C BNI4P53858 892 aa5.67□□□□□ -1.5
RPC40YPR110C NMA111P53920 997 aa5.67□□□□□ -1.5
RPC40YPR110C PCS60P38137 543 aaKnown RBP RIP-Chip data5.66□□□□□ -1.5not detected
RPC40YPR110C YPR015CQ12531 247 aa5.66□□□□□ -1.5
RPC40YPR110C PTC2P39966 464 aaKnown RBP5.65□□□□□ -1.5
RPC40YPR110C PSE1P32337 1089 aaKnown RBP5.64□□□□□ -1.51
RPC40YPR110C ATF2P53296 535 aa5.64□□□□□ -1.51
RPC40YPR110C DPL1Q05567 589 aa5.64□□□□□ -1.51
RPC40YPR110C CDC73Q06697 393 aa5.64□□□□□ -1.51
RPC40YPR110C YML082WQ04533 649 aaKnown RBP5.63□□□□□ -1.51
RPC40YPR110C SRC1Q03707 834 aa5.62□□□□□ -1.51
RPC40YPR110C RAM1P22007 431 aa5.61□□□□□ -1.51
RPC40YPR110C ORC6P38826 435 aa5.61□□□□□ -1.51
RPC40YPR110C GUA1P38625 525 aaKnown RBP5.59□□□□□ -1.51
RPC40YPR110C PDR1P12383 1068 aa5.58□□□□□ -1.52
RPC40YPR110C GAP1P19145 602 aaPredicted RBP5.58□□□□□ -1.52
RPC40YPR110C RAS1P01119 309 aa5.57□□□□□ -1.52
RPC40YPR110C HGH1P48362 394 aaKnown RBP5.57□□□□□ -1.52
RPC40YPR110C HPC2Q01448 625 aa5.57□□□□□ -1.52
RPC40YPR110C ISU2Q12056 156 aa5.56□□□□□ -1.52
RPC40YPR110C RGR1P19263 1082 aa5.55□□□□□ -1.52
RPC40YPR110C CSC1Q06538 782 aa5.55□□□□□ -1.52
RPC40YPR110C RLF2Q12495 606 aa5.54□□□□□ -1.52
RPC40YPR110C RPP1BP10622 106 aaKnown RBP5.53□□□□□ -1.52
RPC40YPR110C CLB5P30283 435 aa5.53□□□□□ -1.52
RPC40YPR110C MVP1P40959 511 aaKnown RBP5.53□□□□□ -1.52
RPC40YPR110C TEA1P47988 759 aa5.53□□□□□ -1.52
RPC40YPR110C SSA2P10592 639 aaKnown RBP5.51□□□□□ -1.53
RPC40YPR110C SDH2P21801 266 aa5.51□□□□□ -1.53
RPC40YPR110C TFB4Q12004 338 aa5.51□□□□□ -1.53
RPC40YPR110C CSN12P47130 423 aa5.5□□□□□ -1.53
RPC40YPR110C TFB3Q03290 321 aa5.48□□□□□ -1.53
Retrieved 100 of 5,963 RNA–protein pairs in 10.8 ms