RNA–Protein interactions for RNA: YLR221C

RSA3, Transcript of Protein with a likely role in ribosomal maturation, yeast

Gene RSA3, Length 663 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RSA3	YLR221C	JIP4	Q03361	876 aa		11.44	□□□□□ -0.58
RSA3	YLR221C	DAN4	P47179	1161 aa		11.43	□□□□□ -0.58
RSA3	YLR221C	GRE2	Q12068	342 aa	Known RBP	11.42	□□□□□ -0.58
RSA3	YLR221C	EDS1	P38073	919 aa		11.41	□□□□□ -0.58
RSA3	YLR221C	TFG1	P41895	735 aa	Predicted RBP	11.41	□□□□□ -0.58
RSA3	YLR221C	YEL023C	P39992	682 aa		11.4	□□□□□ -0.58
RSA3	YLR221C	PTC3	P34221	468 aa	Known RBP	11.37	□□□□□ -0.59
RSA3	YLR221C	COQ8	P27697	501 aa		11.36	□□□□□ -0.59
RSA3	YLR221C	PTC4	P38089	393 aa		11.36	□□□□□ -0.59
RSA3	YLR221C	ATH1	P48016	1211 aa		11.34	□□□□□ -0.59
RSA3	YLR221C	SAP30	P38429	201 aa		11.32	□□□□□ -0.6
RSA3	YLR221C	GUT1	P32190	709 aa		11.3	□□□□□ -0.6
RSA3	YLR221C	YDL129W	Q07555	291 aa		11.3	□□□□□ -0.6
RSA3	YLR221C	PML39	Q03760	334 aa		11.17	□□□□□ -0.62
RSA3	YLR221C	SOL3	P38858	249 aa		11.16	□□□□□ -0.62
RSA3	YLR221C	NST1	P53935	1240 aa		11.16	□□□□□ -0.62
RSA3	YLR221C	NOP53	Q12080	455 aa	Known RBP	11.14	□□□□□ -0.63
RSA3	YLR221C	CHL1	P22516	861 aa	Predicted RBP	11.12	□□□□□ -0.63
RSA3	YLR221C	PRE3	P38624	215 aa		11.12	□□□□□ -0.63
RSA3	YLR221C	AI4	P03878	556 aa		11.06	□□□□□ -0.64
RSA3	YLR221C	MPH3	P0CE00	602 aa		11.06	□□□□□ -0.64
RSA3	YLR221C	YDR344C	Q05510	147 aa		11.06	□□□□□ -0.64
RSA3	YLR221C	MID1	P41821	548 aa		11.05	□□□□□ -0.64
RSA3	YLR221C	ILV3	P39522	585 aa	Known RBP	11.03	□□□□□ -0.64
RSA3	YLR221C	YGR273C	P53329	174 aa		11.03	□□□□□ -0.64
RSA3	YLR221C	BCK2	P33306	851 aa		11.01	□□□□□ -0.65
RSA3	YLR221C	ELP4	Q02884	456 aa	Known RBP	11	□□□□□ -0.65
RSA3	YLR221C	SET1	P38827	1080 aa	Known RBP	10.99	□□□□□ -0.65
RSA3	YLR221C	PEX29	Q03370	554 aa		10.97	□□□□□ -0.65
RSA3	YLR221C	ARH1	P48360	493 aa		10.95	□□□□□ -0.66
RSA3	YLR221C	VRP1	P37370	817 aa		10.87	□□□□□ -0.67
RSA3	YLR221C	SLI15	P38283	698 aa		10.85	□□□□□ -0.67
RSA3	YLR221C	MPC54	Q08550	464 aa		10.85	□□□□□ -0.67
RSA3	YLR221C	HAP5	Q02516	242 aa		10.84	□□□□□ -0.67
RSA3	YLR221C	KEX1	P09620	729 aa		10.83	□□□□□ -0.68
RSA3	YLR221C	SPT23	P35210	1082 aa		10.82	□□□□□ -0.68
RSA3	YLR221C	SAS10	Q12136	610 aa	Predicted RBP	10.81	□□□□□ -0.68
RSA3	YLR221C	XDJ1	P39102	459 aa		10.77	□□□□□ -0.69
RSA3	YLR221C	VHR2	P40041	505 aa		10.76	□□□□□ -0.69
RSA3	YLR221C	YLR326W	Q06170	240 aa	Known RBP	10.76	□□□□□ -0.69
RSA3	YLR221C	BNI4	P53858	892 aa		10.75	□□□□□ -0.69
RSA3	YLR221C	UBP14	P38237	781 aa	Known RBP	10.74	□□□□□ -0.69
RSA3	YLR221C	LEO1	P38439	464 aa		10.74	□□□□□ -0.69
RSA3	YLR221C	NMA111	P53920	997 aa		10.74	□□□□□ -0.69
RSA3	YLR221C	DPL1	Q05567	589 aa		10.74	□□□□□ -0.69
RSA3	YLR221C	PTC2	P39966	464 aa	Known RBP	10.71	□□□□□ -0.69
RSA3	YLR221C	IFH1	P39520	1085 aa		10.7	□□□□□ -0.7
RSA3	YLR221C	CDC73	Q06697	393 aa		10.68	□□□□□ -0.7
RSA3	YLR221C	PCS60	P38137	543 aa	Known RBP RIP-Chip data	10.67	□□□□□ -0.7	RIP-Chip
RSA3	YLR221C	RAD54	P32863	898 aa		10.66	□□□□□ -0.7
RSA3	YLR221C	YML082W	Q04533	649 aa	Known RBP	10.66	□□□□□ -0.7
RSA3	YLR221C	LEU3	P08638	886 aa		10.64	□□□□□ -0.71
RSA3	YLR221C	TAF7	Q05021	590 aa		10.63	□□□□□ -0.71
RSA3	YLR221C	YPR148C	Q06523	435 aa		10.63	□□□□□ -0.71
RSA3	YLR221C	ISU2	Q12056	156 aa		10.63	□□□□□ -0.71
RSA3	YLR221C	YDR090C	Q03193	310 aa		10.59	□□□□□ -0.71
RSA3	YLR221C	DPS1	P04802	557 aa	Known RBP	10.55	□□□□□ -0.72
RSA3	YLR221C	KIC1	P38692	1080 aa		10.55	□□□□□ -0.72
RSA3	YLR221C	REF2	P42073	533 aa	Predicted RBP	10.55	□□□□□ -0.72
RSA3	YLR221C	VPS70	P47161	811 aa		10.55	□□□□□ -0.72
RSA3	YLR221C	YPR015C	Q12531	247 aa		10.55	□□□□□ -0.72
RSA3	YLR221C	RPP1B	P10622	106 aa	Known RBP	10.53	□□□□□ -0.72
RSA3	YLR221C	RAM1	P22007	431 aa		10.53	□□□□□ -0.72
RSA3	YLR221C	PDR1	P12383	1068 aa		10.5	□□□□□ -0.73
RSA3	YLR221C	CKB1	P43639	278 aa		10.44	□□□□□ -0.74
RSA3	YLR221C	PEX21	P50091	288 aa		10.42	□□□□□ -0.74
RSA3	YLR221C	GYP1	Q08484	637 aa		10.41	□□□□□ -0.74
RSA3	YLR221C	GAP1	P19145	602 aa	Predicted RBP	10.39	□□□□□ -0.75
RSA3	YLR221C	YRR1	Q12172	810 aa		10.38	□□□□□ -0.75
RSA3	YLR221C	MAK21	Q12176	1025 aa	Known RBP	10.38	□□□□□ -0.75
RSA3	YLR221C	COX6	P00427	148 aa		10.37	□□□□□ -0.75
RSA3	YLR221C	CSC1	Q06538	782 aa		10.37	□□□□□ -0.75
RSA3	YLR221C	ORC6	P38826	435 aa		10.36	□□□□□ -0.75
RSA3	YLR221C	SPB4	P25808	606 aa	Predicted RBP	10.35	□□□□□ -0.75
RSA3	YLR221C	TFB4	Q12004	338 aa		10.35	□□□□□ -0.75
RSA3	YLR221C	RPN1	P38764	993 aa	Known RBP	10.33	□□□□□ -0.76
RSA3	YLR221C	TUM1	Q08686	304 aa	Known RBP	10.33	□□□□□ -0.76
RSA3	YLR221C	RAS1	P01119	309 aa		10.3	□□□□□ -0.76
RSA3	YLR221C	SAS4	Q04003	481 aa		10.3	□□□□□ -0.76
RSA3	YLR221C	SRC1	Q03707	834 aa		10.28	□□□□□ -0.76
RSA3	YLR221C	BUD20	Q08004	166 aa	Predicted RBP	10.28	□□□□□ -0.76
RSA3	YLR221C	STR2	P47164	639 aa		10.27	□□□□□ -0.77
RSA3	YLR221C	NUD1	P32336	851 aa		10.26	□□□□□ -0.77
RSA3	YLR221C	PBS2	P08018	668 aa		10.25	□□□□□ -0.77
RSA3	YLR221C	SDH2	P21801	266 aa		10.25	□□□□□ -0.77
RSA3	YLR221C	MVP1	P40959	511 aa	Known RBP	10.25	□□□□□ -0.77
RSA3	YLR221C	ISM1	P48526	1002 aa		10.25	□□□□□ -0.77
RSA3	YLR221C	PRT1	P06103	763 aa	Known RBP	10.24	□□□□□ -0.77
RSA3	YLR221C	AMS1	P22855	1083 aa		10.23	□□□□□ -0.77
RSA3	YLR221C	NPL4	P33755	580 aa		10.2	□□□□□ -0.78
RSA3	YLR221C	RGR1	P19263	1082 aa		10.19	□□□□□ -0.78
RSA3	YLR221C	DSF2	P38213	736 aa		10.18	□□□□□ -0.78
RSA3	YLR221C	YPR109W	Q06104	294 aa		10.18	□□□□□ -0.78
RSA3	YLR221C	MRF1	P30775	413 aa	Predicted RBP	10.16	□□□□□ -0.78
RSA3	YLR221C	YEL077C	Q3E7X8	1277 aa		10.16	□□□□□ -0.78
RSA3	YLR221C	GCD11	P32481	527 aa	Known RBP	10.14	□□□□□ -0.79
RSA3	YLR221C	TY1A-DR4	O74302	440 aa		10.12	□□□□□ -0.79
RSA3	YLR221C	TY1A-H	P0C2I4	478 aa	Known RBP	10.12	□□□□□ -0.79
RSA3	YLR221C	TY1A-A	P0CX57	440 aa		10.12	□□□□□ -0.79
RSA3	YLR221C	TY1A-PR1	P0CX58	440 aa		10.12	□□□□□ -0.79

Retrieved 100 of 5,963 RNA–protein pairs in 13.6 ms