RNA–Protein interactions for RNA: ENST00000640501.1

PNKP-231, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 151 nt, Biotype non stop decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-231ENST00000640501 DNAJC5BQ9UF47 199 aa12.61□□□□□ -0.39
PNKP-231ENST00000640501 GRIN2BQ13224 1484 aa12.59□□□□□ -0.39
PNKP-231ENST00000640501 TTBK1Q5TCY1 1321 aaPredicted RBP12.58□□□□□ -0.4
PNKP-231ENST00000640501 FMN1Q68DA7 1419 aa12.57□□□□□ -0.4
PNKP-231ENST00000640501 AQRO60306 1485 aaKnown RBP eCLIP12.57□□□□□ -0.4
PNKP-231ENST00000640501 FYCO1Q9BQS8 1478 aa12.56□□□□□ -0.4
PNKP-231ENST00000640501 ADAMTS12P58397 1594 aa12.56□□□□□ -0.4
PNKP-231ENST00000640501 TIAM1Q13009 1591 aa12.56□□□□□ -0.4
PNKP-231ENST00000640501 CCER1Q8TC90 406 aaPredicted RBP12.55□□□□□ -0.4
PNKP-231ENST00000640501 THOC2Q8NI27 1593 aaKnown RBP12.55□□□□□ -0.4
PNKP-231ENST00000640501 CFAP43Q8NDM7 1665 aa12.54□□□□□ -0.4
PNKP-231ENST00000640501 SAMD9Q5K651 1589 aa12.53□□□□□ -0.4
PNKP-231ENST00000640501 CASKIN1Q8WXD9 1431 aa12.51□□□□□ -0.41
PNKP-231ENST00000640501 PCF11O94913 1555 aaKnown RBP12.51□□□□□ -0.41
PNKP-231ENST00000640501 IQGAP2Q13576 1575 aa12.51□□□□□ -0.41
PNKP-231ENST00000640501 EIF4G3O43432 1585 aaKnown RBP12.5□□□□□ -0.41
PNKP-231ENST00000640501 MAGI1Q96QZ7 1491 aaPredicted RBP12.48□□□□□ -0.41
PNKP-231ENST00000640501 LRRC9Q6ZRR7 1453 aa12.47□□□□□ -0.41
PNKP-231ENST00000640501 RRBP1Q9P2E9 1410 aaKnown RBP12.47□□□□□ -0.41
PNKP-231ENST00000640501 FHOD3Q2V2M9 1422 aa12.46□□□□□ -0.41
PNKP-231ENST00000640501 CCDC18Q5T9S5 1454 aa12.44□□□□□ -0.42
PNKP-231ENST00000640501 CCNB3Q8WWL7 1395 aa12.43□□□□□ -0.42
PNKP-231ENST00000640501 SNAPC4Q5SXM2 1469 aa12.43□□□□□ -0.42
PNKP-231ENST00000640501 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.43□□□□□ -0.42
PNKP-231ENST00000640501 KANK4Q5T7N3 995 aaPredicted RBP12.43□□□□□ -0.42
PNKP-231ENST00000640501 HECW1Q76N89 1606 aa12.43□□□□□ -0.42
PNKP-231ENST00000640501 KIAA0586Q9BVV6 1533 aa12.42□□□□□ -0.42
PNKP-231ENST00000640501 UGGT2Q9NYU1 1516 aa12.42□□□□□ -0.42
PNKP-231ENST00000640501 ZNF608Q9ULD9 1512 aaPredicted RBP12.42□□□□□ -0.42
PNKP-231ENST00000640501 GRIN2AQ12879 1464 aa12.42□□□□□ -0.42
PNKP-231ENST00000640501 P3H3Q8IVL6 736 aa12.42□□□□□ -0.42
PNKP-231ENST00000640501 ATP1B4Q9UN42 357 aaPredicted RBP12.42□□□□□ -0.42
PNKP-231ENST00000640501 SYNJ2O15056 1496 aa12.41□□□□□ -0.42
PNKP-231ENST00000640501 HNRNPUL2Q1KMD3 747 aaKnown RBP12.41□□□□□ -0.42
PNKP-231ENST00000640501 CLSPNQ9HAW4 1339 aa12.39□□□□□ -0.43
PNKP-231ENST00000640501 EHBP1L1Q8N3D4 1523 aa12.37□□□□□ -0.43
PNKP-231ENST00000640501 SUPT6HQ7KZ85 1726 aaKnown RBP12.37□□□□□ -0.43
PNKP-231ENST00000640501 CHMP7Q8WUX9 453 aaPredicted RBP12.37□□□□□ -0.43
PNKP-231ENST00000640501 MTUS2Q5JR59 1369 aa12.37□□□□□ -0.43
PNKP-231ENST00000640501 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.37□□□□□ -0.43
PNKP-231ENST00000640501 KIAA0556O60303 1618 aa12.35□□□□□ -0.43
PNKP-231ENST00000640501 CARMIL2Q6F5E8 1435 aa12.34□□□□□ -0.43
PNKP-231ENST00000640501 LRRIQ1Q96JM4 1722 aa12.3□□□□□ -0.44
PNKP-231ENST00000640501 NUP160Q12769 1436 aa12.29□□□□□ -0.44
PNKP-231ENST00000640501 CDK11AQ9UQ88 783 aaPredicted RBP12.29□□□□□ -0.44
PNKP-231ENST00000640501 PHLDB1Q86UU1 1377 aa12.29□□□□□ -0.44
PNKP-231ENST00000640501 EPRSP07814 1512 aaKnown RBP12.28□□□□□ -0.44
PNKP-231ENST00000640501 CEP170Q5SW79 1584 aa12.28□□□□□ -0.44
PNKP-231ENST00000640501 RAPGEF6Q8TEU7 1601 aa12.28□□□□□ -0.44
PNKP-231ENST00000640501 DISP1Q96F81 1524 aa12.27□□□□□ -0.44
PNKP-231ENST00000640501 FBLN2P98095 1184 aa12.27□□□□□ -0.45
PNKP-231ENST00000640501 FAM50AQ14320 339 aaKnown RBP12.27□□□□□ -0.45
PNKP-231ENST00000640501 MYOM3Q5VTT5 1437 aa12.27□□□□□ -0.45
PNKP-231ENST00000640501 FGD6Q6ZV73 1430 aa12.27□□□□□ -0.45
PNKP-231ENST00000640501 NCOA2Q15596 1464 aa12.27□□□□□ -0.45
PNKP-231ENST00000640501 ACIN1Q9UKV3 1341 aaKnown RBP12.25□□□□□ -0.45
PNKP-231ENST00000640501 SETD5Q9C0A6 1442 aa12.25□□□□□ -0.45
PNKP-231ENST00000640501 ITGAEP38570 1179 aa12.23□□□□□ -0.45
PNKP-231ENST00000640501 ARHGEF11O15085 1522 aa12.22□□□□□ -0.45
PNKP-231ENST00000640501 MIA2Q96PC5 1412 aa12.22□□□□□ -0.45
PNKP-231ENST00000640501 DHX57Q6P158 1386 aaKnown RBP12.21□□□□□ -0.45
PNKP-231ENST00000640501 PTPN23Q9H3S7 1636 aa12.21□□□□□ -0.46
PNKP-231ENST00000640501 JPH4Q96JJ6 628 aa12.2□□□□□ -0.46
PNKP-231ENST00000640501 RAB3GAP2Q9H2M9 1393 aa12.19□□□□□ -0.46
PNKP-231ENST00000640501 CHD1O14646 1710 aa12.19□□□□□ -0.46
PNKP-231ENST00000640501 ITSN2Q9NZM3 1697 aa12.19□□□□□ -0.46
PNKP-231ENST00000640501 TCOF1Q13428 1488 aaKnown RBP12.18□□□□□ -0.46
PNKP-231ENST00000640501 CDK13Q14004 1512 aaKnown RBP12.17□□□□□ -0.46
PNKP-231ENST00000640501 NUP153P49790 1475 aaKnown RBP12.17□□□□□ -0.46
PNKP-231ENST00000640501 MAGI3Q5TCQ9 1506 aa12.16□□□□□ -0.46
PNKP-231ENST00000640501 ADCY10Q96PN6 1610 aa12.15□□□□□ -0.46
PNKP-231ENST00000640501 HFM1A2PYH4 1435 aa12.14□□□□□ -0.47
PNKP-231ENST00000640501 AKNAQ7Z591 1439 aa12.14□□□□□ -0.47
PNKP-231ENST00000640501 TROQ12816 1431 aaPredicted RBP12.13□□□□□ -0.47
PNKP-231ENST00000640501 TIMELESSQ9UNS1 1208 aa12.13□□□□□ -0.47
PNKP-231ENST00000640501 ABCA8O94911 1581 aa12.13□□□□□ -0.47
PNKP-231ENST00000640501 SHROOM2Q13796 1616 aa12.12□□□□□ -0.47
PNKP-231ENST00000640501 ZNF316A6NFI3 1004 aaPredicted RBP12.12□□□□□ -0.47
PNKP-231ENST00000640501 GCC2Q8IWJ2 1684 aa12.12□□□□□ -0.47
PNKP-231ENST00000640501 PRG4Q92954 1404 aaPredicted RBP12.11□□□□□ -0.47
PNKP-231ENST00000640501 KIF14Q15058 1648 aa12.11□□□□□ -0.47
PNKP-231ENST00000640501 PLB1Q6P1J6 1458 aa12.1□□□□□ -0.47
PNKP-231ENST00000640501 PTPRGP23470 1445 aa12.1□□□□□ -0.47
PNKP-231ENST00000640501 PLEKHD1A6NEE1 506 aa12.09□□□□□ -0.47
PNKP-231ENST00000640501 UACAQ9BZF9 1416 aa12.08□□□□□ -0.48
PNKP-231ENST00000640501 DNMT1P26358 1616 aaKnown RBP12.08□□□□□ -0.48
PNKP-231ENST00000640501 DIEXFQ68CQ4 756 aaKnown RBP12.06□□□□□ -0.48
PNKP-231ENST00000640501 ROCK1Q13464 1354 aa12.05□□□□□ -0.48
PNKP-231ENST00000640501 NAIPQ13075 1403 aa12.05□□□□□ -0.48
PNKP-231ENST00000640501 MAPKBP1O60336 1514 aa12.05□□□□□ -0.48
PNKP-231ENST00000640501 ADGBQ8N7X0 1667 aa12.04□□□□□ -0.48
PNKP-231ENST00000640501 ARID3CA6NKF2 412 aa12.04□□□□□ -0.48
PNKP-231ENST00000640501 CFDP1Q9UEE9 299 aaPredicted RBP12.03□□□□□ -0.48
PNKP-231ENST00000640501 DAPK1P53355 1430 aa12.03□□□□□ -0.48
PNKP-231ENST00000640501 ATP10BO94823 1461 aa12.02□□□□□ -0.48
PNKP-231ENST00000640501 CLASP1Q7Z460 1538 aa12.02□□□□□ -0.48
PNKP-231ENST00000640501 CAMSAP2Q08AD1 1489 aa12.02□□□□□ -0.49
PNKP-231ENST00000640501 ABCC2Q92887 1545 aa12.01□□□□□ -0.49
PNKP-231ENST00000640501 GPATCH8Q9UKJ3 1502 aaKnown RBP12.01□□□□□ -0.49
PNKP-231ENST00000640501 PTPRKQ15262 1439 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 6.8 ms