RNA–Protein interactions for RNA: ENST00000638009.1

CACNA1A-257, Transcript of calcium voltage-gated channel subunit alpha1 A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CACNA1A, Length 8,665 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1A-257ENST00000638009 CFAP44Q96MT7 982 aa25.05■■□□□ 1.6
CACNA1A-257ENST00000638009 SETQ01105 290 aaPredicted RBP25■■□□□ 1.59
CACNA1A-257ENST00000638009 PNNQ9H307 717 aaKnown RBP25■■□□□ 1.59
CACNA1A-257ENST00000638009 GOLGA6L4A6NEF3 574 aa24.99■■□□□ 1.59
CACNA1A-257ENST00000638009 FTSJ3Q8IY81 847 aaKnown RBP24.96■■□□□ 1.59
CACNA1A-257ENST00000638009 TULP1O00294 542 aaPredicted RBP24.95■■□□□ 1.58
CACNA1A-257ENST00000638009 PLCB2Q00722 1185 aa24.94■■□□□ 1.58
CACNA1A-257ENST00000638009 FGD1P98174 961 aa24.93■■□□□ 1.58
CACNA1A-257ENST00000638009 DRC7Q8IY82 874 aa24.93■■□□□ 1.58
CACNA1A-257ENST00000638009 HSP90AB1P08238 724 aaKnown RBP24.9■■□□□ 1.58
CACNA1A-257ENST00000638009 MRS2Q9HD23 443 aa24.88■■□□□ 1.57
CACNA1A-257ENST00000638009 MS4A1P11836 297 aa24.87■■□□□ 1.57
CACNA1A-257ENST00000638009 ARID4BQ4LE39 1312 aaPredicted RBP24.84■■□□□ 1.57
CACNA1A-257ENST00000638009 SALL2Q9Y467 1007 aaPredicted RBP24.84■■□□□ 1.57
CACNA1A-257ENST00000638009 A0A0U1RQG5 324 aaPredicted RBP24.83■■□□□ 1.57
CACNA1A-257ENST00000638009 CCDC34Q96HJ3 373 aa24.83■■□□□ 1.56
CACNA1A-257ENST00000638009 MCCP23508 829 aa24.82■■□□□ 1.56
CACNA1A-257ENST00000638009 AMER1Q5JTC6 1135 aaPredicted RBP24.82■■□□□ 1.56
CACNA1A-257ENST00000638009 CLSTN1O94985 981 aa24.79■■□□□ 1.56
CACNA1A-257ENST00000638009 CFAP53Q96M91 514 aa24.79■■□□□ 1.56
CACNA1A-257ENST00000638009 KAT6BQ8WYB5 2073 aa24.79■■□□□ 1.56
CACNA1A-257ENST00000638009 SYAP1Q96A49 352 aaPredicted RBP24.78■■□□□ 1.56
CACNA1A-257ENST00000638009 NOP58Q9Y2X3 529 aaKnown RBP24.78■■□□□ 1.56
CACNA1A-257ENST00000638009 KCNJ4P48050 445 aa24.78■■□□□ 1.56
CACNA1A-257ENST00000638009 HSCBQ8IWL3 235 aa24.78■■□□□ 1.56
CACNA1A-257ENST00000638009 GOLGA2Q08379 1002 aa24.77■■□□□ 1.56
CACNA1A-257ENST00000638009 CHGAP10645 457 aaKnown RBP24.77■■□□□ 1.56
CACNA1A-257ENST00000638009 SCAF1Q9H7N4 1312 aaKnown RBP24.75■■□□□ 1.55
CACNA1A-257ENST00000638009 DDX10Q13206 875 aaKnown RBP24.75■■□□□ 1.55
CACNA1A-257ENST00000638009 A0A0G2JS52 829 aa24.75■■□□□ 1.55
CACNA1A-257ENST00000638009 HTATSF1O43719 755 aaKnown RBP24.74■■□□□ 1.55
CACNA1A-257ENST00000638009 TPM4P67936 248 aa24.74■■□□□ 1.55
CACNA1A-257ENST00000638009 CDCA8Q53HL2 280 aa24.74■■□□□ 1.55
CACNA1A-257ENST00000638009 FBLN2P98095 1184 aa24.74■■□□□ 1.55
CACNA1A-257ENST00000638009 ZNF777Q9ULD5 760 aaPredicted RBP24.72■■□□□ 1.55
CACNA1A-257ENST00000638009 NCBP3Q53F19 620 aaKnown RBP24.69■■□□□ 1.54
CACNA1A-257ENST00000638009 PRM3Q9NNZ6 103 aa24.69■■□□□ 1.54
CACNA1A-257ENST00000638009 GNL2Q13823 731 aaKnown RBP24.69■■□□□ 1.54
CACNA1A-257ENST00000638009 EIF4G2P78344 907 aaKnown RBP eCLIP24.66■■□□□ 1.54
CACNA1A-257ENST00000638009 NPHP1O15259 732 aa24.64■■□□□ 1.54
CACNA1A-257ENST00000638009 GBP4Q96PP9 640 aa24.64■■□□□ 1.53
CACNA1A-257ENST00000638009 TPRNQ4KMQ1 711 aa24.62■■□□□ 1.53
CACNA1A-257ENST00000638009 PHF14O94880 888 aa24.6■■□□□ 1.53
CACNA1A-257ENST00000638009 RTN4Q9NQC3 1192 aaKnown RBP24.6■■□□□ 1.53
CACNA1A-257ENST00000638009 OS9Q13438 667 aaPredicted RBP24.59■■□□□ 1.53
CACNA1A-257ENST00000638009 NAP1L2Q9ULW6 460 aaPredicted RBP24.58■■□□□ 1.53
CACNA1A-257ENST00000638009 DCAF1Q9Y4B6 1507 aa24.58■■□□□ 1.52
CACNA1A-257ENST00000638009 CSPP1Q1MSJ5 1256 aa24.56■■□□□ 1.52
CACNA1A-257ENST00000638009 CEP89Q96ST8 783 aa24.56■■□□□ 1.52
CACNA1A-257ENST00000638009 NPM1P06748 294 aaKnown RBP eCLIP24.55■■□□□ 1.52
CACNA1A-257ENST00000638009 GPS2Q13227 327 aa24.55■■□□□ 1.52
CACNA1A-257ENST00000638009 HAP1P54257 671 aaPredicted RBP24.53■■□□□ 1.52
CACNA1A-257ENST00000638009 CCDC180Q9P1Z9 1646 aa24.51■■□□□ 1.51
CACNA1A-257ENST00000638009 CCDC70Q6NSX1 233 aa24.51■■□□□ 1.51
CACNA1A-257ENST00000638009 KNSTRNQ9Y448 316 aa24.51■■□□□ 1.51
CACNA1A-257ENST00000638009 MAPK8IP3Q9UPT6 1336 aa24.5■■□□□ 1.51
CACNA1A-257ENST00000638009 RRP12Q5JTH9 1297 aaKnown RBP24.49■■□□□ 1.51
CACNA1A-257ENST00000638009 KIAA1211Q6ZU35 1233 aa24.47■■□□□ 1.51
CACNA1A-257ENST00000638009 C14orf37Q86TY3 774 aa24.47■■□□□ 1.51
CACNA1A-257ENST00000638009 LAS1LQ9Y4W2 734 aaKnown RBP24.47■■□□□ 1.51
CACNA1A-257ENST00000638009 GOLGA6L3A6NEY3 463 aa24.46■■□□□ 1.51
CACNA1A-257ENST00000638009 TPM3P06753 285 aa24.45■■□□□ 1.5
CACNA1A-257ENST00000638009 PPP4R2Q9NY27 417 aa24.45■■□□□ 1.5
CACNA1A-257ENST00000638009 NUDCQ9Y266 331 aa24.45■■□□□ 1.5
CACNA1A-257ENST00000638009 TSPY4P0CV99 314 aa24.41■■□□□ 1.5
CACNA1A-257ENST00000638009 TSPY10P0CW01 314 aa24.41■■□□□ 1.5
CACNA1A-257ENST00000638009 IRX6P78412 446 aaPredicted RBP24.41■■□□□ 1.5
CACNA1A-257ENST00000638009 HSP90AA2PQ14568 343 aaPredicted RBP24.38■■□□□ 1.49
CACNA1A-257ENST00000638009 NOM1Q5C9Z4 860 aaKnown RBP24.38■■□□□ 1.49
CACNA1A-257ENST00000638009 HMMRO75330 724 aa24.37■■□□□ 1.49
CACNA1A-257ENST00000638009 PPP1R15AO75807 674 aaPredicted RBP24.36■■□□□ 1.49
CACNA1A-257ENST00000638009 TSR1Q2NL82 804 aaKnown RBP24.36■■□□□ 1.49
CACNA1A-257ENST00000638009 RSPH6AQ9H0K4 717 aa24.36■■□□□ 1.49
CACNA1A-257ENST00000638009 DEKP35659 375 aaKnown RBP24.35■■□□□ 1.49
CACNA1A-257ENST00000638009 TEX35Q5T0J7 233 aa24.35■■□□□ 1.49
CACNA1A-257ENST00000638009 CHMP4AQ9BY43 222 aa24.32■■□□□ 1.48
CACNA1A-257ENST00000638009 TAOK2Q9UL54 1235 aa24.32■■□□□ 1.48
CACNA1A-257ENST00000638009 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.31■■□□□ 1.48
CACNA1A-257ENST00000638009 RGS3P49796 1198 aa24.3■■□□□ 1.48
CACNA1A-257ENST00000638009 KIF3AQ9Y496 699 aa24.3■■□□□ 1.48
CACNA1A-257ENST00000638009 CALD1Q05682 793 aaKnown RBP24.29■■□□□ 1.48
CACNA1A-257ENST00000638009 KDM2AQ9Y2K7 1162 aa24.28■■□□□ 1.48
CACNA1A-257ENST00000638009 ZBTB7CA1YPR0 619 aa24.28■■□□□ 1.48
CACNA1A-257ENST00000638009 GPATCH3Q96I76 525 aa24.27■■□□□ 1.48
CACNA1A-257ENST00000638009 TPM1P09493 284 aa24.26■■□□□ 1.47
CACNA1A-257ENST00000638009 CHMP4CQ96CF2 233 aa24.24■■□□□ 1.47
CACNA1A-257ENST00000638009 ISY1Q9ULR0 285 aaKnown RBP24.24■■□□□ 1.47
CACNA1A-257ENST00000638009 MTUS2Q5JR59 1369 aa24.24■■□□□ 1.47
CACNA1A-257ENST00000638009 P3H3Q8IVL6 736 aa24.23■■□□□ 1.47
CACNA1A-257ENST00000638009 CDR1P51861 262 aa24.22■■□□□ 1.47
CACNA1A-257ENST00000638009 PLPPR3Q6T4P5 718 aa24.22■■□□□ 1.47
CACNA1A-257ENST00000638009 SUPT16HQ9Y5B9 1047 aaKnown RBP24.21■■□□□ 1.47
CACNA1A-257ENST00000638009 TPM2P07951 284 aa24.21■■□□□ 1.47
CACNA1A-257ENST00000638009 HSP90B1P14625 803 aaKnown RBP24.2■■□□□ 1.46
CACNA1A-257ENST00000638009 CSRNP3Q8WYN3 585 aa24.2■■□□□ 1.46
CACNA1A-257ENST00000638009 ARID3CA6NKF2 412 aa24.19■■□□□ 1.46
CACNA1A-257ENST00000638009 HDAC5Q9UQL6 1122 aa24.19■■□□□ 1.46
CACNA1A-257ENST00000638009 RSF1Q96T23 1441 aaPredicted RBP24.18■■□□□ 1.46
CACNA1A-257ENST00000638009 TMX4Q9H1E5 349 aaPredicted RBP24.17■■□□□ 1.46
CACNA1A-257ENST00000638009 IPO8O15397 1037 aaKnown RBP24.17■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms