RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 MAPKBP1O60336 1514 aa29.86■■■□□ 2.37
CLN3-264ENST00000637985 ERICH3Q5RHP9 1530 aa29.86■■■□□ 2.37
CLN3-264ENST00000637985 DIP2BQ9P265 1576 aa29.83■■■□□ 2.37
CLN3-264ENST00000637985 NPM1P06748 294 aaKnown RBP eCLIP29.83■■■□□ 2.37
CLN3-264ENST00000637985 KDM6BO15054 1643 aa29.78■■■□□ 2.36
CLN3-264ENST00000637985 TOP2BQ02880 1626 aa29.76■■■□□ 2.35
CLN3-264ENST00000637985 BIVM-ERCC5R4GMW8 1640 aa29.76■■■□□ 2.35
CLN3-264ENST00000637985 ADCY10Q96PN6 1610 aa29.73■■■□□ 2.35
CLN3-264ENST00000637985 RUSC2Q8N2Y8 1516 aa29.7■■■□□ 2.34
CLN3-264ENST00000637985 TSPOAP1O95153 1857 aa29.64■■■□□ 2.34
CLN3-264ENST00000637985 KIAA0586Q9BVV6 1533 aa29.48■■■□□ 2.31
CLN3-264ENST00000637985 ADGRL1O94910 1474 aa29.45■■■□□ 2.31
CLN3-264ENST00000637985 PPRC1Q5VV67 1664 aaKnown RBP29.38■■■□□ 2.29
CLN3-264ENST00000637985 PTPRGP23470 1445 aa29.37■■■□□ 2.29
CLN3-264ENST00000637985 SUPT5HO00267 1087 aaKnown RBP29.36■■■□□ 2.29
CLN3-264ENST00000637985 GLI2P10070 1586 aa29.35■■■□□ 2.29
CLN3-264ENST00000637985 ABCC2Q92887 1545 aa29.33■■■□□ 2.29
CLN3-264ENST00000637985 ASXL2Q76L83 1435 aa29.32■■■□□ 2.28
CLN3-264ENST00000637985 HECW2Q9P2P5 1572 aa29.31■■■□□ 2.28
CLN3-264ENST00000637985 PLB1Q6P1J6 1458 aa29.31■■■□□ 2.28
CLN3-264ENST00000637985 IGF1RP08069 1367 aa29.31■■■□□ 2.28
CLN3-264ENST00000637985 COL17A1Q9UMD9 1497 aaPredicted RBP29.29■■■□□ 2.28
CLN3-264ENST00000637985 TNIKQ9UKE5 1360 aa29.25■■■□□ 2.27
CLN3-264ENST00000637985 TTBK1Q5TCY1 1321 aaPredicted RBP29.23■■■□□ 2.27
CLN3-264ENST00000637985 CUL7Q14999 1698 aa29.23■■■□□ 2.27
CLN3-264ENST00000637985 UHRF1BP1LA0JNW5 1464 aa29.2■■■□□ 2.26
CLN3-264ENST00000637985 CARMIL2Q6F5E8 1435 aa29.2■■■□□ 2.26
CLN3-264ENST00000637985 KIF27Q86VH2 1401 aa29.17■■■□□ 2.26
CLN3-264ENST00000637985 MAP3K4Q9Y6R4 1608 aa29.15■■■□□ 2.26
CLN3-264ENST00000637985 EPRSP07814 1512 aaKnown RBP29.15■■■□□ 2.26
CLN3-264ENST00000637985 UACAQ9BZF9 1416 aa29.12■■■□□ 2.25
CLN3-264ENST00000637985 TEX14Q8IWB6 1497 aa29.11■■■□□ 2.25
CLN3-264ENST00000637985 CARMIL1Q5VZK9 1371 aa29.07■■■□□ 2.24
CLN3-264ENST00000637985 KDM5BQ9UGL1 1544 aa29.07■■■□□ 2.24
CLN3-264ENST00000637985 IQGAP2Q13576 1575 aa29.04■■■□□ 2.24
CLN3-264ENST00000637985 DISP1Q96F81 1524 aa29.01■■■□□ 2.23
CLN3-264ENST00000637985 FBXO41Q8TF61 875 aa29■■■□□ 2.23
CLN3-264ENST00000637985 ZCCHC11Q5TAX3 1644 aaKnown RBP28.97■■■□□ 2.23
CLN3-264ENST00000637985 WDR7Q9Y4E6 1490 aa28.88■■■□□ 2.21
CLN3-264ENST00000637985 UGGT2Q9NYU1 1516 aa28.86■■■□□ 2.21
CLN3-264ENST00000637985 MAGI3Q5TCQ9 1506 aa28.84■■■□□ 2.21
CLN3-264ENST00000637985 CD109Q6YHK3 1445 aa28.81■■■□□ 2.2
CLN3-264ENST00000637985 KIAA0556O60303 1618 aa28.8■■■□□ 2.2
CLN3-264ENST00000637985 CFAP43Q8NDM7 1665 aa28.77■■■□□ 2.2
CLN3-264ENST00000637985 KIF21BO75037 1637 aa28.76■■■□□ 2.2
CLN3-264ENST00000637985 KCNH8Q96L42 1107 aa28.71■■■□□ 2.19
CLN3-264ENST00000637985 RAPGEF2Q9Y4G8 1499 aa28.69■■■□□ 2.18
CLN3-264ENST00000637985 PTPRMP28827 1452 aa28.66■■■□□ 2.18
CLN3-264ENST00000637985 ARAP3Q8WWN8 1544 aa28.65■■■□□ 2.18
CLN3-264ENST00000637985 ADAMTSL3P82987 1691 aa28.63■■■□□ 2.17
CLN3-264ENST00000637985 ABCA8O94911 1581 aa28.61■■■□□ 2.17
CLN3-264ENST00000637985 GOLGA3Q08378 1498 aa28.53■■■□□ 2.16
CLN3-264ENST00000637985 PCF11O94913 1555 aaKnown RBP28.51■■■□□ 2.15
CLN3-264ENST00000637985 PHLDB1Q86UU1 1377 aa28.5■■■□□ 2.15
CLN3-264ENST00000637985 LMTK3Q96Q04 1460 aa28.49■■■□□ 2.15
CLN3-264ENST00000637985 CTTNBP2Q8WZ74 1663 aa28.46■■■□□ 2.15
CLN3-264ENST00000637985 BCORL1Q5H9F3 1711 aa28.45■■■□□ 2.14
CLN3-264ENST00000637985 RAPGEF3O95398 923 aa28.44■■■□□ 2.14
CLN3-264ENST00000637985 MADDQ8WXG6 1647 aa28.42■■■□□ 2.14
CLN3-264ENST00000637985 ABCA9Q8IUA7 1624 aa28.4■■■□□ 2.14
CLN3-264ENST00000637985 ATP10BO94823 1461 aa28.39■■■□□ 2.13
CLN3-264ENST00000637985 NEO1Q92859 1461 aa28.36■■■□□ 2.13
CLN3-264ENST00000637985 ARID4BQ4LE39 1312 aaPredicted RBP28.36■■■□□ 2.13
CLN3-264ENST00000637985 ARID3CA6NKF2 412 aa28.34■■■□□ 2.13
CLN3-264ENST00000637985 FRMPD1Q5SYB0 1578 aa28.33■■■□□ 2.12
CLN3-264ENST00000637985 HSPA2P54652 639 aa28.3■■■□□ 2.12
CLN3-264ENST00000637985 CERKQ8TCT0 537 aa28.29■■■□□ 2.12
CLN3-264ENST00000637985 RIMS1Q86UR5 1692 aaKnown RBP28.28■■■□□ 2.12
CLN3-264ENST00000637985 FAM9AQ8IZU1 332 aaPredicted RBP28.26■■■□□ 2.11
CLN3-264ENST00000637985 ARHGEF40Q8TER5 1519 aa28.22■■■□□ 2.11
CLN3-264ENST00000637985 PRXQ9BXM0 1461 aa28.2■■■□□ 2.1
CLN3-264ENST00000637985 ILDR2Q71H61 639 aa28.19■■■□□ 2.1
CLN3-264ENST00000637985 P3H3Q8IVL6 736 aa28.19■■■□□ 2.1
CLN3-264ENST00000637985 SOCS7O14512 581 aa28.17■■■□□ 2.1
CLN3-264ENST00000637985 DENND4BO75064 1496 aaPredicted RBP28.15■■■□□ 2.1
CLN3-264ENST00000637985 RICTORQ6R327 1708 aa28.14■■■□□ 2.1
CLN3-264ENST00000637985 DISP3Q9P2K9 1392 aa28.13■■■□□ 2.09
CLN3-264ENST00000637985 PLPPR3Q6T4P5 718 aa28.13■■■□□ 2.09
CLN3-264ENST00000637985 FHOD3Q2V2M9 1422 aa28.12■■■□□ 2.09
CLN3-264ENST00000637985 POGZQ7Z3K3 1410 aa28.12■■■□□ 2.09
CLN3-264ENST00000637985 RAPGEF6Q8TEU7 1601 aa28.1■■■□□ 2.09
CLN3-264ENST00000637985 FANCAO15360 1455 aa28.1■■■□□ 2.09
CLN3-264ENST00000637985 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.09■■■□□ 2.09
CLN3-264ENST00000637985 HNRNPUL2Q1KMD3 747 aaKnown RBP28.09■■■□□ 2.09
CLN3-264ENST00000637985 AKNAQ7Z591 1439 aa28.08■■■□□ 2.09
CLN3-264ENST00000637985 SIGLEC1Q9BZZ2 1709 aa28.06■■■□□ 2.08
CLN3-264ENST00000637985 SAMD9Q5K651 1589 aa28.05■■■□□ 2.08
CLN3-264ENST00000637985 ZMYM4Q5VZL5 1548 aa28.04■■■□□ 2.08
CLN3-264ENST00000637985 NUP153P49790 1475 aaKnown RBP28.03■■■□□ 2.08
CLN3-264ENST00000637985 YEATS2Q9ULM3 1422 aa28.01■■■□□ 2.08
CLN3-264ENST00000637985 ZFYVE16Q7Z3T8 1539 aa28.01■■■□□ 2.07
CLN3-264ENST00000637985 TTC37Q6PGP7 1564 aa28■■■□□ 2.07
CLN3-264ENST00000637985 EFCAB5A4FU69 1503 aa27.99■■■□□ 2.07
CLN3-264ENST00000637985 CFAP74Q9C0B2 1584 aa27.99■■■□□ 2.07
CLN3-264ENST00000637985 MAGI2Q86UL8 1455 aa27.98■■■□□ 2.07
CLN3-264ENST00000637985 FER1L4A9Z1Z3 1794 aa27.98■■■□□ 2.07
CLN3-264ENST00000637985 PLEKHD1A6NEE1 506 aa27.97■■■□□ 2.07
CLN3-264ENST00000637985 MLECQ14165 292 aa27.97■■■□□ 2.07
CLN3-264ENST00000637985 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP27.93■■■□□ 2.06
CLN3-264ENST00000637985 DMRT2Q9Y5R5 561 aa27.92■■■□□ 2.06
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms