RNA–Protein interactions for RNA: ENST00000627232.2

PNKP-220, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 1,530 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-220ENST00000627232 MAP3K1Q13233 1512 aa33.71■■■□□ 2.99
PNKP-220ENST00000627232 THOC2Q8NI27 1593 aaKnown RBP33.71■■■□□ 2.99
PNKP-220ENST00000627232 FHAD1B1AJZ9 1412 aa33.69■■■□□ 2.98
PNKP-220ENST00000627232 GRIN2BQ13224 1484 aa33.66■■■□□ 2.98
PNKP-220ENST00000627232 ADAMTS12P58397 1594 aa33.66■■■□□ 2.98
PNKP-220ENST00000627232 AQRO60306 1485 aaKnown RBP eCLIP33.64■■■□□ 2.982e-6■■■■□ 20.5
PNKP-220ENST00000627232 TIAM1Q13009 1591 aa33.58■■■□□ 2.97
PNKP-220ENST00000627232 SAMD9Q5K651 1589 aa33.58■■■□□ 2.97
PNKP-220ENST00000627232 KANK4Q5T7N3 995 aaPredicted RBP33.55■■■□□ 2.96
PNKP-220ENST00000627232 ZNF608Q9ULD9 1512 aaPredicted RBP33.54■■■□□ 2.96
PNKP-220ENST00000627232 PCF11O94913 1555 aaKnown RBP33.54■■■□□ 2.96
PNKP-220ENST00000627232 CFAP43Q8NDM7 1665 aa33.53■■■□□ 2.96
PNKP-220ENST00000627232 FHOD3Q2V2M9 1422 aa33.51■■■□□ 2.96
PNKP-220ENST00000627232 FYCO1Q9BQS8 1478 aa33.5■■■□□ 2.95
PNKP-220ENST00000627232 EIF4G3O43432 1585 aaKnown RBP33.5■■■□□ 2.95
PNKP-220ENST00000627232 FMN1Q68DA7 1419 aa33.47■■■□□ 2.95
PNKP-220ENST00000627232 CASKIN1Q8WXD9 1431 aa33.47■■■□□ 2.95
PNKP-220ENST00000627232 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP33.44■■■□□ 2.94
PNKP-220ENST00000627232 P3H3Q8IVL6 736 aa33.43■■■□□ 2.94
PNKP-220ENST00000627232 RRBP1Q9P2E9 1410 aaKnown RBP33.43■■■□□ 2.94
PNKP-220ENST00000627232 CCER1Q8TC90 406 aaPredicted RBP33.43■■■□□ 2.94
PNKP-220ENST00000627232 IQGAP2Q13576 1575 aa33.4■■■□□ 2.94
PNKP-220ENST00000627232 LRRC9Q6ZRR7 1453 aa33.4■■■□□ 2.94
PNKP-220ENST00000627232 SNAPC4Q5SXM2 1469 aa33.35■■■□□ 2.93
PNKP-220ENST00000627232 MAGI1Q96QZ7 1491 aaPredicted RBP33.33■■■□□ 2.93
PNKP-220ENST00000627232 HNRNPUL2Q1KMD3 747 aaKnown RBP33.32■■■□□ 2.92
PNKP-220ENST00000627232 UGGT2Q9NYU1 1516 aa33.27■■■□□ 2.92
PNKP-220ENST00000627232 GRIN2AQ12879 1464 aa33.26■■■□□ 2.91
PNKP-220ENST00000627232 CCNB3Q8WWL7 1395 aa33.24■■■□□ 2.91
PNKP-220ENST00000627232 KIAA0586Q9BVV6 1533 aa33.23■■■□□ 2.91
PNKP-220ENST00000627232 SYNJ2O15056 1496 aa33.19■■■□□ 2.9
PNKP-220ENST00000627232 LRRIQ1Q96JM4 1722 aa33.17■■■□□ 2.9
PNKP-220ENST00000627232 ATP1B4Q9UN42 357 aaPredicted RBP33.16■■■□□ 2.9
PNKP-220ENST00000627232 HECW1Q76N89 1606 aa33.09■■■□□ 2.89
PNKP-220ENST00000627232 PHLDB1Q86UU1 1377 aa33.09■■■□□ 2.89
PNKP-220ENST00000627232 CCDC18Q5T9S5 1454 aa33.07■■■□□ 2.88
PNKP-220ENST00000627232 KIAA0556O60303 1618 aa33.06■■■□□ 2.88
PNKP-220ENST00000627232 CEP170Q5SW79 1584 aa33.04■■■□□ 2.88
PNKP-220ENST00000627232 CHMP7Q8WUX9 453 aaPredicted RBP33.02■■■□□ 2.88
PNKP-220ENST00000627232 DISP1Q96F81 1524 aa33.01■■■□□ 2.87
PNKP-220ENST00000627232 EHBP1L1Q8N3D4 1523 aa33■■■□□ 2.87
PNKP-220ENST00000627232 NUP160Q12769 1436 aa33■■■□□ 2.87
PNKP-220ENST00000627232 MTUS2Q5JR59 1369 aa32.98■■■□□ 2.87
PNKP-220ENST00000627232 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP32.98■■■□□ 2.87
PNKP-220ENST00000627232 SUPT6HQ7KZ85 1726 aaKnown RBP32.95■■■□□ 2.87
PNKP-220ENST00000627232 EPRSP07814 1512 aaKnown RBP32.9■■■□□ 2.86
PNKP-220ENST00000627232 CLSPNQ9HAW4 1339 aa32.88■■■□□ 2.85
PNKP-220ENST00000627232 NCOA2Q15596 1464 aa32.86■■■□□ 2.85
PNKP-220ENST00000627232 FGD6Q6ZV73 1430 aa32.85■■■□□ 2.85
PNKP-220ENST00000627232 ARHGEF11O15085 1522 aa32.85■■■□□ 2.85
PNKP-220ENST00000627232 RAPGEF6Q8TEU7 1601 aa32.83■■■□□ 2.85
PNKP-220ENST00000627232 MAGI3Q5TCQ9 1506 aa32.83■■■□□ 2.85
PNKP-220ENST00000627232 FBLN2P98095 1184 aa32.82■■■□□ 2.84
PNKP-220ENST00000627232 DHX57Q6P158 1386 aaKnown RBP32.81■■■□□ 2.84
PNKP-220ENST00000627232 MYOM3Q5VTT5 1437 aa32.79■■■□□ 2.84
PNKP-220ENST00000627232 FAM50AQ14320 339 aaKnown RBP32.79■■■□□ 2.84
PNKP-220ENST00000627232 CARMIL2Q6F5E8 1435 aa32.79■■■□□ 2.84
PNKP-220ENST00000627232 ITGAEP38570 1179 aa32.77■■■□□ 2.84
PNKP-220ENST00000627232 CDK13Q14004 1512 aaKnown RBP32.76■■■□□ 2.83
PNKP-220ENST00000627232 SETD5Q9C0A6 1442 aa32.74■■■□□ 2.83
PNKP-220ENST00000627232 JPH4Q96JJ6 628 aa32.72■■■□□ 2.83
PNKP-220ENST00000627232 NUP153P49790 1475 aaKnown RBP32.72■■■□□ 2.83
PNKP-220ENST00000627232 RAB3GAP2Q9H2M9 1393 aa32.69■■■□□ 2.82
PNKP-220ENST00000627232 CHD1O14646 1710 aa32.69■■■□□ 2.82
PNKP-220ENST00000627232 PTPN23Q9H3S7 1636 aa32.66■■■□□ 2.82
PNKP-220ENST00000627232 TCOF1Q13428 1488 aaKnown RBP32.62■■■□□ 2.81
PNKP-220ENST00000627232 MIA2Q96PC5 1412 aa32.58■■■□□ 2.81
PNKP-220ENST00000627232 CDK11AQ9UQ88 783 aaPredicted RBP32.56■■■□□ 2.8
PNKP-220ENST00000627232 PLB1Q6P1J6 1458 aa32.55■■■□□ 2.8
PNKP-220ENST00000627232 ABCA8O94911 1581 aa32.55■■■□□ 2.8
PNKP-220ENST00000627232 SHROOM2Q13796 1616 aa32.52■■■□□ 2.8
PNKP-220ENST00000627232 ADCY10Q96PN6 1610 aa32.48■■■□□ 2.79
PNKP-220ENST00000627232 TROQ12816 1431 aaPredicted RBP32.47■■■□□ 2.79
PNKP-220ENST00000627232 PRG4Q92954 1404 aaPredicted RBP32.47■■■□□ 2.79
PNKP-220ENST00000627232 HFM1A2PYH4 1435 aa32.47■■■□□ 2.79
PNKP-220ENST00000627232 PTPRKQ15262 1439 aa32.47■■■□□ 2.79
PNKP-220ENST00000627232 ARID3CA6NKF2 412 aa32.46■■■□□ 2.79
PNKP-220ENST00000627232 MAPKBP1O60336 1514 aa32.44■■■□□ 2.78
PNKP-220ENST00000627232 ITSN2Q9NZM3 1697 aa32.38■■■□□ 2.77
PNKP-220ENST00000627232 AKNAQ7Z591 1439 aa32.37■■■□□ 2.77
PNKP-220ENST00000627232 ZNF316A6NFI3 1004 aaPredicted RBP32.36■■■□□ 2.77
PNKP-220ENST00000627232 GCC2Q8IWJ2 1684 aa32.36■■■□□ 2.77
PNKP-220ENST00000627232 PTPRGP23470 1445 aa32.35■■■□□ 2.77
PNKP-220ENST00000627232 NAIPQ13075 1403 aa32.35■■■□□ 2.77
PNKP-220ENST00000627232 ATP10BO94823 1461 aa32.32■■■□□ 2.76
PNKP-220ENST00000627232 CLASP1Q7Z460 1538 aa32.29■■■□□ 2.76
PNKP-220ENST00000627232 DNMT1P26358 1616 aaKnown RBP32.29■■■□□ 2.76
PNKP-220ENST00000627232 KIF14Q15058 1648 aa32.29■■■□□ 2.76
PNKP-220ENST00000627232 UACAQ9BZF9 1416 aa32.26■■■□□ 2.75
PNKP-220ENST00000627232 GPATCH8Q9UKJ3 1502 aaKnown RBP32.22■■■□□ 2.75
PNKP-220ENST00000627232 PLEKHD1A6NEE1 506 aa32.21■■■□□ 2.75
PNKP-220ENST00000627232 DAPK1P53355 1430 aa32.21■■■□□ 2.75
PNKP-220ENST00000627232 ROCK1Q13464 1354 aa32.19■■■□□ 2.74
PNKP-220ENST00000627232 ABCC10Q5T3U5 1492 aa32.17■■■□□ 2.74
PNKP-220ENST00000627232 DIEXFQ68CQ4 756 aaKnown RBP32.17■■■□□ 2.74
PNKP-220ENST00000627232 CAMSAP2Q08AD1 1489 aa32.15■■■□□ 2.74
PNKP-220ENST00000627232 CDC42BPAQ5VT25 1732 aa32.15■■■□□ 2.74
PNKP-220ENST00000627232 ABCC5O15440 1437 aa32.15■■■□□ 2.74
PNKP-220ENST00000627232 ERCC6L2Q5T890 1561 aa32.14■■■□□ 2.74
PNKP-220ENST00000627232 ACIN1Q9UKV3 1341 aaKnown RBP32.14■■■□□ 2.74
Retrieved 100 of 20,778 RNA–protein pairs in 141.6 ms