RNA–Protein interactions for RNA: ENST00000621856.1

SPAST-204, Transcript of spastin, humanhuman

TSL 1 (best) BASIC

Gene SPAST, Length 1,715 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPAST-204ENST00000621856 FHAD1B1AJZ9 1412 aa33.52■■■□□ 2.96
SPAST-204ENST00000621856 ARHGAP35Q9NRY4 1499 aa33.5■■■□□ 2.95
SPAST-204ENST00000621856 SNAPC4Q5SXM2 1469 aa33.4■■■□□ 2.94
SPAST-204ENST00000621856 APLP2Q06481 763 aa33.33■■■□□ 2.93
SPAST-204ENST00000621856 EFCAB5A4FU69 1503 aa33.31■■■□□ 2.92
SPAST-204ENST00000621856 MAGI1Q96QZ7 1491 aaPredicted RBP33.31■■■□□ 2.92
SPAST-204ENST00000621856 TTBK1Q5TCY1 1321 aaPredicted RBP33.29■■■□□ 2.92
SPAST-204ENST00000621856 P3H3Q8IVL6 736 aa33.22■■■□□ 2.91
SPAST-204ENST00000621856 GRIN2AQ12879 1464 aa33.21■■■□□ 2.91
SPAST-204ENST00000621856 SYNJ2O15056 1496 aa33.19■■■□□ 2.9
SPAST-204ENST00000621856 IQGAP2Q13576 1575 aa33.18■■■□□ 2.9
SPAST-204ENST00000621856 FHOD3Q2V2M9 1422 aa33.17■■■□□ 2.9
SPAST-204ENST00000621856 SAMD9Q5K651 1589 aa33.16■■■□□ 2.9
SPAST-204ENST00000621856 CHMP7Q8WUX9 453 aaPredicted RBP33.14■■■□□ 2.89
SPAST-204ENST00000621856 FBLN2P98095 1184 aa33.07■■■□□ 2.88
SPAST-204ENST00000621856 KIAA0586Q9BVV6 1533 aa33.06■■■□□ 2.88
SPAST-204ENST00000621856 PCF11O94913 1555 aaKnown RBP33.05■■■□□ 2.88
SPAST-204ENST00000621856 FMN1Q68DA7 1419 aa33.01■■■□□ 2.88
SPAST-204ENST00000621856 CEP170Q5SW79 1584 aa33■■■□□ 2.87
SPAST-204ENST00000621856 UGGT2Q9NYU1 1516 aa32.99■■■□□ 2.87
SPAST-204ENST00000621856 FYCO1Q9BQS8 1478 aa32.97■■■□□ 2.87
SPAST-204ENST00000621856 MAP3K1Q13233 1512 aa32.95■■■□□ 2.87
SPAST-204ENST00000621856 CASKIN1Q8WXD9 1431 aa32.95■■■□□ 2.86
SPAST-204ENST00000621856 TIAM1Q13009 1591 aa32.94■■■□□ 2.86
SPAST-204ENST00000621856 KANK4Q5T7N3 995 aaPredicted RBP32.93■■■□□ 2.86
SPAST-204ENST00000621856 NUP160Q12769 1436 aa32.93■■■□□ 2.86
SPAST-204ENST00000621856 ATP1B4Q9UN42 357 aaPredicted RBP32.92■■■□□ 2.86
SPAST-204ENST00000621856 CFAP43Q8NDM7 1665 aa32.9■■■□□ 2.86
SPAST-204ENST00000621856 CHD1O14646 1710 aa32.85■■■□□ 2.85
SPAST-204ENST00000621856 KIAA0556O60303 1618 aa32.84■■■□□ 2.85
SPAST-204ENST00000621856 DISP1Q96F81 1524 aa32.81■■■□□ 2.84
SPAST-204ENST00000621856 LRRC9Q6ZRR7 1453 aa32.78■■■□□ 2.84
SPAST-204ENST00000621856 LRRIQ1Q96JM4 1722 aa32.71■■■□□ 2.83
SPAST-204ENST00000621856 HRCP23327 699 aa32.71■■■□□ 2.83
SPAST-204ENST00000621856 JPH4Q96JJ6 628 aa32.71■■■□□ 2.83
SPAST-204ENST00000621856 HECW1Q76N89 1606 aa32.7■■■□□ 2.82
SPAST-204ENST00000621856 CARMIL2Q6F5E8 1435 aa32.68■■■□□ 2.82
SPAST-204ENST00000621856 CCDC18Q5T9S5 1454 aa32.62■■■□□ 2.81
SPAST-204ENST00000621856 RRBP1Q9P2E9 1410 aaKnown RBP32.58■■■□□ 2.81
SPAST-204ENST00000621856 MTUS2Q5JR59 1369 aa32.56■■■□□ 2.8
SPAST-204ENST00000621856 RAPGEF6Q8TEU7 1601 aa32.55■■■□□ 2.8
SPAST-204ENST00000621856 EPRSP07814 1512 aaKnown RBP32.53■■■□□ 2.8
SPAST-204ENST00000621856 HNRNPUL2Q1KMD3 747 aaKnown RBP32.53■■■□□ 2.8
SPAST-204ENST00000621856 PRG4Q92954 1404 aaPredicted RBP32.5■■■□□ 2.79
SPAST-204ENST00000621856 CCNB3Q8WWL7 1395 aa32.49■■■□□ 2.79
SPAST-204ENST00000621856 EHBP1L1Q8N3D4 1523 aa32.49■■■□□ 2.79
SPAST-204ENST00000621856 PHLDB1Q86UU1 1377 aa32.48■■■□□ 2.79
SPAST-204ENST00000621856 SHROOM2Q13796 1616 aa32.48■■■□□ 2.79
SPAST-204ENST00000621856 CDK13Q14004 1512 aaKnown RBP32.47■■■□□ 2.79
SPAST-204ENST00000621856 NUP153P49790 1475 aaKnown RBP32.43■■■□□ 2.78
SPAST-204ENST00000621856 SUPT6HQ7KZ85 1726 aaKnown RBP32.43■■■□□ 2.78
SPAST-204ENST00000621856 ARID3CA6NKF2 412 aa32.42■■■□□ 2.78
SPAST-204ENST00000621856 CLASP1Q7Z460 1538 aa32.41■■■□□ 2.78
SPAST-204ENST00000621856 PLB1Q6P1J6 1458 aa32.41■■■□□ 2.78
SPAST-204ENST00000621856 MAGI3Q5TCQ9 1506 aa32.41■■■□□ 2.78
SPAST-204ENST00000621856 NCOA2Q15596 1464 aa32.35■■■□□ 2.77
SPAST-204ENST00000621856 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP32.35■■■□□ 2.77
SPAST-204ENST00000621856 ABCA8O94911 1581 aa32.33■■■□□ 2.77
SPAST-204ENST00000621856 PTPRGP23470 1445 aa32.33■■■□□ 2.77
SPAST-204ENST00000621856 ZEB1P37275 1124 aaPredicted RBP32.29■■■□□ 2.76
SPAST-204ENST00000621856 CCER1Q8TC90 406 aaPredicted RBP32.29■■■□□ 2.76
SPAST-204ENST00000621856 FAM50AQ14320 339 aaKnown RBP32.27■■■□□ 2.76
SPAST-204ENST00000621856 ARHGEF11O15085 1522 aa32.26■■■□□ 2.75
SPAST-204ENST00000621856 ERCC6L2Q5T890 1561 aa32.26■■■□□ 2.75
SPAST-204ENST00000621856 CDK11AQ9UQ88 783 aaPredicted RBP32.26■■■□□ 2.75
SPAST-204ENST00000621856 FGD6Q6ZV73 1430 aa32.25■■■□□ 2.75
SPAST-204ENST00000621856 ITGAEP38570 1179 aa32.23■■■□□ 2.75
SPAST-204ENST00000621856 MYOM3Q5VTT5 1437 aa32.23■■■□□ 2.75
SPAST-204ENST00000621856 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP32.19■■■□□ 2.74
SPAST-204ENST00000621856 TROQ12816 1431 aaPredicted RBP32.15■■■□□ 2.74
SPAST-204ENST00000621856 UACAQ9BZF9 1416 aa32.13■■■□□ 2.73
SPAST-204ENST00000621856 ATP10BO94823 1461 aa32.13■■■□□ 2.73
SPAST-204ENST00000621856 PTPN23Q9H3S7 1636 aa32.11■■■□□ 2.73
SPAST-204ENST00000621856 ADCY10Q96PN6 1610 aa32.06■■■□□ 2.72
SPAST-204ENST00000621856 OSCARQ8IYS5 282 aa32.05■■■□□ 2.72
SPAST-204ENST00000621856 PLEKHD1A6NEE1 506 aa32.04■■■□□ 2.72
SPAST-204ENST00000621856 ABCC2Q92887 1545 aa32.04■■■□□ 2.72
SPAST-204ENST00000621856 MIA2Q96PC5 1412 aa32.03■■■□□ 2.72
SPAST-204ENST00000621856 TCOF1Q13428 1488 aaKnown RBP32.01■■■□□ 2.71
SPAST-204ENST00000621856 KIF14Q15058 1648 aa32.01■■■□□ 2.71
SPAST-204ENST00000621856 ITSN2Q9NZM3 1697 aa31.95■■■□□ 2.71
SPAST-204ENST00000621856 SETD5Q9C0A6 1442 aa31.93■■■□□ 2.7
SPAST-204ENST00000621856 UHRF1BP1LA0JNW5 1464 aa31.92■■■□□ 2.7
SPAST-204ENST00000621856 RAB3GAP2Q9H2M9 1393 aa31.9■■■□□ 2.7
SPAST-204ENST00000621856 PTPRKQ15262 1439 aa31.86■■■□□ 2.69
SPAST-204ENST00000621856 GPATCH8Q9UKJ3 1502 aaKnown RBP31.86■■■□□ 2.69
SPAST-204ENST00000621856 ZCCHC11Q5TAX3 1644 aaKnown RBP31.84■■■□□ 2.69
SPAST-204ENST00000621856 ABCC10Q5T3U5 1492 aa31.84■■■□□ 2.69
SPAST-204ENST00000621856 DHX57Q6P158 1386 aaKnown RBP31.83■■■□□ 2.69
SPAST-204ENST00000621856 CFDP1Q9UEE9 299 aaPredicted RBP31.81■■■□□ 2.68
SPAST-204ENST00000621856 CDC42BPAQ5VT25 1732 aa31.81■■■□□ 2.68
SPAST-204ENST00000621856 KDM5BQ9UGL1 1544 aa31.8■■■□□ 2.68
SPAST-204ENST00000621856 CAMSAP2Q08AD1 1489 aa31.76■■■□□ 2.67
SPAST-204ENST00000621856 ZNF644Q9H582 1327 aaPredicted RBP31.76■■■□□ 2.67
SPAST-204ENST00000621856 HFM1A2PYH4 1435 aa31.75■■■□□ 2.67
SPAST-204ENST00000621856 DNMT1P26358 1616 aaKnown RBP31.75■■■□□ 2.67
SPAST-204ENST00000621856 DAPK1P53355 1430 aa31.72■■■□□ 2.67
SPAST-204ENST00000621856 ZNF777Q9ULD5 760 aaPredicted RBP31.72■■■□□ 2.67
SPAST-204ENST00000621856 CLSPNQ9HAW4 1339 aa31.71■■■□□ 2.67
SPAST-204ENST00000621856 CHIC2Q9UKJ5 165 aa31.7■■■□□ 2.67
Retrieved 100 of 20,778 RNA–protein pairs in 75 ms