RNA–Protein interactions for RNA: ENST00000616053.4

TCF4-248, Transcript of transcription factor 4, humanhuman

TSL 5 BASIC

Gene TCF4, Length 8,140 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCF4-248ENST00000616053 NAP1L2Q9ULW6 460 aaPredicted RBP16.71■□□□□ 0.27
TCF4-248ENST00000616053 PABPN1Q86U42 306 aaKnown RBP eCLIP16.7■□□□□ 0.26
TCF4-248ENST00000616053 FGD1P98174 961 aa16.7■□□□□ 0.26
TCF4-248ENST00000616053 ANP32EQ9BTT0 268 aa16.68■□□□□ 0.26
TCF4-248ENST00000616053 CNKSR2Q8WXI2 1034 aa16.68■□□□□ 0.26
TCF4-248ENST00000616053 PTMAP06454 111 aaKnown RBP16.66■□□□□ 0.26
TCF4-248ENST00000616053 AEBP2Q6ZN18 517 aaPredicted RBP16.65■□□□□ 0.26
TCF4-248ENST00000616053 CASC1Q6TDU7 716 aa16.64■□□□□ 0.25
TCF4-248ENST00000616053 TNNT2P45379 298 aaPredicted RBP16.64■□□□□ 0.25
TCF4-248ENST00000616053 G3V3G9 751 aa16.63■□□□□ 0.25
TCF4-248ENST00000616053 DCAF8Q5TAQ9 597 aa16.63■□□□□ 0.25
TCF4-248ENST00000616053 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.63■□□□□ 0.25
TCF4-248ENST00000616053 PPM1GO15355 546 aaPredicted RBP16.63■□□□□ 0.25
TCF4-248ENST00000616053 GOLGA6L6A8MZA4 724 aa16.62■□□□□ 0.25
TCF4-248ENST00000616053 CCDC9Q9Y3X0 531 aaKnown RBP16.62■□□□□ 0.25
TCF4-248ENST00000616053 OS9Q13438 667 aaPredicted RBP16.62■□□□□ 0.25
TCF4-248ENST00000616053 DNTTIP2Q5QJE6 756 aaKnown RBP16.62■□□□□ 0.25
TCF4-248ENST00000616053 GOLGA6L22H0YM25 854 aa16.6■□□□□ 0.25
TCF4-248ENST00000616053 PDE4CQ08493 712 aa16.59■□□□□ 0.25
TCF4-248ENST00000616053 TMC1Q8TDI8 760 aa16.59■□□□□ 0.25
TCF4-248ENST00000616053 KIAA2012Q0VF49 1180 aa16.58■□□□□ 0.25
TCF4-248ENST00000616053 PNNQ9H307 717 aaKnown RBP16.58■□□□□ 0.25
TCF4-248ENST00000616053 FBXO3Q9UK99 471 aa16.58■□□□□ 0.25
TCF4-248ENST00000616053 NOC3LQ8WTT2 800 aaKnown RBP16.58■□□□□ 0.24
TCF4-248ENST00000616053 L1TD1Q5T7N2 865 aaKnown RBP16.56■□□□□ 0.24
TCF4-248ENST00000616053 KCNJ4P48050 445 aa16.56■□□□□ 0.24
TCF4-248ENST00000616053 NRDCO43847 1150 aa16.54■□□□□ 0.24
TCF4-248ENST00000616053 PLCB2Q00722 1185 aa16.53■□□□□ 0.24
TCF4-248ENST00000616053 CHAF1AQ13111 956 aaPredicted RBP16.53■□□□□ 0.24
TCF4-248ENST00000616053 PHF23Q9BUL5 403 aaPredicted RBP16.52■□□□□ 0.24
TCF4-248ENST00000616053 KDM2AQ9Y2K7 1162 aa16.52■□□□□ 0.24
TCF4-248ENST00000616053 FAM9BQ8IZU0 186 aa16.52■□□□□ 0.24
TCF4-248ENST00000616053 LAS1LQ9Y4W2 734 aaKnown RBP16.49■□□□□ 0.23
TCF4-248ENST00000616053 GNL2Q13823 731 aaKnown RBP16.47■□□□□ 0.23
TCF4-248ENST00000616053 AMER1Q5JTC6 1135 aaPredicted RBP16.47■□□□□ 0.23
TCF4-248ENST00000616053 LOC105371045A0A1W2PR82 267 aa16.47■□□□□ 0.23
TCF4-248ENST00000616053 ANO8Q9HCE9 1232 aaPredicted RBP16.46■□□□□ 0.22
TCF4-248ENST00000616053 TSPY4P0CV99 314 aa16.45■□□□□ 0.22
TCF4-248ENST00000616053 TSPY10P0CW01 314 aa16.45■□□□□ 0.22
TCF4-248ENST00000616053 ZNF330Q9Y3S2 320 aaPredicted RBP16.44■□□□□ 0.22
TCF4-248ENST00000616053 NBR1Q14596 966 aa16.44■□□□□ 0.22
TCF4-248ENST00000616053 CCDC136Q96JN2 1154 aa16.43■□□□□ 0.22
TCF4-248ENST00000616053 BECN1Q14457 450 aa16.43■□□□□ 0.22
TCF4-248ENST00000616053 CFAP53Q96M91 514 aa16.42■□□□□ 0.22
TCF4-248ENST00000616053 CWC22Q9HCG8 908 aaKnown RBP16.42■□□□□ 0.22
TCF4-248ENST00000616053 A0A0U1RQG5 324 aaPredicted RBP16.42■□□□□ 0.22
TCF4-248ENST00000616053 KCNH8Q96L42 1107 aa16.41■□□□□ 0.22
TCF4-248ENST00000616053 WWC1Q8IX03 1113 aa16.41■□□□□ 0.22
TCF4-248ENST00000616053 GOLGA6L4A6NEF3 574 aa16.4■□□□□ 0.22
TCF4-248ENST00000616053 VPS53Q5VIR6 699 aa16.4■□□□□ 0.22
TCF4-248ENST00000616053 CEP89Q96ST8 783 aa16.39■□□□□ 0.21
TCF4-248ENST00000616053 TONSLQ96HA7 1378 aa16.39■□□□□ 0.21
TCF4-248ENST00000616053 HNRNPUQ00839 825 aaKnown RBP eCLIP16.38■□□□□ 0.21
TCF4-248ENST00000616053 FTSJ3Q8IY81 847 aaKnown RBP16.38■□□□□ 0.21
TCF4-248ENST00000616053 KLHL34Q8N239 644 aa16.38■□□□□ 0.21
TCF4-248ENST00000616053 POGKQ9P215 609 aa16.37■□□□□ 0.21
TCF4-248ENST00000616053 MSH5O43196 834 aa16.36■□□□□ 0.21
TCF4-248ENST00000616053 CSB-PGBD3P0DP91 1061 aa16.34■□□□□ 0.21
TCF4-248ENST00000616053 CHMP7Q8WUX9 453 aaPredicted RBP16.33■□□□□ 0.2
TCF4-248ENST00000616053 SOX12O15370 315 aa16.33■□□□□ 0.2
TCF4-248ENST00000616053 MAPK8IP3Q9UPT6 1336 aa16.32■□□□□ 0.2
TCF4-248ENST00000616053 ERICH6BQ5W0A0 696 aa16.32■□□□□ 0.2
TCF4-248ENST00000616053 CHIC2Q9UKJ5 165 aa16.3■□□□□ 0.2
TCF4-248ENST00000616053 CTDP1Q9Y5B0 961 aaPredicted RBP16.29■□□□□ 0.2
TCF4-248ENST00000616053 TCEAL9Q9UHQ7 104 aa16.28■□□□□ 0.2
TCF4-248ENST00000616053 MLECQ14165 292 aa16.27■□□□□ 0.19
TCF4-248ENST00000616053 GTF2E1P29083 439 aaPredicted RBP16.26■□□□□ 0.19
TCF4-248ENST00000616053 DRC7Q8IY82 874 aa16.26■□□□□ 0.19
TCF4-248ENST00000616053 MARCH6O60337 910 aa16.26■□□□□ 0.19
TCF4-248ENST00000616053 MEX3CQ5U5Q3 659 aaKnown RBP16.25■□□□□ 0.19
TCF4-248ENST00000616053 GTF3C3Q9Y5Q9 886 aa16.25■□□□□ 0.19
TCF4-248ENST00000616053 RASSF8Q8NHQ8 419 aa16.25■□□□□ 0.19
TCF4-248ENST00000616053 FRAT2O75474 233 aaPredicted RBP16.24■□□□□ 0.19
TCF4-248ENST00000616053 NUDCQ9Y266 331 aa16.23■□□□□ 0.19
TCF4-248ENST00000616053 HDGFP51858 240 aaKnown RBP16.23■□□□□ 0.19
TCF4-248ENST00000616053 TAF7LQ5H9L4 462 aa16.22■□□□□ 0.19
TCF4-248ENST00000616053 GORABQ5T7V8 394 aa16.21■□□□□ 0.19
TCF4-248ENST00000616053 PAK3O75914 559 aaPredicted RBP16.21■□□□□ 0.19
TCF4-248ENST00000616053 NEUROD2Q15784 382 aa16.21■□□□□ 0.19
TCF4-248ENST00000616053 TRIM34Q9BYJ4 488 aa16.18■□□□□ 0.18
TCF4-248ENST00000616053 DDRGK1Q96HY6 314 aa16.17■□□□□ 0.18
TCF4-248ENST00000616053 CHMP4BQ9H444 224 aaKnown RBP16.17■□□□□ 0.18
TCF4-248ENST00000616053 CHMP3Q9Y3E7 222 aa16.16■□□□□ 0.18
TCF4-248ENST00000616053 RGL3Q3MIN7 710 aa16.16■□□□□ 0.18
TCF4-248ENST00000616053 MRS2Q9HD23 443 aa16.16■□□□□ 0.18
TCF4-248ENST00000616053 CREBRFQ8IUR6 639 aa16.15■□□□□ 0.18
TCF4-248ENST00000616053 HSP90AB1P08238 724 aaKnown RBP16.15■□□□□ 0.18
TCF4-248ENST00000616053 ABCC9O60706 1549 aa16.15■□□□□ 0.18
TCF4-248ENST00000616053 UTP3Q9NQZ2 479 aaKnown RBP eCLIP16.15■□□□□ 0.182e-6■■■■■ 130.4
TCF4-248ENST00000616053 PAF1Q8N7H5 531 aa16.15■□□□□ 0.18
TCF4-248ENST00000616053 RTF1Q92541 710 aaKnown RBP16.15■□□□□ 0.18
TCF4-248ENST00000616053 MCCP23508 829 aa16.14■□□□□ 0.17
TCF4-248ENST00000616053 U2SURPO15042 1029 aaKnown RBP16.13■□□□□ 0.17
TCF4-248ENST00000616053 KNSTRNQ9Y448 316 aa16.13■□□□□ 0.17
TCF4-248ENST00000616053 RAD21O60216 631 aa16.13■□□□□ 0.17
TCF4-248ENST00000616053 CDCA8Q53HL2 280 aa16.13■□□□□ 0.17
TCF4-248ENST00000616053 CCDC34Q96HJ3 373 aa16.13■□□□□ 0.17
TCF4-248ENST00000616053 VSIG10Q8N0Z9 540 aa16.12■□□□□ 0.17
TCF4-248ENST00000616053 PPP4R2Q9NY27 417 aa16.11■□□□□ 0.17
TCF4-248ENST00000616053 FOXD1Q16676 465 aa16.09■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 282 ms