RNA–Protein interactions for RNA: ENST00000609684.2

PCDHB16-201, Transcript of protocadherin beta 16, humanhuman

APPRIS P1 BASIC

Gene PCDHB16, Length 5,001 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB16-201ENST00000609684 MRS2Q9HD23 443 aa19.31■□□□□ 0.68
PCDHB16-201ENST00000609684 STAG3Q9UJ98 1225 aa19.31■□□□□ 0.68
PCDHB16-201ENST00000609684 SCAF1Q9H7N4 1312 aaKnown RBP19.28■□□□□ 0.68
PCDHB16-201ENST00000609684 EIF4G2P78344 907 aaKnown RBP eCLIP19.27■□□□□ 0.67
PCDHB16-201ENST00000609684 SOGA1O94964 1423 aa19.21■□□□□ 0.67
PCDHB16-201ENST00000609684 PLEKHD1A6NEE1 506 aa19.2■□□□□ 0.66
PCDHB16-201ENST00000609684 CCDC136Q96JN2 1154 aa19.19■□□□□ 0.66
PCDHB16-201ENST00000609684 KCNH8Q96L42 1107 aa19.17■□□□□ 0.66
PCDHB16-201ENST00000609684 WDR43Q15061 677 aaKnown RBP eCLIP19.16■□□□□ 0.66
PCDHB16-201ENST00000609684 PLPPR3Q6T4P5 718 aa19.16■□□□□ 0.66
PCDHB16-201ENST00000609684 IRX6P78412 446 aaPredicted RBP19.15■□□□□ 0.66
PCDHB16-201ENST00000609684 MROH2BQ7Z745 1585 aa19.15■□□□□ 0.66
PCDHB16-201ENST00000609684 CFDP1Q9UEE9 299 aaPredicted RBP19.13■□□□□ 0.65
PCDHB16-201ENST00000609684 SIN3AQ96ST3 1273 aa19.1■□□□□ 0.65
PCDHB16-201ENST00000609684 RGL3Q3MIN7 710 aa19.09■□□□□ 0.65
PCDHB16-201ENST00000609684 GOLGA6L2Q8N9W4 650 aaPredicted RBP19.08■□□□□ 0.64
PCDHB16-201ENST00000609684 CCDC88BA6NC98 1476 aa19.07■□□□□ 0.64
PCDHB16-201ENST00000609684 CCNB3Q8WWL7 1395 aa19.06■□□□□ 0.64
PCDHB16-201ENST00000609684 CUX2O14529 1486 aa19.06■□□□□ 0.64
PCDHB16-201ENST00000609684 CARMIL1Q5VZK9 1371 aa19.05■□□□□ 0.64
PCDHB16-201ENST00000609684 ABCC8Q09428 1581 aa19.05■□□□□ 0.64
PCDHB16-201ENST00000609684 UPF2Q9HAU5 1272 aaKnown RBP19.04■□□□□ 0.64
PCDHB16-201ENST00000609684 FHAD1B1AJZ9 1412 aa19.02■□□□□ 0.64
PCDHB16-201ENST00000609684 SENP3Q9H4L4 574 aaPredicted RBP19■□□□□ 0.63
PCDHB16-201ENST00000609684 HSP90AA1P07900 732 aaKnown RBP18.99■□□□□ 0.63
PCDHB16-201ENST00000609684 VPS8Q8N3P4 1428 aa18.98■□□□□ 0.63
PCDHB16-201ENST00000609684 SENP3-EIF4A1A0A087X0R7 540 aa18.97■□□□□ 0.63
PCDHB16-201ENST00000609684 CARD11Q9BXL7 1154 aa18.97■□□□□ 0.63
PCDHB16-201ENST00000609684 ERCC6Q03468 1493 aa18.92■□□□□ 0.62
PCDHB16-201ENST00000609684 KANK4Q5T7N3 995 aaPredicted RBP18.91■□□□□ 0.62
PCDHB16-201ENST00000609684 EIF4G1Q04637 1599 aaKnown RBP18.9■□□□□ 0.62
PCDHB16-201ENST00000609684 NBR1Q14596 966 aa18.9■□□□□ 0.62
PCDHB16-201ENST00000609684 SUPT16HQ9Y5B9 1047 aaKnown RBP18.89■□□□□ 0.61
PCDHB16-201ENST00000609684 KNSTRNQ9Y448 316 aa18.87■□□□□ 0.61
PCDHB16-201ENST00000609684 PPP1R15AO75807 674 aaPredicted RBP18.87■□□□□ 0.61
PCDHB16-201ENST00000609684 SMARCA2P51531 1590 aa18.87■□□□□ 0.61
PCDHB16-201ENST00000609684 WIZO95785 1651 aa18.87■□□□□ 0.61
PCDHB16-201ENST00000609684 CDCA8Q53HL2 280 aa18.86■□□□□ 0.61
PCDHB16-201ENST00000609684 SETD5Q9C0A6 1442 aa18.83■□□□□ 0.61
PCDHB16-201ENST00000609684 TOP2AP11388 1531 aaKnown RBP18.83■□□□□ 0.6
PCDHB16-201ENST00000609684 TIMELESSQ9UNS1 1208 aa18.82■□□□□ 0.6
PCDHB16-201ENST00000609684 ANP32BQ92688 251 aaKnown RBP18.81■□□□□ 0.6
PCDHB16-201ENST00000609684 ARHGAP35Q9NRY4 1499 aa18.81■□□□□ 0.6
PCDHB16-201ENST00000609684 CFAP53Q96M91 514 aa18.78■□□□□ 0.6
PCDHB16-201ENST00000609684 MYH16Q9H6N6 1097 aa18.76■□□□□ 0.59
PCDHB16-201ENST00000609684 DCAF11Q8TEB1 546 aa18.76■□□□□ 0.59
PCDHB16-201ENST00000609684 TDRD9Q8NDG6 1382 aaKnown RBP18.75■□□□□ 0.59
PCDHB16-201ENST00000609684 RAB3GAP2Q9H2M9 1393 aa18.73■□□□□ 0.59
PCDHB16-201ENST00000609684 CC2D1BQ5T0F9 858 aaKnown RBP18.72■□□□□ 0.59
PCDHB16-201ENST00000609684 NEUROD2Q15784 382 aa18.72■□□□□ 0.59
PCDHB16-201ENST00000609684 PLEKHG5O94827 1062 aa18.71■□□□□ 0.59
PCDHB16-201ENST00000609684 C14orf37Q86TY3 774 aa18.71■□□□□ 0.59
PCDHB16-201ENST00000609684 PPM1GO15355 546 aaPredicted RBP18.71■□□□□ 0.59
PCDHB16-201ENST00000609684 ARXQ96QS3 562 aa18.7■□□□□ 0.58
PCDHB16-201ENST00000609684 FOXD1Q16676 465 aa18.7■□□□□ 0.58
PCDHB16-201ENST00000609684 ZBTB7CA1YPR0 619 aa18.69■□□□□ 0.58
PCDHB16-201ENST00000609684 HSPA5P11021 654 aaKnown RBP18.69■□□□□ 0.58
PCDHB16-201ENST00000609684 PPP4R2Q9NY27 417 aa18.69■□□□□ 0.58
PCDHB16-201ENST00000609684 FMN1Q68DA7 1419 aa18.68■□□□□ 0.58
PCDHB16-201ENST00000609684 PDS5BQ9NTI5 1447 aa18.68■□□□□ 0.58
PCDHB16-201ENST00000609684 ARID4BQ4LE39 1312 aaPredicted RBP18.68■□□□□ 0.58
PCDHB16-201ENST00000609684 PKD2Q13563 968 aa18.66■□□□□ 0.58
PCDHB16-201ENST00000609684 CCER2I3L3R5 266 aa18.66■□□□□ 0.58
PCDHB16-201ENST00000609684 EIF5BO60841 1220 aaKnown RBP18.66■□□□□ 0.58
PCDHB16-201ENST00000609684 TNNT2P45379 298 aaPredicted RBP18.66■□□□□ 0.58
PCDHB16-201ENST00000609684 RAPGEF2Q9Y4G8 1499 aa18.65■□□□□ 0.58
PCDHB16-201ENST00000609684 TMF1P82094 1093 aa18.65■□□□□ 0.58
PCDHB16-201ENST00000609684 DDRGK1Q96HY6 314 aa18.65■□□□□ 0.58
PCDHB16-201ENST00000609684 POGKQ9P215 609 aa18.64■□□□□ 0.58
PCDHB16-201ENST00000609684 CADPSQ9ULU8 1353 aa18.63■□□□□ 0.57
PCDHB16-201ENST00000609684 ATAD2BQ9ULI0 1458 aa18.62■□□□□ 0.57
PCDHB16-201ENST00000609684 MAPK8IP3Q9UPT6 1336 aa18.62■□□□□ 0.57
PCDHB16-201ENST00000609684 BECN1Q14457 450 aa18.61■□□□□ 0.57
PCDHB16-201ENST00000609684 FTSJ3Q8IY81 847 aaKnown RBP18.61■□□□□ 0.57
PCDHB16-201ENST00000609684 MPHOSPH9Q99550 1183 aa18.61■□□□□ 0.57
PCDHB16-201ENST00000609684 FHOD3Q2V2M9 1422 aa18.61■□□□□ 0.57
PCDHB16-201ENST00000609684 CARMIL2Q6F5E8 1435 aa18.61■□□□□ 0.57
PCDHB16-201ENST00000609684 NUDCQ9Y266 331 aa18.6■□□□□ 0.57
PCDHB16-201ENST00000609684 B4GALNT3Q6L9W6 998 aa18.6■□□□□ 0.57
PCDHB16-201ENST00000609684 RUSC2Q8N2Y8 1516 aa18.59■□□□□ 0.57
PCDHB16-201ENST00000609684 KANK1Q14678 1352 aa18.59■□□□□ 0.57
PCDHB16-201ENST00000609684 SMARCA4P51532 1647 aa18.59■□□□□ 0.57
PCDHB16-201ENST00000609684 FRAT1Q92837 279 aaPredicted RBP18.57■□□□□ 0.56
PCDHB16-201ENST00000609684 LAS1LQ9Y4W2 734 aaKnown RBP18.57■□□□□ 0.56
PCDHB16-201ENST00000609684 RGS3P49796 1198 aa18.56■□□□□ 0.56
PCDHB16-201ENST00000609684 U2SURPO15042 1029 aaKnown RBP18.54■□□□□ 0.56
PCDHB16-201ENST00000609684 NUP155O75694 1391 aa18.54■□□□□ 0.56
PCDHB16-201ENST00000609684 A0A0G2JS52 829 aa18.54■□□□□ 0.56
PCDHB16-201ENST00000609684 ANP32EQ9BTT0 268 aa18.52■□□□□ 0.56
PCDHB16-201ENST00000609684 ANKRD30AQ9BXX3 1397 aa18.51■□□□□ 0.55
PCDHB16-201ENST00000609684 GGT6Q6P531 493 aa18.49■□□□□ 0.55
PCDHB16-201ENST00000609684 L3MBTL2Q969R5 705 aa18.48■□□□□ 0.55
PCDHB16-201ENST00000609684 SAFB2Q14151 953 aaKnown RBP eCLIP18.47■□□□□ 0.55
PCDHB16-201ENST00000609684 KTN1Q86UP2 1357 aaKnown RBP18.46■□□□□ 0.55
PCDHB16-201ENST00000609684 SRPK2P78362 688 aaKnown RBP18.46■□□□□ 0.55
PCDHB16-201ENST00000609684 ROCK2O75116 1388 aaKnown RBP18.46■□□□□ 0.55
PCDHB16-201ENST00000609684 EFCAB2Q5VUJ9 269 aa18.46■□□□□ 0.55
PCDHB16-201ENST00000609684 MORC1Q86VD1 984 aa18.46■□□□□ 0.55
PCDHB16-201ENST00000609684 MLECQ14165 292 aa18.45■□□□□ 0.54
PCDHB16-201ENST00000609684 DHX57Q6P158 1386 aaKnown RBP18.44■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms