RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 NPM1P06748 294 aaKnown RBP eCLIP11.16□□□□□ -0.62
CUX1-220ENST00000607092 JPH4Q96JJ6 628 aa11.14□□□□□ -0.63
CUX1-220ENST00000607092 PRG4Q92954 1404 aaPredicted RBP11.14□□□□□ -0.63
CUX1-220ENST00000607092 ERCC6L2Q5T890 1561 aa11.13□□□□□ -0.63
CUX1-220ENST00000607092 MAPKBP1O60336 1514 aa11.07□□□□□ -0.64
CUX1-220ENST00000607092 ABCC10Q5T3U5 1492 aa11.06□□□□□ -0.64
CUX1-220ENST00000607092 RUSC2Q8N2Y8 1516 aa11.06□□□□□ -0.64
CUX1-220ENST00000607092 KIAA0586Q9BVV6 1533 aa11.06□□□□□ -0.64
CUX1-220ENST00000607092 FAM69CQ0P6D2 419 aa11.06□□□□□ -0.64
CUX1-220ENST00000607092 KIF27Q86VH2 1401 aa11.06□□□□□ -0.64
CUX1-220ENST00000607092 KIF13AQ9H1H9 1805 aa11.03□□□□□ -0.64
CUX1-220ENST00000607092 CUL7Q14999 1698 aa11.03□□□□□ -0.64
CUX1-220ENST00000607092 CARMIL2Q6F5E8 1435 aa11.01□□□□□ -0.65
CUX1-220ENST00000607092 IGF1RP08069 1367 aa11□□□□□ -0.65
CUX1-220ENST00000607092 DIP2BQ9P265 1576 aa10.99□□□□□ -0.65
CUX1-220ENST00000607092 PTPRGP23470 1445 aa10.99□□□□□ -0.65
CUX1-220ENST00000607092 ADCY10Q96PN6 1610 aa10.98□□□□□ -0.65
CUX1-220ENST00000607092 KDM6BO15054 1643 aa10.96□□□□□ -0.65
CUX1-220ENST00000607092 TNIKQ9UKE5 1360 aa10.96□□□□□ -0.65
CUX1-220ENST00000607092 PLB1Q6P1J6 1458 aa10.95□□□□□ -0.66
CUX1-220ENST00000607092 CARMIL1Q5VZK9 1371 aa10.95□□□□□ -0.66
CUX1-220ENST00000607092 ABCC2Q92887 1545 aa10.94□□□□□ -0.66
CUX1-220ENST00000607092 UHRF1BP1LA0JNW5 1464 aa10.91□□□□□ -0.66
CUX1-220ENST00000607092 IQGAP2Q13576 1575 aa10.9□□□□□ -0.66
CUX1-220ENST00000607092 GLI2P10070 1586 aa10.9□□□□□ -0.67
CUX1-220ENST00000607092 UACAQ9BZF9 1416 aa10.89□□□□□ -0.67
CUX1-220ENST00000607092 ASXL2Q76L83 1435 aa10.88□□□□□ -0.67
CUX1-220ENST00000607092 FAM9AQ8IZU1 332 aaPredicted RBP10.88□□□□□ -0.67
CUX1-220ENST00000607092 TEX14Q8IWB6 1497 aa10.87□□□□□ -0.67
CUX1-220ENST00000607092 TTBK1Q5TCY1 1321 aaPredicted RBP10.85□□□□□ -0.67
CUX1-220ENST00000607092 KDM4FA0A1W2PPD8 638 aa10.85□□□□□ -0.67
CUX1-220ENST00000607092 TSPOAP1O95153 1857 aa10.85□□□□□ -0.67
CUX1-220ENST00000607092 RAPGEF2Q9Y4G8 1499 aa10.84□□□□□ -0.67
CUX1-220ENST00000607092 UGGT2Q9NYU1 1516 aa10.84□□□□□ -0.67
CUX1-220ENST00000607092 KDM5BQ9UGL1 1544 aa10.84□□□□□ -0.67
CUX1-220ENST00000607092 DISP1Q96F81 1524 aa10.83□□□□□ -0.68
CUX1-220ENST00000607092 GOLGA3Q08378 1498 aa10.81□□□□□ -0.68
CUX1-220ENST00000607092 EPRSP07814 1512 aaKnown RBP10.81□□□□□ -0.68
CUX1-220ENST00000607092 MAP3K4Q9Y6R4 1608 aa10.78□□□□□ -0.68
CUX1-220ENST00000607092 WDR7Q9Y4E6 1490 aa10.78□□□□□ -0.68
CUX1-220ENST00000607092 KIAA0556O60303 1618 aa10.77□□□□□ -0.68
CUX1-220ENST00000607092 ADGRL1O94910 1474 aa10.77□□□□□ -0.69
CUX1-220ENST00000607092 PPRC1Q5VV67 1664 aaKnown RBP10.76□□□□□ -0.69
CUX1-220ENST00000607092 ZCCHC11Q5TAX3 1644 aaKnown RBP10.76□□□□□ -0.69
CUX1-220ENST00000607092 MAGI3Q5TCQ9 1506 aa10.74□□□□□ -0.69
CUX1-220ENST00000607092 CD109Q6YHK3 1445 aa10.73□□□□□ -0.69
CUX1-220ENST00000607092 PHLDB1Q86UU1 1377 aa10.72□□□□□ -0.69
CUX1-220ENST00000607092 CFAP43Q8NDM7 1665 aa10.72□□□□□ -0.69
CUX1-220ENST00000607092 COL17A1Q9UMD9 1497 aaPredicted RBP10.71□□□□□ -0.69
CUX1-220ENST00000607092 CTTNBP2Q8WZ74 1663 aa10.7□□□□□ -0.7
CUX1-220ENST00000607092 KCNH8Q96L42 1107 aa10.69□□□□□ -0.7
CUX1-220ENST00000607092 ABCA8O94911 1581 aa10.69□□□□□ -0.7
CUX1-220ENST00000607092 ILDR1Q86SU0 546 aaPredicted RBP10.67□□□□□ -0.7
CUX1-220ENST00000607092 PRXQ9BXM0 1461 aa10.67□□□□□ -0.7
CUX1-220ENST00000607092 ADRA2BP18089 450 aa10.66□□□□□ -0.7
CUX1-220ENST00000607092 ARAP3Q8WWN8 1544 aa10.66□□□□□ -0.7
CUX1-220ENST00000607092 HECW2Q9P2P5 1572 aa10.65□□□□□ -0.71
CUX1-220ENST00000607092 NEO1Q92859 1461 aa10.62□□□□□ -0.71
CUX1-220ENST00000607092 FOXD1Q16676 465 aa10.61□□□□□ -0.71
CUX1-220ENST00000607092 ATP10BO94823 1461 aa10.6□□□□□ -0.71
CUX1-220ENST00000607092 EEA1Q15075 1411 aa10.59□□□□□ -0.71
CUX1-220ENST00000607092 ABCA9Q8IUA7 1624 aa10.59□□□□□ -0.71
CUX1-220ENST00000607092 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.59□□□□□ -0.71
CUX1-220ENST00000607092 HNRNPUL2Q1KMD3 747 aaKnown RBP10.59□□□□□ -0.71
CUX1-220ENST00000607092 CSRNP3Q8WYN3 585 aa10.59□□□□□ -0.71
CUX1-220ENST00000607092 PPP6R1Q9UPN7 881 aa10.59□□□□□ -0.71
CUX1-220ENST00000607092 PLEKHD1A6NEE1 506 aa10.56□□□□□ -0.72
CUX1-220ENST00000607092 SAMD9Q5K651 1589 aa10.56□□□□□ -0.72
CUX1-220ENST00000607092 KIF21BO75037 1637 aa10.55□□□□□ -0.72
CUX1-220ENST00000607092 RAPGEF6Q8TEU7 1601 aa10.55□□□□□ -0.72
CUX1-220ENST00000607092 P3H3Q8IVL6 736 aa10.55□□□□□ -0.72
CUX1-220ENST00000607092 FBXO41Q8TF61 875 aa10.55□□□□□ -0.72
CUX1-220ENST00000607092 ARID4BQ4LE39 1312 aaPredicted RBP10.55□□□□□ -0.72
CUX1-220ENST00000607092 PTPRMP28827 1452 aa10.55□□□□□ -0.72
CUX1-220ENST00000607092 ARID3CA6NKF2 412 aa10.54□□□□□ -0.72
CUX1-220ENST00000607092 POGZQ7Z3K3 1410 aa10.54□□□□□ -0.72
CUX1-220ENST00000607092 CFAP74Q9C0B2 1584 aa10.53□□□□□ -0.72
CUX1-220ENST00000607092 RAPGEF3O95398 923 aa10.52□□□□□ -0.73
CUX1-220ENST00000607092 DENND4BO75064 1496 aaPredicted RBP10.52□□□□□ -0.73
CUX1-220ENST00000607092 ADAMTSL3P82987 1691 aa10.51□□□□□ -0.73
CUX1-220ENST00000607092 EFCAB5A4FU69 1503 aa10.51□□□□□ -0.73
CUX1-220ENST00000607092 FHOD3Q2V2M9 1422 aa10.5□□□□□ -0.73
CUX1-220ENST00000607092 AKNAQ7Z591 1439 aa10.5□□□□□ -0.73
CUX1-220ENST00000607092 NUP153P49790 1475 aaKnown RBP10.5□□□□□ -0.73
CUX1-220ENST00000607092 MAGI2Q86UL8 1455 aa10.5□□□□□ -0.73
CUX1-220ENST00000607092 FANCAO15360 1455 aa10.49□□□□□ -0.73
CUX1-220ENST00000607092 ARHGEF40Q8TER5 1519 aa10.48□□□□□ -0.73
CUX1-220ENST00000607092 PCF11O94913 1555 aaKnown RBP10.48□□□□□ -0.73
CUX1-220ENST00000607092 BCORL1Q5H9F3 1711 aa10.48□□□□□ -0.73
CUX1-220ENST00000607092 CDK11AQ9UQ88 783 aaPredicted RBP10.48□□□□□ -0.73
CUX1-220ENST00000607092 MADDQ8WXG6 1647 aa10.45□□□□□ -0.74
CUX1-220ENST00000607092 FRMPD1Q5SYB0 1578 aa10.45□□□□□ -0.74
CUX1-220ENST00000607092 ZMYM4Q5VZL5 1548 aa10.45□□□□□ -0.74
CUX1-220ENST00000607092 ZFYVE16Q7Z3T8 1539 aa10.44□□□□□ -0.74
CUX1-220ENST00000607092 FMN1Q68DA7 1419 aa10.44□□□□□ -0.74
CUX1-220ENST00000607092 LMTK3Q96Q04 1460 aa10.43□□□□□ -0.74
CUX1-220ENST00000607092 RANGAP1P46060 587 aaPredicted RBP10.43□□□□□ -0.74
CUX1-220ENST00000607092 EFCAB2Q5VUJ9 269 aa10.43□□□□□ -0.74
CUX1-220ENST00000607092 RICTORQ6R327 1708 aa10.43□□□□□ -0.74
CUX1-220ENST00000607092 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP10.43□□□□□ -0.747e-8■■■■■ 32
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms