RNA–Protein interactions for RNA: ENST00000597649.5

SHKBP1-215, Transcript of SH3KBP1 binding protein 1, human

TSL 5

Gene SHKBP1, Length 781 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHKBP1-215	ENST00000597649	FAM69C	Q0P6D2	419 aa		29.21	■■■□□ 2.27
SHKBP1-215	ENST00000597649	RUSC2	Q8N2Y8	1516 aa		29.2	■■■□□ 2.27
SHKBP1-215	ENST00000597649	IGF1R	P08069	1367 aa		29.17	■■■□□ 2.26
SHKBP1-215	ENST00000597649	NPM1	P06748	294 aa	Known RBP eCLIP	29.16	■■■□□ 2.26
SHKBP1-215	ENST00000597649	ABCC10	Q5T3U5	1492 aa		29.16	■■■□□ 2.26
SHKBP1-215	ENST00000597649	KIAA0586	Q9BVV6	1533 aa		29.1	■■■□□ 2.25
SHKBP1-215	ENST00000597649	ADCY10	Q96PN6	1610 aa		29.08	■■■□□ 2.25
SHKBP1-215	ENST00000597649	MAPKBP1	O60336	1514 aa		29.07	■■■□□ 2.24
SHKBP1-215	ENST00000597649	KIF27	Q86VH2	1401 aa		29.03	■■■□□ 2.24
SHKBP1-215	ENST00000597649	DIP2B	Q9P265	1576 aa		29.01	■■■□□ 2.24
SHKBP1-215	ENST00000597649	PTPRG	P23470	1445 aa		28.93	■■■□□ 2.22
SHKBP1-215	ENST00000597649	CUL7	Q14999	1698 aa		28.93	■■■□□ 2.22
SHKBP1-215	ENST00000597649	CARMIL1	Q5VZK9	1371 aa		28.92	■■■□□ 2.22
SHKBP1-215	ENST00000597649	TTBK1	Q5TCY1	1321 aa	Predicted RBP	28.92	■■■□□ 2.22
SHKBP1-215	ENST00000597649	KDM4F	A0A1W2PPD8	638 aa		28.89	■■■□□ 2.22
SHKBP1-215	ENST00000597649	TNIK	Q9UKE5	1360 aa		28.83	■■■□□ 2.21
SHKBP1-215	ENST00000597649	KDM6B	O15054	1643 aa		28.82	■■■□□ 2.2
SHKBP1-215	ENST00000597649	TSPOAP1	O95153	1857 aa		28.81	■■■□□ 2.2
SHKBP1-215	ENST00000597649	CARMIL2	Q6F5E8	1435 aa		28.78	■■■□□ 2.2
SHKBP1-215	ENST00000597649	ABCC2	Q92887	1545 aa		28.77	■■■□□ 2.2
SHKBP1-215	ENST00000597649	ASXL2	Q76L83	1435 aa		28.74	■■■□□ 2.19
SHKBP1-215	ENST00000597649	IQGAP2	Q13576	1575 aa		28.7	■■■□□ 2.18
SHKBP1-215	ENST00000597649	DISP1	Q96F81	1524 aa		28.69	■■■□□ 2.18
SHKBP1-215	ENST00000597649	PLB1	Q6P1J6	1458 aa		28.69	■■■□□ 2.18
SHKBP1-215	ENST00000597649	UHRF1BP1L	A0JNW5	1464 aa		28.68	■■■□□ 2.18
SHKBP1-215	ENST00000597649	UACA	Q9BZF9	1416 aa		28.68	■■■□□ 2.18
SHKBP1-215	ENST00000597649	GLI2	P10070	1586 aa		28.64	■■■□□ 2.18
SHKBP1-215	ENST00000597649	PPRC1	Q5VV67	1664 aa	Known RBP	28.61	■■■□□ 2.17
SHKBP1-215	ENST00000597649	COL17A1	Q9UMD9	1497 aa	Predicted RBP	28.59	■■■□□ 2.17
SHKBP1-215	ENST00000597649	RAPGEF2	Q9Y4G8	1499 aa		28.57	■■■□□ 2.16
SHKBP1-215	ENST00000597649	KDM5B	Q9UGL1	1544 aa		28.57	■■■□□ 2.16
SHKBP1-215	ENST00000597649	EPRS	P07814	1512 aa	Known RBP	28.56	■■■□□ 2.16
SHKBP1-215	ENST00000597649	UGGT2	Q9NYU1	1516 aa		28.55	■■■□□ 2.16
SHKBP1-215	ENST00000597649	KIAA0556	O60303	1618 aa		28.45	■■■□□ 2.14
SHKBP1-215	ENST00000597649	ADGRL1	O94910	1474 aa		28.45	■■■□□ 2.14
SHKBP1-215	ENST00000597649	ZCCHC11	Q5TAX3	1644 aa	Known RBP	28.44	■■■□□ 2.14
SHKBP1-215	ENST00000597649	MAP3K4	Q9Y6R4	1608 aa		28.44	■■■□□ 2.14
SHKBP1-215	ENST00000597649	TEX14	Q8IWB6	1497 aa		28.39	■■■□□ 2.13
SHKBP1-215	ENST00000597649	WDR7	Q9Y4E6	1490 aa		28.36	■■■□□ 2.13
SHKBP1-215	ENST00000597649	ILDR1	Q86SU0	546 aa	Predicted RBP	28.33	■■■□□ 2.13
SHKBP1-215	ENST00000597649	KCNH8	Q96L42	1107 aa		28.32	■■■□□ 2.12
SHKBP1-215	ENST00000597649	CD109	Q6YHK3	1445 aa		28.27	■■■□□ 2.12
SHKBP1-215	ENST00000597649	ABCA8	O94911	1581 aa		28.26	■■■□□ 2.11
SHKBP1-215	ENST00000597649	GOLGA3	Q08378	1498 aa		28.25	■■■□□ 2.11
SHKBP1-215	ENST00000597649	MAGI3	Q5TCQ9	1506 aa		28.23	■■■□□ 2.11
SHKBP1-215	ENST00000597649	PRX	Q9BXM0	1461 aa		28.23	■■■□□ 2.11
SHKBP1-215	ENST00000597649	CTTNBP2	Q8WZ74	1663 aa		28.21	■■■□□ 2.11
SHKBP1-215	ENST00000597649	ARID3C	A6NKF2	412 aa		28.15	■■■□□ 2.1
SHKBP1-215	ENST00000597649	P3H3	Q8IVL6	736 aa		28.15	■■■□□ 2.1
SHKBP1-215	ENST00000597649	HECW2	Q9P2P5	1572 aa		28.14	■■■□□ 2.1
SHKBP1-215	ENST00000597649	CFAP43	Q8NDM7	1665 aa		28.13	■■■□□ 2.09
SHKBP1-215	ENST00000597649	ATP10B	O94823	1461 aa		28.09	■■■□□ 2.09
SHKBP1-215	ENST00000597649	ARAP3	Q8WWN8	1544 aa		28.02	■■■□□ 2.08
SHKBP1-215	ENST00000597649	FAM9A	Q8IZU1	332 aa	Predicted RBP	27.98	■■■□□ 2.07
SHKBP1-215	ENST00000597649	CSRNP3	Q8WYN3	585 aa		27.97	■■■□□ 2.07
SHKBP1-215	ENST00000597649	KIF21B	O75037	1637 aa		27.96	■■■□□ 2.07
SHKBP1-215	ENST00000597649	RAPGEF3	O95398	923 aa		27.95	■■■□□ 2.06
SHKBP1-215	ENST00000597649	PHLDB1	Q86UU1	1377 aa		27.91	■■■□□ 2.06
SHKBP1-215	ENST00000597649	ABCA9	Q8IUA7	1624 aa		27.91	■■■□□ 2.06
SHKBP1-215	ENST00000597649	SAMD9	Q5K651	1589 aa		27.89	■■■□□ 2.05
SHKBP1-215	ENST00000597649	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	27.87	■■■□□ 2.05
SHKBP1-215	ENST00000597649	HNRNPUL2	Q1KMD3	747 aa	Known RBP	27.87	■■■□□ 2.05
SHKBP1-215	ENST00000597649	RANGAP1	P46060	587 aa	Predicted RBP	27.84	■■■□□ 2.05
SHKBP1-215	ENST00000597649	RAPGEF6	Q8TEU7	1601 aa		27.84	■■■□□ 2.05
SHKBP1-215	ENST00000597649	NEO1	Q92859	1461 aa		27.83	■■■□□ 2.04
SHKBP1-215	ENST00000597649	PTPRM	P28827	1452 aa		27.82	■■■□□ 2.04
SHKBP1-215	ENST00000597649	NUP153	P49790	1475 aa	Known RBP	27.82	■■■□□ 2.04
SHKBP1-215	ENST00000597649	ADAMTSL3	P82987	1691 aa		27.79	■■■□□ 2.04
SHKBP1-215	ENST00000597649	FHOD3	Q2V2M9	1422 aa		27.77	■■■□□ 2.04
SHKBP1-215	ENST00000597649	FRMPD1	Q5SYB0	1578 aa		27.76	■■■□□ 2.03
SHKBP1-215	ENST00000597649	ARID4B	Q4LE39	1312 aa	Predicted RBP	27.73	■■■□□ 2.03
SHKBP1-215	ENST00000597649	PLEKHD1	A6NEE1	506 aa		27.73	■■■□□ 2.03
SHKBP1-215	ENST00000597649	FBXO41	Q8TF61	875 aa		27.67	■■■□□ 2.02
SHKBP1-215	ENST00000597649	BCORL1	Q5H9F3	1711 aa		27.67	■■■□□ 2.02
SHKBP1-215	ENST00000597649	AKNA	Q7Z591	1439 aa		27.67	■■■□□ 2.02
SHKBP1-215	ENST00000597649	EEA1	Q15075	1411 aa		27.66	■■■□□ 2.02
SHKBP1-215	ENST00000597649	DENND4B	O75064	1496 aa	Predicted RBP	27.65	■■■□□ 2.02
SHKBP1-215	ENST00000597649	MADD	Q8WXG6	1647 aa		27.64	■■■□□ 2.02
SHKBP1-215	ENST00000597649	FANCA	O15360	1455 aa		27.61	■■■□□ 2.01
SHKBP1-215	ENST00000597649	GEMIN5	Q8TEQ6	1508 aa	Known RBP eCLIP	27.61	■■■□□ 2.01
SHKBP1-215	ENST00000597649	LMTK3	Q96Q04	1460 aa		27.58	■■■□□ 2.01
SHKBP1-215	ENST00000597649	RICTOR	Q6R327	1708 aa		27.58	■■■□□ 2.01
SHKBP1-215	ENST00000597649	ARHGEF40	Q8TER5	1519 aa		27.57	■■■□□ 2
SHKBP1-215	ENST00000597649	PCF11	O94913	1555 aa	Known RBP	27.56	■■■□□ 2
SHKBP1-215	ENST00000597649	YEATS2	Q9ULM3	1422 aa		27.54	■■■□□ 2
SHKBP1-215	ENST00000597649	TTC37	Q6PGP7	1564 aa		27.53	■■■□□ 2
SHKBP1-215	ENST00000597649	HSPA2	P54652	639 aa		27.51	■■□□□ 1.99
SHKBP1-215	ENST00000597649	PLPPR3	Q6T4P5	718 aa		27.51	■■□□□ 1.99
SHKBP1-215	ENST00000597649	EFCAB5	A4FU69	1503 aa		27.51	■■□□□ 1.99
SHKBP1-215	ENST00000597649	CDK13	Q14004	1512 aa	Known RBP	27.51	■■□□□ 1.99
SHKBP1-215	ENST00000597649	RIMS1	Q86UR5	1692 aa	Known RBP	27.5	■■□□□ 1.99
SHKBP1-215	ENST00000597649	ZMYM4	Q5VZL5	1548 aa		27.48	■■□□□ 1.99
SHKBP1-215	ENST00000597649	SIGLEC1	Q9BZZ2	1709 aa		27.48	■■□□□ 1.99
SHKBP1-215	ENST00000597649	CFAP74	Q9C0B2	1584 aa		27.47	■■□□□ 1.99
SHKBP1-215	ENST00000597649	MLEC	Q14165	292 aa		27.46	■■□□□ 1.99
SHKBP1-215	ENST00000597649	EHMT2	Q96KQ7	1210 aa		27.46	■■□□□ 1.99
SHKBP1-215	ENST00000597649	PLCH2	O75038	1416 aa		27.46	■■□□□ 1.99
SHKBP1-215	ENST00000597649	POGZ	Q7Z3K3	1410 aa		27.45	■■□□□ 1.98
SHKBP1-215	ENST00000597649	SCAPER	Q9BY12	1400 aa		27.45	■■□□□ 1.98
SHKBP1-215	ENST00000597649	ZFYVE16	Q7Z3T8	1539 aa		27.45	■■□□□ 1.98

Retrieved 100 of 20,778 RNA–protein pairs in 62.3 ms