RNA–Protein interactions for RNA: ENST00000590588.5

ZNF540-209, Transcript of zinc finger protein 540, humanhuman

TSL 3

Gene ZNF540, Length 563 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-209ENST00000590588 ADAMTS12P58397 1594 aa20.16■□□□□ 0.82
ZNF540-209ENST00000590588 WRNQ14191 1432 aaPredicted RBP eCLIP20.15■□□□□ 0.82
ZNF540-209ENST00000590588 MAPKBP1O60336 1514 aa20.07■□□□□ 0.8
ZNF540-209ENST00000590588 KDM6BO15054 1643 aa20.05■□□□□ 0.8
ZNF540-209ENST00000590588 ERICH3Q5RHP9 1530 aa20.04■□□□□ 0.8
ZNF540-209ENST00000590588 DIP2BQ9P265 1576 aa20.04■□□□□ 0.8
ZNF540-209ENST00000590588 ADCY10Q96PN6 1610 aa19.94■□□□□ 0.78
ZNF540-209ENST00000590588 TOP2BQ02880 1626 aa19.93■□□□□ 0.78
ZNF540-209ENST00000590588 TSPOAP1O95153 1857 aa19.91■□□□□ 0.78
ZNF540-209ENST00000590588 BIVM-ERCC5R4GMW8 1640 aa19.91■□□□□ 0.78
ZNF540-209ENST00000590588 RUSC2Q8N2Y8 1516 aa19.88■□□□□ 0.77
ZNF540-209ENST00000590588 ADGRL1O94910 1474 aa19.84■□□□□ 0.77
ZNF540-209ENST00000590588 KIAA0586Q9BVV6 1533 aa19.82■□□□□ 0.76
ZNF540-209ENST00000590588 PTPRGP23470 1445 aa19.79■□□□□ 0.76
ZNF540-209ENST00000590588 SUPT5HO00267 1087 aaKnown RBP19.75■□□□□ 0.75
ZNF540-209ENST00000590588 TTBK1Q5TCY1 1321 aaPredicted RBP19.75■□□□□ 0.75
ZNF540-209ENST00000590588 HECW2Q9P2P5 1572 aa19.74■□□□□ 0.75
ZNF540-209ENST00000590588 PLB1Q6P1J6 1458 aa19.74■□□□□ 0.75
ZNF540-209ENST00000590588 ASXL2Q76L83 1435 aa19.73■□□□□ 0.75
ZNF540-209ENST00000590588 GLI2P10070 1586 aa19.73■□□□□ 0.75
ZNF540-209ENST00000590588 ABCC2Q92887 1545 aa19.72■□□□□ 0.75
ZNF540-209ENST00000590588 IGF1RP08069 1367 aa19.7■□□□□ 0.74
ZNF540-209ENST00000590588 TNIKQ9UKE5 1360 aa19.7■□□□□ 0.74
ZNF540-209ENST00000590588 COL17A1Q9UMD9 1497 aaPredicted RBP19.69■□□□□ 0.74
ZNF540-209ENST00000590588 PPRC1Q5VV67 1664 aaKnown RBP19.68■□□□□ 0.74
ZNF540-209ENST00000590588 CARMIL2Q6F5E8 1435 aa19.68■□□□□ 0.74
ZNF540-209ENST00000590588 FBXO41Q8TF61 875 aa19.66■□□□□ 0.74
ZNF540-209ENST00000590588 UHRF1BP1LA0JNW5 1464 aa19.62■□□□□ 0.73
ZNF540-209ENST00000590588 TEX14Q8IWB6 1497 aa19.62■□□□□ 0.73
ZNF540-209ENST00000590588 KIF27Q86VH2 1401 aa19.6■□□□□ 0.73
ZNF540-209ENST00000590588 UACAQ9BZF9 1416 aa19.6■□□□□ 0.73
ZNF540-209ENST00000590588 EPRSP07814 1512 aaKnown RBP19.6■□□□□ 0.73
ZNF540-209ENST00000590588 CUL7Q14999 1698 aa19.59■□□□□ 0.73
ZNF540-209ENST00000590588 MAP3K4Q9Y6R4 1608 aa19.55■□□□□ 0.72
ZNF540-209ENST00000590588 CARMIL1Q5VZK9 1371 aa19.55■□□□□ 0.72
ZNF540-209ENST00000590588 KDM5BQ9UGL1 1544 aa19.53■□□□□ 0.72
ZNF540-209ENST00000590588 IQGAP2Q13576 1575 aa19.47■□□□□ 0.71
ZNF540-209ENST00000590588 DISP1Q96F81 1524 aa19.46■□□□□ 0.71
ZNF540-209ENST00000590588 ZCCHC11Q5TAX3 1644 aaKnown RBP19.43■□□□□ 0.7
ZNF540-209ENST00000590588 CD109Q6YHK3 1445 aa19.42■□□□□ 0.7
ZNF540-209ENST00000590588 WDR7Q9Y4E6 1490 aa19.41■□□□□ 0.7
ZNF540-209ENST00000590588 MAGI3Q5TCQ9 1506 aa19.4■□□□□ 0.7
ZNF540-209ENST00000590588 KCNH8Q96L42 1107 aa19.39■□□□□ 0.69
ZNF540-209ENST00000590588 UGGT2Q9NYU1 1516 aa19.35■□□□□ 0.69
ZNF540-209ENST00000590588 CFAP43Q8NDM7 1665 aa19.31■□□□□ 0.68
ZNF540-209ENST00000590588 PTPRMP28827 1452 aa19.3■□□□□ 0.68
ZNF540-209ENST00000590588 KIF21BO75037 1637 aa19.3■□□□□ 0.68
ZNF540-209ENST00000590588 KIAA0556O60303 1618 aa19.29■□□□□ 0.68
ZNF540-209ENST00000590588 ARAP3Q8WWN8 1544 aa19.27■□□□□ 0.68
ZNF540-209ENST00000590588 LMTK3Q96Q04 1460 aa19.27■□□□□ 0.67
ZNF540-209ENST00000590588 RAPGEF2Q9Y4G8 1499 aa19.27■□□□□ 0.67
ZNF540-209ENST00000590588 PHLDB1Q86UU1 1377 aa19.23■□□□□ 0.67
ZNF540-209ENST00000590588 ADAMTSL3P82987 1691 aa19.22■□□□□ 0.67
ZNF540-209ENST00000590588 PCF11O94913 1555 aaKnown RBP19.19■□□□□ 0.66
ZNF540-209ENST00000590588 ARID4BQ4LE39 1312 aaPredicted RBP19.19■□□□□ 0.66
ZNF540-209ENST00000590588 ABCA8O94911 1581 aa19.19■□□□□ 0.66
ZNF540-209ENST00000590588 GOLGA3Q08378 1498 aa19.18■□□□□ 0.66
ZNF540-209ENST00000590588 RAPGEF3O95398 923 aa19.18■□□□□ 0.66
ZNF540-209ENST00000590588 FAM9AQ8IZU1 332 aaPredicted RBP19.18■□□□□ 0.66
ZNF540-209ENST00000590588 CERKQ8TCT0 537 aa19.15■□□□□ 0.66
ZNF540-209ENST00000590588 SOCS7O14512 581 aa19.12■□□□□ 0.65
ZNF540-209ENST00000590588 HSPA2P54652 639 aa19.11■□□□□ 0.65
ZNF540-209ENST00000590588 BCORL1Q5H9F3 1711 aa19.11■□□□□ 0.65
ZNF540-209ENST00000590588 ARID3CA6NKF2 412 aa19.1■□□□□ 0.65
ZNF540-209ENST00000590588 MADDQ8WXG6 1647 aa19.08■□□□□ 0.65
ZNF540-209ENST00000590588 ILDR2Q71H61 639 aa19.08■□□□□ 0.64
ZNF540-209ENST00000590588 ATP10BO94823 1461 aa19.08■□□□□ 0.64
ZNF540-209ENST00000590588 NEO1Q92859 1461 aa19.08■□□□□ 0.64
ZNF540-209ENST00000590588 DISP3Q9P2K9 1392 aa19.06■□□□□ 0.64
ZNF540-209ENST00000590588 ABCA9Q8IUA7 1624 aa19.05■□□□□ 0.64
ZNF540-209ENST00000590588 PLPPR3Q6T4P5 718 aa19.04■□□□□ 0.64
ZNF540-209ENST00000590588 CTTNBP2Q8WZ74 1663 aa19.03■□□□□ 0.64
ZNF540-209ENST00000590588 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19■□□□□ 0.63
ZNF540-209ENST00000590588 HNRNPUL2Q1KMD3 747 aaKnown RBP19■□□□□ 0.63
ZNF540-209ENST00000590588 P3H3Q8IVL6 736 aa19■□□□□ 0.63
ZNF540-209ENST00000590588 RIMS1Q86UR5 1692 aaKnown RBP18.99■□□□□ 0.63
ZNF540-209ENST00000590588 POGZQ7Z3K3 1410 aa18.99■□□□□ 0.63
ZNF540-209ENST00000590588 FRMPD1Q5SYB0 1578 aa18.98■□□□□ 0.63
ZNF540-209ENST00000590588 DENND4BO75064 1496 aaPredicted RBP18.96■□□□□ 0.63
ZNF540-209ENST00000590588 FANCAO15360 1455 aa18.93■□□□□ 0.62
ZNF540-209ENST00000590588 DMRT2Q9Y5R5 561 aa18.93■□□□□ 0.62
ZNF540-209ENST00000590588 ARHGEF40Q8TER5 1519 aa18.93■□□□□ 0.62
ZNF540-209ENST00000590588 AKNAQ7Z591 1439 aa18.92■□□□□ 0.62
ZNF540-209ENST00000590588 FHOD3Q2V2M9 1422 aa18.91■□□□□ 0.62
ZNF540-209ENST00000590588 MLECQ14165 292 aa18.91■□□□□ 0.62
ZNF540-209ENST00000590588 PRXQ9BXM0 1461 aa18.9■□□□□ 0.62
ZNF540-209ENST00000590588 PLEKHD1A6NEE1 506 aa18.88■□□□□ 0.61
ZNF540-209ENST00000590588 YEATS2Q9ULM3 1422 aa18.86■□□□□ 0.61
ZNF540-209ENST00000590588 RICTORQ6R327 1708 aa18.86■□□□□ 0.61
ZNF540-209ENST00000590588 RAPGEF6Q8TEU7 1601 aa18.84■□□□□ 0.61
ZNF540-209ENST00000590588 MAGI2Q86UL8 1455 aa18.84■□□□□ 0.61
ZNF540-209ENST00000590588 EFCAB5A4FU69 1503 aa18.83■□□□□ 0.6
ZNF540-209ENST00000590588 ZFYVE16Q7Z3T8 1539 aa18.82■□□□□ 0.6
ZNF540-209ENST00000590588 ZMYM4Q5VZL5 1548 aa18.81■□□□□ 0.6
ZNF540-209ENST00000590588 TTC37Q6PGP7 1564 aa18.81■□□□□ 0.6
ZNF540-209ENST00000590588 CFAP74Q9C0B2 1584 aa18.8■□□□□ 0.6
ZNF540-209ENST00000590588 NUP153P49790 1475 aaKnown RBP18.79■□□□□ 0.6
ZNF540-209ENST00000590588 CEBPAP49715 358 aaPredicted RBP18.79■□□□□ 0.6
ZNF540-209ENST00000590588 SPATA31D1Q6ZQQ2 1576 aa18.78■□□□□ 0.6
ZNF540-209ENST00000590588 FER1L4A9Z1Z3 1794 aa18.78■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms