RNA–Protein interactions for RNA: ENST00000588972.1

ATG4D-210, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 5

Gene ATG4D, Length 632 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-210ENST00000588972 TSHZ2Q9NRE2 1034 aa15.43■□□□□ 0.06
ATG4D-210ENST00000588972 TRIM41Q8WV44 630 aa15.36■□□□□ 0.05
ATG4D-210ENST00000588972 TPRNQ4KMQ1 711 aa15.34■□□□□ 0.05
ATG4D-210ENST00000588972 SHROOM4Q9ULL8 1493 aa15.32■□□□□ 0.04
ATG4D-210ENST00000588972 HS6ST3Q8IZP7 471 aa15.29■□□□□ 0.04
ATG4D-210ENST00000588972 RNF25Q96BH1 459 aaPredicted RBP15.24■□□□□ 0.03
ATG4D-210ENST00000588972 GSE1Q14687 1217 aa15.23■□□□□ 0.03
ATG4D-210ENST00000588972 DNAJC5Q9H3Z4 198 aa15.23■□□□□ 0.03
ATG4D-210ENST00000588972 ZCCHC6Q5VYS8 1495 aaKnown RBP15.21■□□□□ 0.03
ATG4D-210ENST00000588972 DCAF1Q9Y4B6 1507 aa15.21■□□□□ 0.03
ATG4D-210ENST00000588972 CC2D2AQ9P2K1 1620 aa15.21■□□□□ 0.02
ATG4D-210ENST00000588972 CECR2Q9BXF3 1484 aa15.2■□□□□ 0.02
ATG4D-210ENST00000588972 NUBP1P53384 320 aa15.18■□□□□ 0.02
ATG4D-210ENST00000588972 EIF4G1Q04637 1599 aaKnown RBP15.13■□□□□ 0.01
ATG4D-210ENST00000588972 SCRIBQ14160 1630 aa15.12■□□□□ 0.01
ATG4D-210ENST00000588972 RIOK3O14730 519 aaKnown RBP15.1■□□□□ 0.01
ATG4D-210ENST00000588972 NKX1-1Q15270 411 aaPredicted RBP15.1■□□□□ 0.01
ATG4D-210ENST00000588972 DCAF8Q5TAQ9 597 aa15.09■□□□□ 0.01
ATG4D-210ENST00000588972 NBR1Q14596 966 aa15.07■□□□□ 0
ATG4D-210ENST00000588972 CACNB1Q02641 598 aaPredicted RBP15.04■□□□□ -0
ATG4D-210ENST00000588972 SPDYE1Q8NFV5 336 aaPredicted RBP15.04■□□□□ -0
ATG4D-210ENST00000588972 GTPBP6O43824 516 aaPredicted RBP15.03■□□□□ -0
ATG4D-210ENST00000588972 CREBZFQ9NS37 354 aa15.01□□□□□ -0.01
ATG4D-210ENST00000588972 FAM212AQ96EL1 285 aa15□□□□□ -0.01
ATG4D-210ENST00000588972 MNX1P50219 401 aaPredicted RBP14.99□□□□□ -0.01
ATG4D-210ENST00000588972 VGFO15240 615 aaPredicted RBP14.98□□□□□ -0.01
ATG4D-210ENST00000588972 STK25O00506 426 aa14.97□□□□□ -0.01
ATG4D-210ENST00000588972 AKT1S1Q96B36 256 aa14.96□□□□□ -0.01
ATG4D-210ENST00000588972 CHRM1P11229 460 aaPredicted RBP14.95□□□□□ -0.02
ATG4D-210ENST00000588972 PRR29P0C7W0 189 aa14.94□□□□□ -0.02
ATG4D-210ENST00000588972 CLEC11AQ9Y240 323 aa14.93□□□□□ -0.02
ATG4D-210ENST00000588972 RBM42Q9BTD8 480 aaKnown RBP14.92□□□□□ -0.02
ATG4D-210ENST00000588972 RASEFQ8IZ41 740 aa14.91□□□□□ -0.02
ATG4D-210ENST00000588972 SGIP1Q9BQI5 828 aa14.9□□□□□ -0.02
ATG4D-210ENST00000588972 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP14.85□□□□□ -0.03
ATG4D-210ENST00000588972 ZFP91Q96JP5 570 aaPredicted RBP14.85□□□□□ -0.03
ATG4D-210ENST00000588972 REM2Q8IYK8 340 aaPredicted RBP14.84□□□□□ -0.03
ATG4D-210ENST00000588972 BCL11BQ9C0K0 894 aaPredicted RBP14.84□□□□□ -0.03
ATG4D-210ENST00000588972 STK24Q9Y6E0 443 aa14.84□□□□□ -0.03
ATG4D-210ENST00000588972 PYGBP11216 843 aa14.79□□□□□ -0.04
ATG4D-210ENST00000588972 RYDENQ9NUL5 291 aaKnown RBP14.79□□□□□ -0.04
ATG4D-210ENST00000588972 PITPNM1O00562 1244 aa14.66□□□□□ -0.06
ATG4D-210ENST00000588972 CUX2O14529 1486 aa14.65□□□□□ -0.06
ATG4D-210ENST00000588972 P3H3Q8IVL6 736 aa14.62□□□□□ -0.07
ATG4D-210ENST00000588972 ZNF467Q7Z7K2 595 aaPredicted RBP14.59□□□□□ -0.07
ATG4D-210ENST00000588972 ERCC6Q03468 1493 aa14.57□□□□□ -0.08
ATG4D-210ENST00000588972 CADPS2Q86UW7 1296 aa14.57□□□□□ -0.08
ATG4D-210ENST00000588972 TSPYL2Q9H2G4 693 aaPredicted RBP14.54□□□□□ -0.08
ATG4D-210ENST00000588972 NCAPD3P42695 1498 aa14.54□□□□□ -0.08
ATG4D-210ENST00000588972 PDAP1Q13442 181 aaKnown RBP14.53□□□□□ -0.08
ATG4D-210ENST00000588972 KCNV2Q8TDN2 545 aa14.52□□□□□ -0.09
ATG4D-210ENST00000588972 CHADLQ6NUI6 762 aa14.51□□□□□ -0.09
ATG4D-210ENST00000588972 WDR70Q9NW82 654 aa14.51□□□□□ -0.09
ATG4D-210ENST00000588972 PCDHB8Q9UN66 801 aa14.49□□□□□ -0.09
ATG4D-210ENST00000588972 PCDHB13Q9Y5F0 798 aa14.49□□□□□ -0.09
ATG4D-210ENST00000588972 HMGXB3Q12766 1538 aa14.46□□□□□ -0.09
ATG4D-210ENST00000588972 ATAD2BQ9ULI0 1458 aa14.46□□□□□ -0.09
ATG4D-210ENST00000588972 TIMELESSQ9UNS1 1208 aa14.46□□□□□ -0.09
ATG4D-210ENST00000588972 FARP1Q9Y4F1 1045 aaPredicted RBP14.46□□□□□ -0.09
ATG4D-210ENST00000588972 GTF3C3Q9Y5Q9 886 aa14.46□□□□□ -0.09
ATG4D-210ENST00000588972 SMARCA2P51531 1590 aa14.45□□□□□ -0.1
ATG4D-210ENST00000588972 MFRPQ9BY79 579 aa14.45□□□□□ -0.1
ATG4D-210ENST00000588972 TULP1O00294 542 aaPredicted RBP14.44□□□□□ -0.1
ATG4D-210ENST00000588972 PSEN1P49768 467 aa14.42□□□□□ -0.1
ATG4D-210ENST00000588972 LMOD2Q6P5Q4 547 aa14.42□□□□□ -0.1
ATG4D-210ENST00000588972 DHX30Q7L2E3 1194 aaKnown RBP eCLIP14.42□□□□□ -0.1
ATG4D-210ENST00000588972 CCDC61Q9Y6R9 512 aa14.42□□□□□ -0.1
ATG4D-210ENST00000588972 SMARCA4P51532 1647 aa14.41□□□□□ -0.1
ATG4D-210ENST00000588972 ZNF579Q8NAF0 562 aaKnown RBP14.41□□□□□ -0.1
ATG4D-210ENST00000588972 TMEM132AQ24JP5 1023 aa14.39□□□□□ -0.11
ATG4D-210ENST00000588972 NESP48681 1621 aa14.37□□□□□ -0.11
ATG4D-210ENST00000588972 THOC2Q8NI27 1593 aaKnown RBP14.34□□□□□ -0.11
ATG4D-210ENST00000588972 PPP1R37O75864 691 aa14.33□□□□□ -0.12
ATG4D-210ENST00000588972 BAZ1BQ9UIG0 1483 aaKnown RBP14.32□□□□□ -0.12
ATG4D-210ENST00000588972 BAZ1AQ9NRL2 1556 aaPredicted RBP14.3□□□□□ -0.12
ATG4D-210ENST00000588972 FBXO22Q8NEZ5 403 aa14.3□□□□□ -0.12
ATG4D-210ENST00000588972 ARHGEF1Q92888 912 aaKnown RBP14.3□□□□□ -0.12
ATG4D-210ENST00000588972 PRKAR2AP13861 404 aaKnown RBP14.29□□□□□ -0.12
ATG4D-210ENST00000588972 IFNL1Q8IU54 200 aa14.29□□□□□ -0.12
ATG4D-210ENST00000588972 PEG3Q9GZU2 1588 aa14.29□□□□□ -0.12
ATG4D-210ENST00000588972 LAMC3Q9Y6N6 1575 aa14.29□□□□□ -0.12
ATG4D-210ENST00000588972 EFCAB3Q8N7B9 438 aa14.28□□□□□ -0.12
ATG4D-210ENST00000588972 NLRP6P59044 892 aa14.27□□□□□ -0.13
ATG4D-210ENST00000588972 SOX12O15370 315 aa14.25□□□□□ -0.13
ATG4D-210ENST00000588972 E2F4Q16254 413 aa14.25□□□□□ -0.13
ATG4D-210ENST00000588972 ERICH6Q7L0X2 663 aa14.24□□□□□ -0.13
ATG4D-210ENST00000588972 CABP2Q9NPB3 220 aa14.24□□□□□ -0.13
ATG4D-210ENST00000588972 PHF8Q9UPP1 1060 aa14.24□□□□□ -0.13
ATG4D-210ENST00000588972 KIF21AQ7Z4S6 1674 aa14.23□□□□□ -0.13
ATG4D-210ENST00000588972 MAP3K13O43283 966 aa14.22□□□□□ -0.13
ATG4D-210ENST00000588972 KIF12Q96FN5 646 aa14.21□□□□□ -0.13
ATG4D-210ENST00000588972 PAK3O75914 559 aaPredicted RBP14.2□□□□□ -0.14
ATG4D-210ENST00000588972 FXR2P51116 673 aaKnown RBP eCLIP14.2□□□□□ -0.14
ATG4D-210ENST00000588972 ZC3H15Q8WU90 426 aaKnown RBP14.19□□□□□ -0.14
ATG4D-210ENST00000588972 PDS5BQ9NTI5 1447 aa14.18□□□□□ -0.14
ATG4D-210ENST00000588972 TESPA1A2RU30 521 aaPredicted RBP14.18□□□□□ -0.14
ATG4D-210ENST00000588972 SEMA3EO15041 775 aa14.18□□□□□ -0.14
ATG4D-210ENST00000588972 BRPF1P55201 1214 aaPredicted RBP14.18□□□□□ -0.14
ATG4D-210ENST00000588972 NCKAP5LQ9HCH0 1330 aa14.15□□□□□ -0.15
ATG4D-210ENST00000588972 MROH2BQ7Z745 1585 aa14.14□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms