RNA–Protein interactions for RNA: ENST00000582331.2

CCDC47-205, Transcript of coiled-coil domain containing 47, humanhuman

TSL 3

Gene CCDC47, Length 693 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-205ENST00000582331 GRIN2AQ12879 1464 aa13.96□□□□□ -0.17
CCDC47-205ENST00000582331 ABCA5Q8WWZ7 1642 aa13.96□□□□□ -0.17
CCDC47-205ENST00000582331 CEP170Q5SW79 1584 aa13.94□□□□□ -0.18
CCDC47-205ENST00000582331 NUP160Q12769 1436 aa13.92□□□□□ -0.18
CCDC47-205ENST00000582331 ADAMTS12P58397 1594 aa13.88□□□□□ -0.19
CCDC47-205ENST00000582331 WRNQ14191 1432 aaPredicted RBP eCLIP13.88□□□□□ -0.19
CCDC47-205ENST00000582331 KIF13AQ9H1H9 1805 aa13.87□□□□□ -0.19
CCDC47-205ENST00000582331 SHROOM2Q13796 1616 aa13.87□□□□□ -0.19
CCDC47-205ENST00000582331 FHAD1B1AJZ9 1412 aa13.87□□□□□ -0.19
CCDC47-205ENST00000582331 HOXD11P31277 338 aaPredicted RBP13.85□□□□□ -0.19
CCDC47-205ENST00000582331 FAM69CQ0P6D2 419 aa13.85□□□□□ -0.19
CCDC47-205ENST00000582331 NPM1P06748 294 aaKnown RBP eCLIP13.84□□□□□ -0.19
CCDC47-205ENST00000582331 JPH4Q96JJ6 628 aa13.84□□□□□ -0.19
CCDC47-205ENST00000582331 PRG4Q92954 1404 aaPredicted RBP13.83□□□□□ -0.2
CCDC47-205ENST00000582331 NCBP3Q53F19 620 aaKnown RBP13.82□□□□□ -0.2
CCDC47-205ENST00000582331 RNF216Q9NWF9 866 aaPredicted RBP13.81□□□□□ -0.2
CCDC47-205ENST00000582331 ABCC10Q5T3U5 1492 aa13.8□□□□□ -0.2
CCDC47-205ENST00000582331 ERICH3Q5RHP9 1530 aa13.8□□□□□ -0.2
CCDC47-205ENST00000582331 KDM4FA0A1W2PPD8 638 aa13.78□□□□□ -0.2
CCDC47-205ENST00000582331 TOP2BQ02880 1626 aa13.75□□□□□ -0.21
CCDC47-205ENST00000582331 BIVM-ERCC5R4GMW8 1640 aa13.75□□□□□ -0.21
CCDC47-205ENST00000582331 MAPKBP1O60336 1514 aa13.74□□□□□ -0.21
CCDC47-205ENST00000582331 DIP2BQ9P265 1576 aa13.73□□□□□ -0.21
CCDC47-205ENST00000582331 KDM6BO15054 1643 aa13.72□□□□□ -0.21
CCDC47-205ENST00000582331 ILDR1Q86SU0 546 aaPredicted RBP13.72□□□□□ -0.21
CCDC47-205ENST00000582331 SUPT5HO00267 1087 aaKnown RBP13.7□□□□□ -0.22
CCDC47-205ENST00000582331 ADCY10Q96PN6 1610 aa13.69□□□□□ -0.22
CCDC47-205ENST00000582331 RUSC2Q8N2Y8 1516 aa13.69□□□□□ -0.22
CCDC47-205ENST00000582331 DCAF8L1A6NGE4 600 aa13.67□□□□□ -0.22
CCDC47-205ENST00000582331 TSPOAP1O95153 1857 aa13.65□□□□□ -0.22
CCDC47-205ENST00000582331 KIAA0586Q9BVV6 1533 aa13.63□□□□□ -0.23
CCDC47-205ENST00000582331 PTPRGP23470 1445 aa13.59□□□□□ -0.23
CCDC47-205ENST00000582331 TTBK1Q5TCY1 1321 aaPredicted RBP13.59□□□□□ -0.23
CCDC47-205ENST00000582331 IGF1RP08069 1367 aa13.57□□□□□ -0.24
CCDC47-205ENST00000582331 ADGRL1O94910 1474 aa13.55□□□□□ -0.24
CCDC47-205ENST00000582331 PLB1Q6P1J6 1458 aa13.54□□□□□ -0.24
CCDC47-205ENST00000582331 ABCC2Q92887 1545 aa13.54□□□□□ -0.24
CCDC47-205ENST00000582331 NPM3O75607 178 aaKnown RBP13.53□□□□□ -0.24
CCDC47-205ENST00000582331 TNIKQ9UKE5 1360 aa13.53□□□□□ -0.24
CCDC47-205ENST00000582331 ASXL2Q76L83 1435 aa13.53□□□□□ -0.24
CCDC47-205ENST00000582331 GLI2P10070 1586 aa13.53□□□□□ -0.24
CCDC47-205ENST00000582331 CARMIL2Q6F5E8 1435 aa13.52□□□□□ -0.25
CCDC47-205ENST00000582331 KIF27Q86VH2 1401 aa13.52□□□□□ -0.25
CCDC47-205ENST00000582331 CUL7Q14999 1698 aa13.51□□□□□ -0.25
CCDC47-205ENST00000582331 PPRC1Q5VV67 1664 aaKnown RBP13.5□□□□□ -0.25
CCDC47-205ENST00000582331 UHRF1BP1LA0JNW5 1464 aa13.48□□□□□ -0.25
CCDC47-205ENST00000582331 COL17A1Q9UMD9 1497 aaPredicted RBP13.48□□□□□ -0.25
CCDC47-205ENST00000582331 CARMIL1Q5VZK9 1371 aa13.47□□□□□ -0.25
CCDC47-205ENST00000582331 UACAQ9BZF9 1416 aa13.47□□□□□ -0.25
CCDC47-205ENST00000582331 HECW2Q9P2P5 1572 aa13.46□□□□□ -0.25
CCDC47-205ENST00000582331 TEX14Q8IWB6 1497 aa13.44□□□□□ -0.26
CCDC47-205ENST00000582331 EPRSP07814 1512 aaKnown RBP13.44□□□□□ -0.26
CCDC47-205ENST00000582331 MAP3K4Q9Y6R4 1608 aa13.42□□□□□ -0.26
CCDC47-205ENST00000582331 IQGAP2Q13576 1575 aa13.42□□□□□ -0.26
CCDC47-205ENST00000582331 KDM5BQ9UGL1 1544 aa13.41□□□□□ -0.26
CCDC47-205ENST00000582331 DISP1Q96F81 1524 aa13.39□□□□□ -0.27
CCDC47-205ENST00000582331 KCNA4P22459 653 aa13.39□□□□□ -0.27
CCDC47-205ENST00000582331 ZCCHC11Q5TAX3 1644 aaKnown RBP13.36□□□□□ -0.27
CCDC47-205ENST00000582331 FBXO41Q8TF61 875 aa13.35□□□□□ -0.27
CCDC47-205ENST00000582331 RNF39Q9H2S5 420 aa13.34□□□□□ -0.27
CCDC47-205ENST00000582331 UGGT2Q9NYU1 1516 aa13.34□□□□□ -0.27
CCDC47-205ENST00000582331 WDR7Q9Y4E6 1490 aa13.33□□□□□ -0.28
CCDC47-205ENST00000582331 CD109Q6YHK3 1445 aa13.32□□□□□ -0.28
CCDC47-205ENST00000582331 KCNH8Q96L42 1107 aa13.32□□□□□ -0.28
CCDC47-205ENST00000582331 MAGI3Q5TCQ9 1506 aa13.3□□□□□ -0.28
CCDC47-205ENST00000582331 RAPGEF2Q9Y4G8 1499 aa13.29□□□□□ -0.28
CCDC47-205ENST00000582331 KIAA0556O60303 1618 aa13.29□□□□□ -0.28
CCDC47-205ENST00000582331 CACNB1Q02641 598 aaPredicted RBP13.29□□□□□ -0.28
CCDC47-205ENST00000582331 CFAP43Q8NDM7 1665 aa13.27□□□□□ -0.29
CCDC47-205ENST00000582331 KIF21BO75037 1637 aa13.24□□□□□ -0.29
CCDC47-205ENST00000582331 GOLGA3Q08378 1498 aa13.22□□□□□ -0.29
CCDC47-205ENST00000582331 ABCA8O94911 1581 aa13.21□□□□□ -0.29
CCDC47-205ENST00000582331 ARAP3Q8WWN8 1544 aa13.21□□□□□ -0.29
CCDC47-205ENST00000582331 C1QBPQ07021 282 aaKnown RBP13.2□□□□□ -0.3
CCDC47-205ENST00000582331 PTPRMP28827 1452 aa13.2□□□□□ -0.3
CCDC47-205ENST00000582331 FAM9AQ8IZU1 332 aaPredicted RBP13.19□□□□□ -0.3
CCDC47-205ENST00000582331 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.19□□□□□ -0.36e-7■■□□□ 11.9
CCDC47-205ENST00000582331 PHLDB1Q86UU1 1377 aa13.18□□□□□ -0.3
CCDC47-205ENST00000582331 ADAMTSL3P82987 1691 aa13.17□□□□□ -0.3
CCDC47-205ENST00000582331 CTTNBP2Q8WZ74 1663 aa13.16□□□□□ -0.3
CCDC47-205ENST00000582331 RAPGEF3O95398 923 aa13.16□□□□□ -0.3
CCDC47-205ENST00000582331 ARID3CA6NKF2 412 aa13.15□□□□□ -0.3
CCDC47-205ENST00000582331 ARID4BQ4LE39 1312 aaPredicted RBP13.14□□□□□ -0.31
CCDC47-205ENST00000582331 ATP10BO94823 1461 aa13.13□□□□□ -0.31
CCDC47-205ENST00000582331 PCF11O94913 1555 aaKnown RBP13.11□□□□□ -0.31
CCDC47-205ENST00000582331 P3H3Q8IVL6 736 aa13.11□□□□□ -0.31
CCDC47-205ENST00000582331 BCORL1Q5H9F3 1711 aa13.1□□□□□ -0.31
CCDC47-205ENST00000582331 NEO1Q92859 1461 aa13.1□□□□□ -0.31
CCDC47-205ENST00000582331 LMTK3Q96Q04 1460 aa13.1□□□□□ -0.31
CCDC47-205ENST00000582331 ABCA9Q8IUA7 1624 aa13.1□□□□□ -0.31
CCDC47-205ENST00000582331 MADDQ8WXG6 1647 aa13.09□□□□□ -0.31
CCDC47-205ENST00000582331 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.07□□□□□ -0.32
CCDC47-205ENST00000582331 HNRNPUL2Q1KMD3 747 aaKnown RBP13.07□□□□□ -0.32
CCDC47-205ENST00000582331 HSPA2P54652 639 aa13.06□□□□□ -0.32
CCDC47-205ENST00000582331 PRXQ9BXM0 1461 aa13.05□□□□□ -0.32
CCDC47-205ENST00000582331 CERKQ8TCT0 537 aa13.05□□□□□ -0.32
CCDC47-205ENST00000582331 FRMPD1Q5SYB0 1578 aa13.04□□□□□ -0.32
CCDC47-205ENST00000582331 RIMS1Q86UR5 1692 aaKnown RBP13.03□□□□□ -0.32
CCDC47-205ENST00000582331 DENND4BO75064 1496 aaPredicted RBP13.02□□□□□ -0.33
CCDC47-205ENST00000582331 POGZQ7Z3K3 1410 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms