RNA–Protein interactions for RNA: ENST00000578067.5

LIMD2-203, Transcript of LIM domain containing 2, humanhuman

TSL 1 (best)

Gene LIMD2, Length 2,019 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD2-203ENST00000578067 GRIN2BQ13224 1484 aa42.42■■■■■ 4.38
LIMD2-203ENST00000578067 EFCAB5A4FU69 1503 aa42.4■■■■■ 4.38
LIMD2-203ENST00000578067 FHAD1B1AJZ9 1412 aa42.39■■■■■ 4.38
LIMD2-203ENST00000578067 ZNF608Q9ULD9 1512 aaPredicted RBP42.38■■■■■ 4.38
LIMD2-203ENST00000578067 ADAMTS12P58397 1594 aa42.33■■■■■ 4.37
LIMD2-203ENST00000578067 ZEB1P37275 1124 aaPredicted RBP42.29■■■■■ 4.36
LIMD2-203ENST00000578067 KANK4Q5T7N3 995 aaPredicted RBP42.26■■■■■ 4.36
LIMD2-203ENST00000578067 P3H3Q8IVL6 736 aa42.26■■■■■ 4.36
LIMD2-203ENST00000578067 FHOD3Q2V2M9 1422 aa42.22■■■■■ 4.35
LIMD2-203ENST00000578067 MAP3K1Q13233 1512 aa42.21■■■■■ 4.35
LIMD2-203ENST00000578067 EIF4G3O43432 1585 aaKnown RBP42.2■■■■■ 4.35
LIMD2-203ENST00000578067 SAMD9Q5K651 1589 aa42.14■■■■■ 4.34
LIMD2-203ENST00000578067 TIAM1Q13009 1591 aa42.13■■■■■ 4.33
LIMD2-203ENST00000578067 PCF11O94913 1555 aaKnown RBP42.11■■■■■ 4.33
LIMD2-203ENST00000578067 SNAPC4Q5SXM2 1469 aa42.08■■■■■ 4.33
LIMD2-203ENST00000578067 FMN1Q68DA7 1419 aa42.06■■■■■ 4.32
LIMD2-203ENST00000578067 FYCO1Q9BQS8 1478 aa42.05■■■■■ 4.32
LIMD2-203ENST00000578067 CASKIN1Q8WXD9 1431 aa42.04■■■■■ 4.32
LIMD2-203ENST00000578067 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP42.03■■■■■ 4.32
LIMD2-203ENST00000578067 IQGAP2Q13576 1575 aa42■■■■■ 4.31
LIMD2-203ENST00000578067 MAGI1Q96QZ7 1491 aaPredicted RBP41.97■■■■■ 4.31
LIMD2-203ENST00000578067 CFAP43Q8NDM7 1665 aa41.96■■■■■ 4.31
LIMD2-203ENST00000578067 CCER1Q8TC90 406 aaPredicted RBP41.95■■■■■ 4.31
LIMD2-203ENST00000578067 LRRC9Q6ZRR7 1453 aa41.95■■■■■ 4.31
LIMD2-203ENST00000578067 HNRNPUL2Q1KMD3 747 aaKnown RBP41.93■■■■■ 4.3
LIMD2-203ENST00000578067 ATP1B4Q9UN42 357 aaPredicted RBP41.91■■■■■ 4.3
LIMD2-203ENST00000578067 GRIN2AQ12879 1464 aa41.91■■■■■ 4.3
LIMD2-203ENST00000578067 RRBP1Q9P2E9 1410 aaKnown RBP41.9■■■■■ 4.3
LIMD2-203ENST00000578067 KIAA0586Q9BVV6 1533 aa41.84■■■■■ 4.29
LIMD2-203ENST00000578067 SYNJ2O15056 1496 aa41.83■■■■■ 4.29
LIMD2-203ENST00000578067 UGGT2Q9NYU1 1516 aa41.81■■■■■ 4.28
LIMD2-203ENST00000578067 CHMP7Q8WUX9 453 aaPredicted RBP41.76■■■■■ 4.28
LIMD2-203ENST00000578067 CCNB3Q8WWL7 1395 aa41.74■■■■■ 4.27
LIMD2-203ENST00000578067 CEP170Q5SW79 1584 aa41.63■■■■■ 4.25
LIMD2-203ENST00000578067 PHLDB1Q86UU1 1377 aa41.62■■■■■ 4.25
LIMD2-203ENST00000578067 FBLN2P98095 1184 aa41.61■■■■■ 4.25
LIMD2-203ENST00000578067 LRRIQ1Q96JM4 1722 aa41.6■■■■■ 4.25
LIMD2-203ENST00000578067 DISP1Q96F81 1524 aa41.58■■■■■ 4.25
LIMD2-203ENST00000578067 KIAA0556O60303 1618 aa41.57■■■■■ 4.25
LIMD2-203ENST00000578067 NUP160Q12769 1436 aa41.56■■■■■ 4.24
LIMD2-203ENST00000578067 HECW1Q76N89 1606 aa41.53■■■■■ 4.24
LIMD2-203ENST00000578067 MTUS2Q5JR59 1369 aa41.52■■■■■ 4.24
LIMD2-203ENST00000578067 CCDC18Q5T9S5 1454 aa41.52■■■■■ 4.24
LIMD2-203ENST00000578067 EHBP1L1Q8N3D4 1523 aa41.4■■■■■ 4.22
LIMD2-203ENST00000578067 EPRSP07814 1512 aaKnown RBP41.39■■■■■ 4.22
LIMD2-203ENST00000578067 ITGAEP38570 1179 aa41.34■■■■■ 4.21
LIMD2-203ENST00000578067 JPH4Q96JJ6 628 aa41.34■■■■■ 4.21
LIMD2-203ENST00000578067 FAM50AQ14320 339 aaKnown RBP41.32■■■■■ 4.2
LIMD2-203ENST00000578067 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP41.31■■■■■ 4.2
LIMD2-203ENST00000578067 SUPT6HQ7KZ85 1726 aaKnown RBP41.31■■■■■ 4.2
LIMD2-203ENST00000578067 CARMIL2Q6F5E8 1435 aa41.31■■■■■ 4.2
LIMD2-203ENST00000578067 NCOA2Q15596 1464 aa41.3■■■■■ 4.2
LIMD2-203ENST00000578067 MAGI3Q5TCQ9 1506 aa41.29■■■■■ 4.2
LIMD2-203ENST00000578067 FGD6Q6ZV73 1430 aa41.27■■■■■ 4.2
LIMD2-203ENST00000578067 CDK13Q14004 1512 aaKnown RBP41.25■■■■■ 4.19
LIMD2-203ENST00000578067 RAPGEF6Q8TEU7 1601 aa41.25■■■■■ 4.19
LIMD2-203ENST00000578067 ARHGEF11O15085 1522 aa41.21■■■■■ 4.19
LIMD2-203ENST00000578067 MYOM3Q5VTT5 1437 aa41.19■■■■■ 4.18
LIMD2-203ENST00000578067 NUP153P49790 1475 aaKnown RBP41.18■■■■■ 4.18
LIMD2-203ENST00000578067 CHD1O14646 1710 aa41.16■■■■■ 4.18
LIMD2-203ENST00000578067 DHX57Q6P158 1386 aaKnown RBP41.15■■■■■ 4.18
LIMD2-203ENST00000578067 ARID3CA6NKF2 412 aa41.12■■■■■ 4.17
LIMD2-203ENST00000578067 CLSPNQ9HAW4 1339 aa41.1■■■■■ 4.17
LIMD2-203ENST00000578067 SETD5Q9C0A6 1442 aa41.07■■■■■ 4.17
LIMD2-203ENST00000578067 PLB1Q6P1J6 1458 aa41.06■■■■■ 4.16
LIMD2-203ENST00000578067 RAB3GAP2Q9H2M9 1393 aa41.06■■■■■ 4.16
LIMD2-203ENST00000578067 CDK11AQ9UQ88 783 aaPredicted RBP41■■■■■ 4.15
LIMD2-203ENST00000578067 PRG4Q92954 1404 aaPredicted RBP41■■■■■ 4.15
LIMD2-203ENST00000578067 PTPN23Q9H3S7 1636 aa40.97■■■■■ 4.15
LIMD2-203ENST00000578067 ABCA8O94911 1581 aa40.93■■■■■ 4.14
LIMD2-203ENST00000578067 TCOF1Q13428 1488 aaKnown RBP40.92■■■■■ 4.14
LIMD2-203ENST00000578067 MIA2Q96PC5 1412 aa40.91■■■■■ 4.14
LIMD2-203ENST00000578067 SHROOM2Q13796 1616 aa40.88■■■■■ 4.14
LIMD2-203ENST00000578067 TROQ12816 1431 aaPredicted RBP40.85■■■■■ 4.13
LIMD2-203ENST00000578067 PTPRKQ15262 1439 aa40.84■■■■■ 4.13
LIMD2-203ENST00000578067 PTPRGP23470 1445 aa40.83■■■■■ 4.13
LIMD2-203ENST00000578067 HFM1A2PYH4 1435 aa40.75■■■■■ 4.11
LIMD2-203ENST00000578067 ATP10BO94823 1461 aa40.73■■■■■ 4.11
LIMD2-203ENST00000578067 ADCY10Q96PN6 1610 aa40.71■■■■■ 4.11
LIMD2-203ENST00000578067 CLASP1Q7Z460 1538 aa40.69■■■■■ 4.1
LIMD2-203ENST00000578067 MAPKBP1O60336 1514 aa40.65■■■■■ 4.1
LIMD2-203ENST00000578067 PLEKHD1A6NEE1 506 aa40.64■■■■■ 4.1
LIMD2-203ENST00000578067 NAIPQ13075 1403 aa40.63■■■■■ 4.09
LIMD2-203ENST00000578067 KIF14Q15058 1648 aa40.61■■■■■ 4.09
LIMD2-203ENST00000578067 UACAQ9BZF9 1416 aa40.6■■■■■ 4.09
LIMD2-203ENST00000578067 ERCC6L2Q5T890 1561 aa40.59■■■■■ 4.09
LIMD2-203ENST00000578067 ITSN2Q9NZM3 1697 aa40.57■■■■■ 4.09
LIMD2-203ENST00000578067 AKNAQ7Z591 1439 aa40.55■■■■■ 4.08
LIMD2-203ENST00000578067 GPATCH8Q9UKJ3 1502 aaKnown RBP40.55■■■■■ 4.08
LIMD2-203ENST00000578067 ZNF316A6NFI3 1004 aaPredicted RBP40.5■■■■■ 4.07
LIMD2-203ENST00000578067 CHIC2Q9UKJ5 165 aa40.5■■■■■ 4.07
LIMD2-203ENST00000578067 CFDP1Q9UEE9 299 aaPredicted RBP40.5■■■■■ 4.07
LIMD2-203ENST00000578067 ZNF644Q9H582 1327 aaPredicted RBP40.49■■■■■ 4.07
LIMD2-203ENST00000578067 DAPK1P53355 1430 aa40.49■■■■■ 4.07
LIMD2-203ENST00000578067 DNMT1P26358 1616 aaKnown RBP40.48■■■■■ 4.07
LIMD2-203ENST00000578067 GCC2Q8IWJ2 1684 aa40.47■■■■■ 4.07
LIMD2-203ENST00000578067 RRP7BPQ9NSQ0 103 aa40.46■■■■■ 4.07
LIMD2-203ENST00000578067 ABCC10Q5T3U5 1492 aa40.45■■■■■ 4.07
LIMD2-203ENST00000578067 ABCC5O15440 1437 aa40.44■■■■■ 4.06
LIMD2-203ENST00000578067 ABCC2Q92887 1545 aa40.43■■■■■ 4.06
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms