RNA–Protein interactions for RNA: ENST00000577246.5

COPS3-214, Transcript of COP9 signalosome subunit 3, humanhuman

TSL 2

Gene COPS3, Length 639 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS3-214ENST00000577246 KIF13AQ9H1H9 1805 aa23.77■■□□□ 1.4
COPS3-214ENST00000577246 RUSC2Q8N2Y8 1516 aa23.77■■□□□ 1.4
COPS3-214ENST00000577246 FAM69CQ0P6D2 419 aa23.76■■□□□ 1.39
COPS3-214ENST00000577246 ABCC10Q5T3U5 1492 aa23.75■■□□□ 1.39
COPS3-214ENST00000577246 MAPKBP1O60336 1514 aa23.74■■□□□ 1.39
COPS3-214ENST00000577246 KIAA0586Q9BVV6 1533 aa23.66■■□□□ 1.38
COPS3-214ENST00000577246 DIP2BQ9P265 1576 aa23.65■■□□□ 1.38
COPS3-214ENST00000577246 ADCY10Q96PN6 1610 aa23.63■■□□□ 1.37
COPS3-214ENST00000577246 KIF27Q86VH2 1401 aa23.61■■□□□ 1.37
COPS3-214ENST00000577246 IGF1RP08069 1367 aa23.59■■□□□ 1.37
COPS3-214ENST00000577246 CUL7Q14999 1698 aa23.58■■□□□ 1.37
COPS3-214ENST00000577246 KDM6BO15054 1643 aa23.55■■□□□ 1.36
COPS3-214ENST00000577246 PTPRGP23470 1445 aa23.52■■□□□ 1.36
COPS3-214ENST00000577246 CARMIL2Q6F5E8 1435 aa23.5■■□□□ 1.35
COPS3-214ENST00000577246 TNIKQ9UKE5 1360 aa23.46■■□□□ 1.35
COPS3-214ENST00000577246 CARMIL1Q5VZK9 1371 aa23.45■■□□□ 1.34
COPS3-214ENST00000577246 ABCC2Q92887 1545 aa23.43■■□□□ 1.34
COPS3-214ENST00000577246 KDM4FA0A1W2PPD8 638 aa23.43■■□□□ 1.34
COPS3-214ENST00000577246 PLB1Q6P1J6 1458 aa23.41■■□□□ 1.34
COPS3-214ENST00000577246 TTBK1Q5TCY1 1321 aaPredicted RBP23.4■■□□□ 1.34
COPS3-214ENST00000577246 TSPOAP1O95153 1857 aa23.39■■□□□ 1.34
COPS3-214ENST00000577246 ASXL2Q76L83 1435 aa23.37■■□□□ 1.33
COPS3-214ENST00000577246 IQGAP2Q13576 1575 aa23.36■■□□□ 1.33
COPS3-214ENST00000577246 UHRF1BP1LA0JNW5 1464 aa23.36■■□□□ 1.33
COPS3-214ENST00000577246 GLI2P10070 1586 aa23.35■■□□□ 1.33
COPS3-214ENST00000577246 UACAQ9BZF9 1416 aa23.33■■□□□ 1.32
COPS3-214ENST00000577246 DISP1Q96F81 1524 aa23.25■■□□□ 1.31
COPS3-214ENST00000577246 TEX14Q8IWB6 1497 aa23.24■■□□□ 1.31
COPS3-214ENST00000577246 KDM5BQ9UGL1 1544 aa23.23■■□□□ 1.31
COPS3-214ENST00000577246 PPRC1Q5VV67 1664 aaKnown RBP23.22■■□□□ 1.31
COPS3-214ENST00000577246 EPRSP07814 1512 aaKnown RBP23.22■■□□□ 1.31
COPS3-214ENST00000577246 ADGRL1O94910 1474 aa23.21■■□□□ 1.31
COPS3-214ENST00000577246 UGGT2Q9NYU1 1516 aa23.21■■□□□ 1.31
COPS3-214ENST00000577246 RAPGEF2Q9Y4G8 1499 aa23.2■■□□□ 1.3
COPS3-214ENST00000577246 MAP3K4Q9Y6R4 1608 aa23.17■■□□□ 1.3
COPS3-214ENST00000577246 KIAA0556O60303 1618 aa23.14■■□□□ 1.29
COPS3-214ENST00000577246 ZCCHC11Q5TAX3 1644 aaKnown RBP23.13■■□□□ 1.29
COPS3-214ENST00000577246 COL17A1Q9UMD9 1497 aaPredicted RBP23.12■■□□□ 1.29
COPS3-214ENST00000577246 WDR7Q9Y4E6 1490 aa23.11■■□□□ 1.29
COPS3-214ENST00000577246 ILDR1Q86SU0 546 aaPredicted RBP23.09■■□□□ 1.29
COPS3-214ENST00000577246 GOLGA3Q08378 1498 aa23.05■■□□□ 1.28
COPS3-214ENST00000577246 MAGI3Q5TCQ9 1506 aa23.01■■□□□ 1.27
COPS3-214ENST00000577246 CD109Q6YHK3 1445 aa23■■□□□ 1.27
COPS3-214ENST00000577246 FAM9AQ8IZU1 332 aaPredicted RBP22.98■■□□□ 1.27
COPS3-214ENST00000577246 HECW2Q9P2P5 1572 aa22.97■■□□□ 1.27
COPS3-214ENST00000577246 CFAP43Q8NDM7 1665 aa22.96■■□□□ 1.27
COPS3-214ENST00000577246 CTTNBP2Q8WZ74 1663 aa22.95■■□□□ 1.26
COPS3-214ENST00000577246 KCNH8Q96L42 1107 aa22.95■■□□□ 1.26
COPS3-214ENST00000577246 ABCA8O94911 1581 aa22.94■■□□□ 1.26
COPS3-214ENST00000577246 PRXQ9BXM0 1461 aa22.85■■□□□ 1.25
COPS3-214ENST00000577246 ARAP3Q8WWN8 1544 aa22.83■■□□□ 1.25
COPS3-214ENST00000577246 PHLDB1Q86UU1 1377 aa22.82■■□□□ 1.24
COPS3-214ENST00000577246 KIF21BO75037 1637 aa22.76■■□□□ 1.23
COPS3-214ENST00000577246 ATP10BO94823 1461 aa22.76■■□□□ 1.23
COPS3-214ENST00000577246 ARID3CA6NKF2 412 aa22.73■■□□□ 1.23
COPS3-214ENST00000577246 ABCA9Q8IUA7 1624 aa22.71■■□□□ 1.23
COPS3-214ENST00000577246 P3H3Q8IVL6 736 aa22.71■■□□□ 1.23
COPS3-214ENST00000577246 NEO1Q92859 1461 aa22.7■■□□□ 1.22
COPS3-214ENST00000577246 PTPRMP28827 1452 aa22.66■■□□□ 1.22
COPS3-214ENST00000577246 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.66■■□□□ 1.22
COPS3-214ENST00000577246 HNRNPUL2Q1KMD3 747 aaKnown RBP22.66■■□□□ 1.22
COPS3-214ENST00000577246 RAPGEF3O95398 923 aa22.65■■□□□ 1.22
COPS3-214ENST00000577246 FBXO41Q8TF61 875 aa22.64■■□□□ 1.21
COPS3-214ENST00000577246 SAMD9Q5K651 1589 aa22.63■■□□□ 1.21
COPS3-214ENST00000577246 RAPGEF6Q8TEU7 1601 aa22.63■■□□□ 1.21
COPS3-214ENST00000577246 ADAMTSL3P82987 1691 aa22.62■■□□□ 1.21
COPS3-214ENST00000577246 ARID4BQ4LE39 1312 aaPredicted RBP22.61■■□□□ 1.21
COPS3-214ENST00000577246 CSRNP3Q8WYN3 585 aa22.6■■□□□ 1.21
COPS3-214ENST00000577246 NUP153P49790 1475 aaKnown RBP22.55■■□□□ 1.2
COPS3-214ENST00000577246 FRMPD1Q5SYB0 1578 aa22.55■■□□□ 1.2
COPS3-214ENST00000577246 BCORL1Q5H9F3 1711 aa22.54■■□□□ 1.2
COPS3-214ENST00000577246 PLEKHD1A6NEE1 506 aa22.54■■□□□ 1.2
COPS3-214ENST00000577246 DENND4BO75064 1496 aaPredicted RBP22.53■■□□□ 1.2
COPS3-214ENST00000577246 PCF11O94913 1555 aaKnown RBP22.52■■□□□ 1.2
COPS3-214ENST00000577246 ARHGEF40Q8TER5 1519 aa22.52■■□□□ 1.19
COPS3-214ENST00000577246 EEA1Q15075 1411 aa22.51■■□□□ 1.19
COPS3-214ENST00000577246 MADDQ8WXG6 1647 aa22.5■■□□□ 1.19
COPS3-214ENST00000577246 CFAP74Q9C0B2 1584 aa22.5■■□□□ 1.19
COPS3-214ENST00000577246 FHOD3Q2V2M9 1422 aa22.48■■□□□ 1.19
COPS3-214ENST00000577246 POGZQ7Z3K3 1410 aa22.48■■□□□ 1.19
COPS3-214ENST00000577246 AKNAQ7Z591 1439 aa22.48■■□□□ 1.19
COPS3-214ENST00000577246 FANCAO15360 1455 aa22.47■■□□□ 1.19
COPS3-214ENST00000577246 LMTK3Q96Q04 1460 aa22.47■■□□□ 1.19
COPS3-214ENST00000577246 RANGAP1P46060 587 aaPredicted RBP22.46■■□□□ 1.19
COPS3-214ENST00000577246 RICTORQ6R327 1708 aa22.42■■□□□ 1.18
COPS3-214ENST00000577246 EFCAB5A4FU69 1503 aa22.41■■□□□ 1.18
COPS3-214ENST00000577246 ZMYM4Q5VZL5 1548 aa22.41■■□□□ 1.18
COPS3-214ENST00000577246 MAGI2Q86UL8 1455 aa22.41■■□□□ 1.18
COPS3-214ENST00000577246 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP22.41■■□□□ 1.186e-8■■■■□ 20.3
COPS3-214ENST00000577246 RIMS1Q86UR5 1692 aaKnown RBP22.4■■□□□ 1.18
COPS3-214ENST00000577246 ZFYVE16Q7Z3T8 1539 aa22.39■■□□□ 1.17
COPS3-214ENST00000577246 TTC37Q6PGP7 1564 aa22.35■■□□□ 1.17
COPS3-214ENST00000577246 YEATS2Q9ULM3 1422 aa22.33■■□□□ 1.17
COPS3-214ENST00000577246 HSPA2P54652 639 aa22.31■■□□□ 1.16
COPS3-214ENST00000577246 PLPPR3Q6T4P5 718 aa22.31■■□□□ 1.16
COPS3-214ENST00000577246 PLCH2O75038 1416 aa22.31■■□□□ 1.16
COPS3-214ENST00000577246 SCAPERQ9BY12 1400 aa22.31■■□□□ 1.16
COPS3-214ENST00000577246 HECW1Q76N89 1606 aa22.28■■□□□ 1.16
COPS3-214ENST00000577246 MLECQ14165 292 aa22.28■■□□□ 1.16
COPS3-214ENST00000577246 CDK13Q14004 1512 aaKnown RBP22.27■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms