RNA–Protein interactions for RNA: ENST00000576601.1

CIITA-211, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 4

Gene CIITA, Length 626 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-211ENST00000576601 RUSC2Q8N2Y8 1516 aa25.32■■□□□ 1.64
CIITA-211ENST00000576601 PRG4Q92954 1404 aaPredicted RBP25.32■■□□□ 1.64
CIITA-211ENST00000576601 ADCY10Q96PN6 1610 aa25.3■■□□□ 1.64
CIITA-211ENST00000576601 KDM6BO15054 1643 aa25.27■■□□□ 1.64
CIITA-211ENST00000576601 TSPOAP1O95153 1857 aa25.26■■□□□ 1.63
CIITA-211ENST00000576601 KDM4FA0A1W2PPD8 638 aa25.24■■□□□ 1.63
CIITA-211ENST00000576601 FAM69CQ0P6D2 419 aa25.2■■□□□ 1.62
CIITA-211ENST00000576601 JPH4Q96JJ6 628 aa25.15■■□□□ 1.62
CIITA-211ENST00000576601 ILDR1Q86SU0 546 aaPredicted RBP25.13■■□□□ 1.61
CIITA-211ENST00000576601 PPRC1Q5VV67 1664 aaKnown RBP25.07■■□□□ 1.6
CIITA-211ENST00000576601 NPM1P06748 294 aaKnown RBP eCLIP25■■□□□ 1.59
CIITA-211ENST00000576601 KIAA0586Q9BVV6 1533 aa24.95■■□□□ 1.58
CIITA-211ENST00000576601 ADGRL1O94910 1474 aa24.94■■□□□ 1.58
CIITA-211ENST00000576601 GLI2P10070 1586 aa24.89■■□□□ 1.58
CIITA-211ENST00000576601 CUL7Q14999 1698 aa24.89■■□□□ 1.58
CIITA-211ENST00000576601 HECW2Q9P2P5 1572 aa24.88■■□□□ 1.57
CIITA-211ENST00000576601 SUPT5HO00267 1087 aaKnown RBP24.86■■□□□ 1.57
CIITA-211ENST00000576601 ABCC2Q92887 1545 aa24.85■■□□□ 1.57
CIITA-211ENST00000576601 MAP3K4Q9Y6R4 1608 aa24.81■■□□□ 1.56
CIITA-211ENST00000576601 COL17A1Q9UMD9 1497 aaPredicted RBP24.81■■□□□ 1.56
CIITA-211ENST00000576601 ASXL2Q76L83 1435 aa24.8■■□□□ 1.56
CIITA-211ENST00000576601 PTPRGP23470 1445 aa24.78■■□□□ 1.56
CIITA-211ENST00000576601 PLB1Q6P1J6 1458 aa24.77■■□□□ 1.56
CIITA-211ENST00000576601 IGF1RP08069 1367 aa24.76■■□□□ 1.55
CIITA-211ENST00000576601 UHRF1BP1LA0JNW5 1464 aa24.72■■□□□ 1.55
CIITA-211ENST00000576601 TNIKQ9UKE5 1360 aa24.69■■□□□ 1.54
CIITA-211ENST00000576601 IQGAP2Q13576 1575 aa24.69■■□□□ 1.54
CIITA-211ENST00000576601 EPRSP07814 1512 aaKnown RBP24.69■■□□□ 1.54
CIITA-211ENST00000576601 ZCCHC11Q5TAX3 1644 aaKnown RBP24.67■■□□□ 1.54
CIITA-211ENST00000576601 KIF27Q86VH2 1401 aa24.66■■□□□ 1.54
CIITA-211ENST00000576601 KDM5BQ9UGL1 1544 aa24.64■■□□□ 1.53
CIITA-211ENST00000576601 CARMIL2Q6F5E8 1435 aa24.63■■□□□ 1.53
CIITA-211ENST00000576601 DISP1Q96F81 1524 aa24.63■■□□□ 1.53
CIITA-211ENST00000576601 TTBK1Q5TCY1 1321 aaPredicted RBP24.61■■□□□ 1.53
CIITA-211ENST00000576601 UACAQ9BZF9 1416 aa24.61■■□□□ 1.53
CIITA-211ENST00000576601 TEX14Q8IWB6 1497 aa24.6■■□□□ 1.53
CIITA-211ENST00000576601 CARMIL1Q5VZK9 1371 aa24.54■■□□□ 1.52
CIITA-211ENST00000576601 KIAA0556O60303 1618 aa24.51■■□□□ 1.51
CIITA-211ENST00000576601 KIF21BO75037 1637 aa24.5■■□□□ 1.51
CIITA-211ENST00000576601 UGGT2Q9NYU1 1516 aa24.5■■□□□ 1.51
CIITA-211ENST00000576601 CFAP43Q8NDM7 1665 aa24.49■■□□□ 1.51
CIITA-211ENST00000576601 WDR7Q9Y4E6 1490 aa24.47■■□□□ 1.51
CIITA-211ENST00000576601 MAGI3Q5TCQ9 1506 aa24.41■■□□□ 1.5
CIITA-211ENST00000576601 CTTNBP2Q8WZ74 1663 aa24.35■■□□□ 1.49
CIITA-211ENST00000576601 FBXO41Q8TF61 875 aa24.35■■□□□ 1.49
CIITA-211ENST00000576601 ADAMTSL3P82987 1691 aa24.34■■□□□ 1.49
CIITA-211ENST00000576601 CD109Q6YHK3 1445 aa24.32■■□□□ 1.48
CIITA-211ENST00000576601 ABCA8O94911 1581 aa24.32■■□□□ 1.48
CIITA-211ENST00000576601 RAPGEF2Q9Y4G8 1499 aa24.29■■□□□ 1.48
CIITA-211ENST00000576601 ARAP3Q8WWN8 1544 aa24.25■■□□□ 1.47
CIITA-211ENST00000576601 PTPRMP28827 1452 aa24.24■■□□□ 1.47
CIITA-211ENST00000576601 BCORL1Q5H9F3 1711 aa24.21■■□□□ 1.47
CIITA-211ENST00000576601 MADDQ8WXG6 1647 aa24.18■■□□□ 1.46
CIITA-211ENST00000576601 PCF11O94913 1555 aaKnown RBP24.18■■□□□ 1.46
CIITA-211ENST00000576601 ABCA9Q8IUA7 1624 aa24.16■■□□□ 1.46
CIITA-211ENST00000576601 FRMPD1Q5SYB0 1578 aa24.16■■□□□ 1.46
CIITA-211ENST00000576601 LMTK3Q96Q04 1460 aa24.15■■□□□ 1.46
CIITA-211ENST00000576601 KCNH8Q96L42 1107 aa24.13■■□□□ 1.45
CIITA-211ENST00000576601 GOLGA3Q08378 1498 aa24.12■■□□□ 1.45
CIITA-211ENST00000576601 RIMS1Q86UR5 1692 aaKnown RBP24.07■■□□□ 1.44
CIITA-211ENST00000576601 ATP10BO94823 1461 aa24.02■■□□□ 1.44
CIITA-211ENST00000576601 ARHGEF40Q8TER5 1519 aa24.02■■□□□ 1.44
CIITA-211ENST00000576601 RICTORQ6R327 1708 aa24.01■■□□□ 1.43
CIITA-211ENST00000576601 SIGLEC1Q9BZZ2 1709 aa24■■□□□ 1.43
CIITA-211ENST00000576601 NEO1Q92859 1461 aa24■■□□□ 1.43
CIITA-211ENST00000576601 PHLDB1Q86UU1 1377 aa23.99■■□□□ 1.43
CIITA-211ENST00000576601 RAPGEF3O95398 923 aa23.97■■□□□ 1.43
CIITA-211ENST00000576601 PRXQ9BXM0 1461 aa23.93■■□□□ 1.42
CIITA-211ENST00000576601 RAPGEF6Q8TEU7 1601 aa23.92■■□□□ 1.42
CIITA-211ENST00000576601 SAMD9Q5K651 1589 aa23.91■■□□□ 1.42
CIITA-211ENST00000576601 ARID3CA6NKF2 412 aa23.91■■□□□ 1.42
CIITA-211ENST00000576601 FER1L4A9Z1Z3 1794 aa23.86■■□□□ 1.41
CIITA-211ENST00000576601 HSPA2P54652 639 aa23.85■■□□□ 1.41
CIITA-211ENST00000576601 ZMYM4Q5VZL5 1548 aa23.84■■□□□ 1.41
CIITA-211ENST00000576601 ARID4BQ4LE39 1312 aaPredicted RBP23.83■■□□□ 1.4
CIITA-211ENST00000576601 TTC37Q6PGP7 1564 aa23.82■■□□□ 1.4
CIITA-211ENST00000576601 NUP153P49790 1475 aaKnown RBP23.81■■□□□ 1.4
CIITA-211ENST00000576601 CFAP74Q9C0B2 1584 aa23.8■■□□□ 1.4
CIITA-211ENST00000576601 FHOD3Q2V2M9 1422 aa23.79■■□□□ 1.4
CIITA-211ENST00000576601 DENND4BO75064 1496 aaPredicted RBP23.78■■□□□ 1.4
CIITA-211ENST00000576601 FANCAO15360 1455 aa23.77■■□□□ 1.4
CIITA-211ENST00000576601 CERKQ8TCT0 537 aa23.77■■□□□ 1.4
CIITA-211ENST00000576601 PREX1Q8TCU6 1659 aa23.76■■□□□ 1.39
CIITA-211ENST00000576601 P3H3Q8IVL6 736 aa23.76■■□□□ 1.39
CIITA-211ENST00000576601 ZFYVE16Q7Z3T8 1539 aa23.75■■□□□ 1.39
CIITA-211ENST00000576601 STRCQ7RTU9 1775 aa23.75■■□□□ 1.39
CIITA-211ENST00000576601 ILDR2Q71H61 639 aa23.74■■□□□ 1.39
CIITA-211ENST00000576601 YEATS2Q9ULM3 1422 aa23.74■■□□□ 1.39
CIITA-211ENST00000576601 EFCAB5A4FU69 1503 aa23.74■■□□□ 1.39
CIITA-211ENST00000576601 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.73■■□□□ 1.39
CIITA-211ENST00000576601 AKNAQ7Z591 1439 aa23.72■■□□□ 1.39
CIITA-211ENST00000576601 HECW1Q76N89 1606 aa23.7■■□□□ 1.39
CIITA-211ENST00000576601 POGZQ7Z3K3 1410 aa23.68■■□□□ 1.38
CIITA-211ENST00000576601 ARHGEF12Q9NZN5 1544 aa23.68■■□□□ 1.38
CIITA-211ENST00000576601 DISP3Q9P2K9 1392 aa23.65■■□□□ 1.38
CIITA-211ENST00000576601 MAGI2Q86UL8 1455 aa23.65■■□□□ 1.38
CIITA-211ENST00000576601 SPATA31D1Q6ZQQ2 1576 aa23.65■■□□□ 1.38
CIITA-211ENST00000576601 SOCS7O14512 581 aa23.64■■□□□ 1.37
CIITA-211ENST00000576601 PLPPR3Q6T4P5 718 aa23.64■■□□□ 1.37
CIITA-211ENST00000576601 SETD1BQ9UPS6 1966 aaKnown RBP23.58■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms