RNA–Protein interactions for RNA: ENST00000572270.1

CCDC40-208, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 460 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-208ENST00000572270 PRG4Q92954 1404 aaPredicted RBP24.16■■□□□ 1.46
CCDC40-208ENST00000572270 MAPKBP1O60336 1514 aa24.15■■□□□ 1.46
CCDC40-208ENST00000572270 WRNQ14191 1432 aaPredicted RBP eCLIP24.09■■□□□ 1.45
CCDC40-208ENST00000572270 TSPOAP1O95153 1857 aa24.07■■□□□ 1.44
CCDC40-208ENST00000572270 JPH4Q96JJ6 628 aa24.05■■□□□ 1.44
CCDC40-208ENST00000572270 ERICH3Q5RHP9 1530 aa24.04■■□□□ 1.44
CCDC40-208ENST00000572270 ADCY10Q96PN6 1610 aa24.02■■□□□ 1.44
CCDC40-208ENST00000572270 RUSC2Q8N2Y8 1516 aa23.96■■□□□ 1.43
CCDC40-208ENST00000572270 ADGRL1O94910 1474 aa23.93■■□□□ 1.42
CCDC40-208ENST00000572270 BIVM-ERCC5R4GMW8 1640 aa23.92■■□□□ 1.42
CCDC40-208ENST00000572270 TOP2BQ02880 1626 aa23.9■■□□□ 1.42
CCDC40-208ENST00000572270 HECW2Q9P2P5 1572 aa23.89■■□□□ 1.41
CCDC40-208ENST00000572270 PPRC1Q5VV67 1664 aaKnown RBP23.76■■□□□ 1.39
CCDC40-208ENST00000572270 KIAA0586Q9BVV6 1533 aa23.72■■□□□ 1.39
CCDC40-208ENST00000572270 GLI2P10070 1586 aa23.71■■□□□ 1.39
CCDC40-208ENST00000572270 PLB1Q6P1J6 1458 aa23.68■■□□□ 1.38
CCDC40-208ENST00000572270 PTPRGP23470 1445 aa23.67■■□□□ 1.38
CCDC40-208ENST00000572270 ASXL2Q76L83 1435 aa23.67■■□□□ 1.38
CCDC40-208ENST00000572270 ABCC2Q92887 1545 aa23.67■■□□□ 1.38
CCDC40-208ENST00000572270 FBXO41Q8TF61 875 aa23.65■■□□□ 1.38
CCDC40-208ENST00000572270 TTBK1Q5TCY1 1321 aaPredicted RBP23.63■■□□□ 1.37
CCDC40-208ENST00000572270 CUL7Q14999 1698 aa23.61■■□□□ 1.37
CCDC40-208ENST00000572270 TEX14Q8IWB6 1497 aa23.61■■□□□ 1.37
CCDC40-208ENST00000572270 COL17A1Q9UMD9 1497 aaPredicted RBP23.6■■□□□ 1.37
CCDC40-208ENST00000572270 MAP3K4Q9Y6R4 1608 aa23.57■■□□□ 1.36
CCDC40-208ENST00000572270 TNIKQ9UKE5 1360 aa23.56■■□□□ 1.36
CCDC40-208ENST00000572270 CARMIL2Q6F5E8 1435 aa23.56■■□□□ 1.36
CCDC40-208ENST00000572270 EPRSP07814 1512 aaKnown RBP23.53■■□□□ 1.36
CCDC40-208ENST00000572270 UHRF1BP1LA0JNW5 1464 aa23.52■■□□□ 1.36
CCDC40-208ENST00000572270 UACAQ9BZF9 1416 aa23.47■■□□□ 1.35
CCDC40-208ENST00000572270 IGF1RP08069 1367 aa23.45■■□□□ 1.34
CCDC40-208ENST00000572270 SUPT5HO00267 1087 aaKnown RBP23.43■■□□□ 1.34
CCDC40-208ENST00000572270 KIF27Q86VH2 1401 aa23.42■■□□□ 1.34
CCDC40-208ENST00000572270 KDM5BQ9UGL1 1544 aa23.42■■□□□ 1.34
CCDC40-208ENST00000572270 IQGAP2Q13576 1575 aa23.41■■□□□ 1.34
CCDC40-208ENST00000572270 ZCCHC11Q5TAX3 1644 aaKnown RBP23.41■■□□□ 1.34
CCDC40-208ENST00000572270 KIF21BO75037 1637 aa23.34■■□□□ 1.33
CCDC40-208ENST00000572270 CARMIL1Q5VZK9 1371 aa23.32■■□□□ 1.32
CCDC40-208ENST00000572270 LMTK3Q96Q04 1460 aa23.31■■□□□ 1.32
CCDC40-208ENST00000572270 WDR7Q9Y4E6 1490 aa23.31■■□□□ 1.32
CCDC40-208ENST00000572270 DISP1Q96F81 1524 aa23.3■■□□□ 1.32
CCDC40-208ENST00000572270 CFAP43Q8NDM7 1665 aa23.28■■□□□ 1.32
CCDC40-208ENST00000572270 MAGI3Q5TCQ9 1506 aa23.28■■□□□ 1.32
CCDC40-208ENST00000572270 CD109Q6YHK3 1445 aa23.26■■□□□ 1.31
CCDC40-208ENST00000572270 PTPRMP28827 1452 aa23.22■■□□□ 1.31
CCDC40-208ENST00000572270 KIAA0556O60303 1618 aa23.2■■□□□ 1.3
CCDC40-208ENST00000572270 UGGT2Q9NYU1 1516 aa23.19■■□□□ 1.3
CCDC40-208ENST00000572270 ADAMTSL3P82987 1691 aa23.17■■□□□ 1.3
CCDC40-208ENST00000572270 PCF11O94913 1555 aaKnown RBP23.17■■□□□ 1.3
CCDC40-208ENST00000572270 KCNH8Q96L42 1107 aa23.15■■□□□ 1.3
CCDC40-208ENST00000572270 ARAP3Q8WWN8 1544 aa23.11■■□□□ 1.29
CCDC40-208ENST00000572270 BCORL1Q5H9F3 1711 aa23.06■■□□□ 1.28
CCDC40-208ENST00000572270 MADDQ8WXG6 1647 aa23.05■■□□□ 1.28
CCDC40-208ENST00000572270 RAPGEF2Q9Y4G8 1499 aa23.04■■□□□ 1.28
CCDC40-208ENST00000572270 SOCS7O14512 581 aa23.03■■□□□ 1.28
CCDC40-208ENST00000572270 DISP3Q9P2K9 1392 aa23.01■■□□□ 1.27
CCDC40-208ENST00000572270 ABCA8O94911 1581 aa23.01■■□□□ 1.27
CCDC40-208ENST00000572270 ARID4BQ4LE39 1312 aaPredicted RBP23■■□□□ 1.27
CCDC40-208ENST00000572270 PHLDB1Q86UU1 1377 aa23■■□□□ 1.27
CCDC40-208ENST00000572270 CERKQ8TCT0 537 aa22.98■■□□□ 1.27
CCDC40-208ENST00000572270 GOLGA3Q08378 1498 aa22.98■■□□□ 1.27
CCDC40-208ENST00000572270 ILDR2Q71H61 639 aa22.97■■□□□ 1.27
CCDC40-208ENST00000572270 RIMS1Q86UR5 1692 aaKnown RBP22.97■■□□□ 1.27
CCDC40-208ENST00000572270 CTTNBP2Q8WZ74 1663 aa22.95■■□□□ 1.26
CCDC40-208ENST00000572270 RAPGEF3O95398 923 aa22.92■■□□□ 1.26
CCDC40-208ENST00000572270 HSPA2P54652 639 aa22.92■■□□□ 1.26
CCDC40-208ENST00000572270 ABCA9Q8IUA7 1624 aa22.91■■□□□ 1.26
CCDC40-208ENST00000572270 NEO1Q92859 1461 aa22.89■■□□□ 1.25
CCDC40-208ENST00000572270 FRMPD1Q5SYB0 1578 aa22.87■■□□□ 1.25
CCDC40-208ENST00000572270 PLPPR3Q6T4P5 718 aa22.85■■□□□ 1.25
CCDC40-208ENST00000572270 FAM9AQ8IZU1 332 aaPredicted RBP22.85■■□□□ 1.25
CCDC40-208ENST00000572270 ARHGEF40Q8TER5 1519 aa22.85■■□□□ 1.25
CCDC40-208ENST00000572270 ARID3CA6NKF2 412 aa22.83■■□□□ 1.25
CCDC40-208ENST00000572270 SPATA31D1Q6ZQQ2 1576 aa22.82■■□□□ 1.24
CCDC40-208ENST00000572270 POGZQ7Z3K3 1410 aa22.8■■□□□ 1.24
CCDC40-208ENST00000572270 ATP10BO94823 1461 aa22.79■■□□□ 1.24
CCDC40-208ENST00000572270 FANCAO15360 1455 aa22.78■■□□□ 1.24
CCDC40-208ENST00000572270 RICTORQ6R327 1708 aa22.73■■□□□ 1.23
CCDC40-208ENST00000572270 DENND4BO75064 1496 aaPredicted RBP22.73■■□□□ 1.23
CCDC40-208ENST00000572270 AKNAQ7Z591 1439 aa22.72■■□□□ 1.23
CCDC40-208ENST00000572270 FER1L4A9Z1Z3 1794 aa22.71■■□□□ 1.23
CCDC40-208ENST00000572270 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.68■■□□□ 1.22
CCDC40-208ENST00000572270 HNRNPUL2Q1KMD3 747 aaKnown RBP22.68■■□□□ 1.22
CCDC40-208ENST00000572270 PREX1Q8TCU6 1659 aa22.68■■□□□ 1.22
CCDC40-208ENST00000572270 TTC37Q6PGP7 1564 aa22.67■■□□□ 1.22
CCDC40-208ENST00000572270 CFAP74Q9C0B2 1584 aa22.67■■□□□ 1.22
CCDC40-208ENST00000572270 EFCAB5A4FU69 1503 aa22.67■■□□□ 1.22
CCDC40-208ENST00000572270 DMRT2Q9Y5R5 561 aa22.66■■□□□ 1.22
CCDC40-208ENST00000572270 ZFYVE16Q7Z3T8 1539 aa22.66■■□□□ 1.22
CCDC40-208ENST00000572270 FHOD3Q2V2M9 1422 aa22.65■■□□□ 1.22
CCDC40-208ENST00000572270 YEATS2Q9ULM3 1422 aa22.65■■□□□ 1.22
CCDC40-208ENST00000572270 RAPGEF6Q8TEU7 1601 aa22.64■■□□□ 1.22
CCDC40-208ENST00000572270 ZMYM4Q5VZL5 1548 aa22.64■■□□□ 1.21
CCDC40-208ENST00000572270 MLECQ14165 292 aa22.64■■□□□ 1.21
CCDC40-208ENST00000572270 P3H3Q8IVL6 736 aa22.64■■□□□ 1.21
CCDC40-208ENST00000572270 SIGLEC1Q9BZZ2 1709 aa22.63■■□□□ 1.21
CCDC40-208ENST00000572270 STRCQ7RTU9 1775 aa22.58■■□□□ 1.21
CCDC40-208ENST00000572270 MAGI2Q86UL8 1455 aa22.58■■□□□ 1.2
CCDC40-208ENST00000572270 PRXQ9BXM0 1461 aa22.54■■□□□ 1.2
CCDC40-208ENST00000572270 ARHGEF12Q9NZN5 1544 aa22.53■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms