RNA–Protein interactions for RNA: ENST00000569924.1

CNOT1-221, Transcript of CCR4-NOT transcription complex subunit 1, humanhuman

TSL 2

Gene CNOT1, Length 493 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT1-221ENST00000569924 TRIM41Q8WV44 630 aa6.07□□□□□ -1.44
CNOT1-221ENST00000569924 ZNF692Q9BU19 519 aaPredicted RBP6.06□□□□□ -1.44
CNOT1-221ENST00000569924 CAPN15O75808 1086 aa6.04□□□□□ -1.44
CNOT1-221ENST00000569924 ZBTB47Q9UFB7 747 aaPredicted RBP6.04□□□□□ -1.44
CNOT1-221ENST00000569924 SHROOM4Q9ULL8 1493 aa6.03□□□□□ -1.44
CNOT1-221ENST00000569924 DCAF1Q9Y4B6 1507 aa6.02□□□□□ -1.45
CNOT1-221ENST00000569924 PLEKHG5O94827 1062 aa6.01□□□□□ -1.45
CNOT1-221ENST00000569924 HOMEZQ8IX15 550 aa6.01□□□□□ -1.45
CNOT1-221ENST00000569924 SSUH2Q9Y2M2 353 aa6.01□□□□□ -1.45
CNOT1-221ENST00000569924 ZCCHC6Q5VYS8 1495 aaKnown RBP6.01□□□□□ -1.45
CNOT1-221ENST00000569924 SPDYE2BA6NHP3 402 aa6□□□□□ -1.45
CNOT1-221ENST00000569924 GTPBP6O43824 516 aaPredicted RBP6□□□□□ -1.45
CNOT1-221ENST00000569924 SPDYE6P0CI01 402 aa6□□□□□ -1.45
CNOT1-221ENST00000569924 SPDYE2Q495Y8 402 aa6□□□□□ -1.45
CNOT1-221ENST00000569924 NKX1-1Q15270 411 aaPredicted RBP5.99□□□□□ -1.45
CNOT1-221ENST00000569924 POTEHQ6S545 545 aa5.99□□□□□ -1.45
CNOT1-221ENST00000569924 C14orf37Q86TY3 774 aa5.99□□□□□ -1.45
CNOT1-221ENST00000569924 RNF39Q9H2S5 420 aa5.99□□□□□ -1.45
CNOT1-221ENST00000569924 RNF25Q96BH1 459 aaPredicted RBP5.97□□□□□ -1.45
CNOT1-221ENST00000569924 ABCB7O75027 752 aa5.96□□□□□ -1.46
CNOT1-221ENST00000569924 GSE1Q14687 1217 aa5.96□□□□□ -1.46
CNOT1-221ENST00000569924 CC2D2AQ9P2K1 1620 aa5.96□□□□□ -1.46
CNOT1-221ENST00000569924 CECR2Q9BXF3 1484 aa5.95□□□□□ -1.46
CNOT1-221ENST00000569924 EIF4G1Q04637 1599 aaKnown RBP5.93□□□□□ -1.46
CNOT1-221ENST00000569924 SCRIBQ14160 1630 aa5.93□□□□□ -1.46
CNOT1-221ENST00000569924 RIOK3O14730 519 aaKnown RBP5.93□□□□□ -1.46
CNOT1-221ENST00000569924 ILDR1Q86SU0 546 aaPredicted RBP5.93□□□□□ -1.46
CNOT1-221ENST00000569924 OSCARQ8IYS5 282 aa5.93□□□□□ -1.46
CNOT1-221ENST00000569924 P3H3Q8IVL6 736 aa5.91□□□□□ -1.46
CNOT1-221ENST00000569924 RYDENQ9NUL5 291 aaKnown RBP5.91□□□□□ -1.46
CNOT1-221ENST00000569924 STK25O00506 426 aa5.9□□□□□ -1.46
CNOT1-221ENST00000569924 C1QBPQ07021 282 aaKnown RBP5.9□□□□□ -1.46
CNOT1-221ENST00000569924 VGFO15240 615 aaPredicted RBP5.89□□□□□ -1.47
CNOT1-221ENST00000569924 DHX30Q7L2E3 1194 aaKnown RBP eCLIP5.89□□□□□ -1.47
CNOT1-221ENST00000569924 NUBP1P53384 320 aa5.88□□□□□ -1.47
CNOT1-221ENST00000569924 DCAF8Q5TAQ9 597 aa5.87□□□□□ -1.47
CNOT1-221ENST00000569924 LMOD2Q6P5Q4 547 aa5.87□□□□□ -1.47
CNOT1-221ENST00000569924 SGIP1Q9BQI5 828 aa5.87□□□□□ -1.47
CNOT1-221ENST00000569924 CHRM1P11229 460 aaPredicted RBP5.85□□□□□ -1.47
CNOT1-221ENST00000569924 BRPF1P55201 1214 aaPredicted RBP5.85□□□□□ -1.47
CNOT1-221ENST00000569924 DSG3P32926 999 aa5.83□□□□□ -1.48
CNOT1-221ENST00000569924 BCL11BQ9C0K0 894 aaPredicted RBP5.83□□□□□ -1.48
CNOT1-221ENST00000569924 WDR70Q9NW82 654 aa5.83□□□□□ -1.48
CNOT1-221ENST00000569924 STK24Q9Y6E0 443 aa5.83□□□□□ -1.48
CNOT1-221ENST00000569924 KCNV2Q8TDN2 545 aa5.82□□□□□ -1.48
CNOT1-221ENST00000569924 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP5.81□□□□□ -1.48
CNOT1-221ENST00000569924 SUPT5HO00267 1087 aaKnown RBP5.81□□□□□ -1.48
CNOT1-221ENST00000569924 FAM212AQ96EL1 285 aa5.81□□□□□ -1.48
CNOT1-221ENST00000569924 ZFP91Q96JP5 570 aaPredicted RBP5.81□□□□□ -1.48
CNOT1-221ENST00000569924 NEUROD2Q15784 382 aa5.78□□□□□ -1.48
CNOT1-221ENST00000569924 ZC3H15Q8WU90 426 aaKnown RBP5.78□□□□□ -1.48
CNOT1-221ENST00000569924 CADPS2Q86UW7 1296 aa5.77□□□□□ -1.49
CNOT1-221ENST00000569924 ARHGEF1Q92888 912 aaKnown RBP5.75□□□□□ -1.49
CNOT1-221ENST00000569924 SLC24A3Q9HC58 644 aa5.74□□□□□ -1.49
CNOT1-221ENST00000569924 NCAPD3P42695 1498 aa5.74□□□□□ -1.49
CNOT1-221ENST00000569924 CUX2O14529 1486 aa5.73□□□□□ -1.49
CNOT1-221ENST00000569924 MNX1P50219 401 aaPredicted RBP5.73□□□□□ -1.49
CNOT1-221ENST00000569924 PODXL2Q9NZ53 605 aa5.73□□□□□ -1.49
CNOT1-221ENST00000569924 RASEFQ8IZ41 740 aa5.72□□□□□ -1.49
CNOT1-221ENST00000569924 TESPA1A2RU30 521 aaPredicted RBP5.71□□□□□ -1.5
CNOT1-221ENST00000569924 PYGBP11216 843 aa5.71□□□□□ -1.5
CNOT1-221ENST00000569924 CREBZFQ9NS37 354 aa5.71□□□□□ -1.5
CNOT1-221ENST00000569924 ZMYND10O75800 440 aa5.7□□□□□ -1.5
CNOT1-221ENST00000569924 ATAD2BQ9ULI0 1458 aa5.7□□□□□ -1.5
CNOT1-221ENST00000569924 HMGXB3Q12766 1538 aa5.69□□□□□ -1.5
CNOT1-221ENST00000569924 SMARCA2P51531 1590 aa5.69□□□□□ -1.5
CNOT1-221ENST00000569924 E2F4Q16254 413 aa5.69□□□□□ -1.5
CNOT1-221ENST00000569924 SPDYE1Q8NFV5 336 aaPredicted RBP5.69□□□□□ -1.5
CNOT1-221ENST00000569924 ERCC6Q03468 1493 aa5.69□□□□□ -1.5
CNOT1-221ENST00000569924 SEMA3EO15041 775 aa5.68□□□□□ -1.5
CNOT1-221ENST00000569924 RANGAP1P46060 587 aaPredicted RBP5.68□□□□□ -1.5
CNOT1-221ENST00000569924 ZMYND15Q9H091 742 aa5.68□□□□□ -1.5
CNOT1-221ENST00000569924 SMARCA4P51532 1647 aa5.67□□□□□ -1.5
CNOT1-221ENST00000569924 PRR29P0C7W0 189 aa5.67□□□□□ -1.5
CNOT1-221ENST00000569924 UBTFP17480 764 aaKnown RBP5.67□□□□□ -1.5
CNOT1-221ENST00000569924 SMYD5Q6GMV2 418 aa5.66□□□□□ -1.5
CNOT1-221ENST00000569924 ZNF467Q7Z7K2 595 aaPredicted RBP5.66□□□□□ -1.5
CNOT1-221ENST00000569924 BARGINQ6ZT62 677 aa5.65□□□□□ -1.5
CNOT1-221ENST00000569924 MFRPQ9BY79 579 aa5.65□□□□□ -1.5
CNOT1-221ENST00000569924 PEG3Q9GZU2 1588 aa5.64□□□□□ -1.51
CNOT1-221ENST00000569924 BAZ1AQ9NRL2 1556 aaPredicted RBP5.64□□□□□ -1.51
CNOT1-221ENST00000569924 PDAP1Q13442 181 aaKnown RBP5.64□□□□□ -1.51
CNOT1-221ENST00000569924 RSPH6AQ9H0K4 717 aa5.64□□□□□ -1.51
CNOT1-221ENST00000569924 BAZ1BQ9UIG0 1483 aaKnown RBP5.64□□□□□ -1.51
CNOT1-221ENST00000569924 NESP48681 1621 aa5.63□□□□□ -1.51
CNOT1-221ENST00000569924 TRIM26Q12899 539 aaPredicted RBP5.63□□□□□ -1.51
CNOT1-221ENST00000569924 AK7Q96M32 723 aa5.62□□□□□ -1.51
CNOT1-221ENST00000569924 CLEC11AQ9Y240 323 aa5.62□□□□□ -1.51
CNOT1-221ENST00000569924 THOC2Q8NI27 1593 aaKnown RBP5.61□□□□□ -1.51
CNOT1-221ENST00000569924 LAMC3Q9Y6N6 1575 aa5.61□□□□□ -1.51
CNOT1-221ENST00000569924 PPP1R37O75864 691 aa5.6□□□□□ -1.51
CNOT1-221ENST00000569924 ARIH1Q9Y4X5 557 aaPredicted RBP5.6□□□□□ -1.51
CNOT1-221ENST00000569924 HRCP23327 699 aa5.59□□□□□ -1.51
CNOT1-221ENST00000569924 IL27Q8NEV9 243 aa5.59□□□□□ -1.51
CNOT1-221ENST00000569924 AKT1S1Q96B36 256 aa5.59□□□□□ -1.51
CNOT1-221ENST00000569924 GPBP1L1Q9HC44 474 aaPredicted RBP5.59□□□□□ -1.51
CNOT1-221ENST00000569924 PDS5BQ9NTI5 1447 aa5.58□□□□□ -1.52
CNOT1-221ENST00000569924 PSEN1P49768 467 aa5.58□□□□□ -1.52
CNOT1-221ENST00000569924 NLRP6P59044 892 aa5.58□□□□□ -1.52
CNOT1-221ENST00000569924 PCDHB8Q9UN66 801 aa5.58□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms