RNA–Protein interactions for RNA: ENST00000569715.5

PDXDC1-216, Transcript of pyridoxal dependent decarboxylase domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene PDXDC1, Length 3,775 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDXDC1-216ENST00000569715 VPS8Q8N3P4 1428 aa17.21■□□□□ 0.35
PDXDC1-216ENST00000569715 PCGF6Q9BYE7 350 aa17.17■□□□□ 0.34
PDXDC1-216ENST00000569715 MAGI1Q96QZ7 1491 aaPredicted RBP17.14■□□□□ 0.33
PDXDC1-216ENST00000569715 TTBK1Q5TCY1 1321 aaPredicted RBP17.11■□□□□ 0.33
PDXDC1-216ENST00000569715 GRIN2AQ12879 1464 aa17.11■□□□□ 0.33
PDXDC1-216ENST00000569715 TRIM26Q12899 539 aaPredicted RBP17.11■□□□□ 0.33
PDXDC1-216ENST00000569715 P3H3Q8IVL6 736 aa17.09■□□□□ 0.33
PDXDC1-216ENST00000569715 SYNJ2O15056 1496 aa17.09■□□□□ 0.33
PDXDC1-216ENST00000569715 EFCAB5A4FU69 1503 aa17.09■□□□□ 0.33
PDXDC1-216ENST00000569715 FHOD3Q2V2M9 1422 aa17.08■□□□□ 0.32
PDXDC1-216ENST00000569715 IQGAP2Q13576 1575 aa17.07■□□□□ 0.32
PDXDC1-216ENST00000569715 SAMD9Q5K651 1589 aa17.07■□□□□ 0.32
PDXDC1-216ENST00000569715 CEP170Q5SW79 1584 aa17.04■□□□□ 0.32
PDXDC1-216ENST00000569715 CHMP7Q8WUX9 453 aaPredicted RBP17.04■□□□□ 0.32
PDXDC1-216ENST00000569715 FBLN2P98095 1184 aa17.04■□□□□ 0.32
PDXDC1-216ENST00000569715 PCF11O94913 1555 aaKnown RBP17.01■□□□□ 0.31
PDXDC1-216ENST00000569715 KIAA0586Q9BVV6 1533 aa17■□□□□ 0.31
PDXDC1-216ENST00000569715 APLP2Q06481 763 aa16.98■□□□□ 0.31
PDXDC1-216ENST00000569715 CHD1O14646 1710 aa16.98■□□□□ 0.31
PDXDC1-216ENST00000569715 NUP160Q12769 1436 aa16.97■□□□□ 0.31
PDXDC1-216ENST00000569715 UGGT2Q9NYU1 1516 aa16.97■□□□□ 0.31
PDXDC1-216ENST00000569715 KANK4Q5T7N3 995 aaPredicted RBP16.93■□□□□ 0.3
PDXDC1-216ENST00000569715 FMN1Q68DA7 1419 aa16.92■□□□□ 0.3
PDXDC1-216ENST00000569715 DISP1Q96F81 1524 aa16.92■□□□□ 0.3
PDXDC1-216ENST00000569715 TIAM1Q13009 1591 aa16.92■□□□□ 0.3
PDXDC1-216ENST00000569715 FYCO1Q9BQS8 1478 aa16.91■□□□□ 0.3
PDXDC1-216ENST00000569715 KIAA0556O60303 1618 aa16.91■□□□□ 0.3
PDXDC1-216ENST00000569715 CASKIN1Q8WXD9 1431 aa16.91■□□□□ 0.3
PDXDC1-216ENST00000569715 CFAP43Q8NDM7 1665 aa16.9■□□□□ 0.3
PDXDC1-216ENST00000569715 LRRIQ1Q96JM4 1722 aa16.89■□□□□ 0.29
PDXDC1-216ENST00000569715 ATP1B4Q9UN42 357 aaPredicted RBP16.88■□□□□ 0.29
PDXDC1-216ENST00000569715 MAP3K1Q13233 1512 aa16.87■□□□□ 0.29
PDXDC1-216ENST00000569715 JPH4Q96JJ6 628 aa16.83■□□□□ 0.28
PDXDC1-216ENST00000569715 LRRC9Q6ZRR7 1453 aa16.82■□□□□ 0.28
PDXDC1-216ENST00000569715 HECW1Q76N89 1606 aa16.79■□□□□ 0.28
PDXDC1-216ENST00000569715 CARMIL2Q6F5E8 1435 aa16.76■□□□□ 0.27
PDXDC1-216ENST00000569715 SHROOM2Q13796 1616 aa16.76■□□□□ 0.27
PDXDC1-216ENST00000569715 PRG4Q92954 1404 aaPredicted RBP16.75■□□□□ 0.27
PDXDC1-216ENST00000569715 RAPGEF6Q8TEU7 1601 aa16.74■□□□□ 0.27
PDXDC1-216ENST00000569715 CLASP1Q7Z460 1538 aa16.74■□□□□ 0.27
PDXDC1-216ENST00000569715 CDK13Q14004 1512 aaKnown RBP16.74■□□□□ 0.27
PDXDC1-216ENST00000569715 EPRSP07814 1512 aaKnown RBP16.73■□□□□ 0.27
PDXDC1-216ENST00000569715 ARID3CA6NKF2 412 aa16.73■□□□□ 0.27
PDXDC1-216ENST00000569715 PLB1Q6P1J6 1458 aa16.72■□□□□ 0.27
PDXDC1-216ENST00000569715 MAGI3Q5TCQ9 1506 aa16.72■□□□□ 0.27
PDXDC1-216ENST00000569715 CCDC18Q5T9S5 1454 aa16.72■□□□□ 0.27
PDXDC1-216ENST00000569715 ERCC6L2Q5T890 1561 aa16.71■□□□□ 0.27
PDXDC1-216ENST00000569715 NUP153P49790 1475 aaKnown RBP16.71■□□□□ 0.27
PDXDC1-216ENST00000569715 PHLDB1Q86UU1 1377 aa16.7■□□□□ 0.26
PDXDC1-216ENST00000569715 RRBP1Q9P2E9 1410 aaKnown RBP16.69■□□□□ 0.26
PDXDC1-216ENST00000569715 MTUS2Q5JR59 1369 aa16.69■□□□□ 0.26
PDXDC1-216ENST00000569715 EHBP1L1Q8N3D4 1523 aa16.67■□□□□ 0.26
PDXDC1-216ENST00000569715 HNRNPUL2Q1KMD3 747 aaKnown RBP16.66■□□□□ 0.26
PDXDC1-216ENST00000569715 ABCA8O94911 1581 aa16.65■□□□□ 0.26
PDXDC1-216ENST00000569715 CCNB3Q8WWL7 1395 aa16.64■□□□□ 0.25
PDXDC1-216ENST00000569715 HRCP23327 699 aa16.64■□□□□ 0.25
PDXDC1-216ENST00000569715 SUPT6HQ7KZ85 1726 aaKnown RBP16.63■□□□□ 0.25
PDXDC1-216ENST00000569715 NCOA2Q15596 1464 aa16.62■□□□□ 0.25
PDXDC1-216ENST00000569715 PTPRGP23470 1445 aa16.62■□□□□ 0.25
PDXDC1-216ENST00000569715 ARHGEF11O15085 1522 aa16.59■□□□□ 0.25
PDXDC1-216ENST00000569715 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.57■□□□□ 0.24
PDXDC1-216ENST00000569715 FGD6Q6ZV73 1430 aa16.55■□□□□ 0.24
PDXDC1-216ENST00000569715 ATP10BO94823 1461 aa16.54■□□□□ 0.24
PDXDC1-216ENST00000569715 MYOM3Q5VTT5 1437 aa16.54■□□□□ 0.24
PDXDC1-216ENST00000569715 ITGAEP38570 1179 aa16.54■□□□□ 0.24
PDXDC1-216ENST00000569715 UACAQ9BZF9 1416 aa16.53■□□□□ 0.24
PDXDC1-216ENST00000569715 FAM50AQ14320 339 aaKnown RBP16.53■□□□□ 0.24
PDXDC1-216ENST00000569715 OSCARQ8IYS5 282 aa16.52■□□□□ 0.23
PDXDC1-216ENST00000569715 KIF14Q15058 1648 aa16.51■□□□□ 0.23
PDXDC1-216ENST00000569715 TROQ12816 1431 aaPredicted RBP16.51■□□□□ 0.23
PDXDC1-216ENST00000569715 ABCC2Q92887 1545 aa16.5■□□□□ 0.23
PDXDC1-216ENST00000569715 CDK11AQ9UQ88 783 aaPredicted RBP16.49■□□□□ 0.23
PDXDC1-216ENST00000569715 ADCY10Q96PN6 1610 aa16.48■□□□□ 0.23
PDXDC1-216ENST00000569715 PTPN23Q9H3S7 1636 aa16.48■□□□□ 0.23
PDXDC1-216ENST00000569715 CCER1Q8TC90 406 aaPredicted RBP16.46■□□□□ 0.22
PDXDC1-216ENST00000569715 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.45■□□□□ 0.226e-6■□□□□ 9.1
PDXDC1-216ENST00000569715 TCOF1Q13428 1488 aaKnown RBP16.43■□□□□ 0.22
PDXDC1-216ENST00000569715 PLEKHD1A6NEE1 506 aa16.42■□□□□ 0.22
PDXDC1-216ENST00000569715 ZCCHC11Q5TAX3 1644 aaKnown RBP16.42■□□□□ 0.22
PDXDC1-216ENST00000569715 UHRF1BP1LA0JNW5 1464 aa16.42■□□□□ 0.22
PDXDC1-216ENST00000569715 PTPRKQ15262 1439 aa16.41■□□□□ 0.22
PDXDC1-216ENST00000569715 MIA2Q96PC5 1412 aa16.41■□□□□ 0.22
PDXDC1-216ENST00000569715 ABCC10Q5T3U5 1492 aa16.39■□□□□ 0.21
PDXDC1-216ENST00000569715 ITSN2Q9NZM3 1697 aa16.39■□□□□ 0.21
PDXDC1-216ENST00000569715 CDC42BPAQ5VT25 1732 aa16.39■□□□□ 0.21
PDXDC1-216ENST00000569715 GPATCH8Q9UKJ3 1502 aaKnown RBP16.39■□□□□ 0.21
PDXDC1-216ENST00000569715 KDM5BQ9UGL1 1544 aa16.38■□□□□ 0.21
PDXDC1-216ENST00000569715 ZNF644Q9H582 1327 aaPredicted RBP16.36■□□□□ 0.21
PDXDC1-216ENST00000569715 RAB3GAP2Q9H2M9 1393 aa16.35■□□□□ 0.21
PDXDC1-216ENST00000569715 ZEB1P37275 1124 aaPredicted RBP16.34■□□□□ 0.21
PDXDC1-216ENST00000569715 SETD5Q9C0A6 1442 aa16.34■□□□□ 0.21
PDXDC1-216ENST00000569715 TTC37Q6PGP7 1564 aa16.33■□□□□ 0.21
PDXDC1-216ENST00000569715 CAMSAP2Q08AD1 1489 aa16.33■□□□□ 0.2
PDXDC1-216ENST00000569715 CFDP1Q9UEE9 299 aaPredicted RBP16.32■□□□□ 0.2
PDXDC1-216ENST00000569715 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.31■□□□□ 0.22e-7■■■■■ 47.7
PDXDC1-216ENST00000569715 DNMT1P26358 1616 aaKnown RBP16.31■□□□□ 0.2
PDXDC1-216ENST00000569715 DHX57Q6P158 1386 aaKnown RBP16.3■□□□□ 0.2
PDXDC1-216ENST00000569715 CDC42BPBQ9Y5S2 1711 aa16.3■□□□□ 0.2
PDXDC1-216ENST00000569715 PREX2Q70Z35 1606 aa16.3■□□□□ 0.2
PDXDC1-216ENST00000569715 ZNF777Q9ULD5 760 aaPredicted RBP16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms