RNA–Protein interactions for RNA: ENST00000566126.5

CLK3-217, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 732 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-217ENST00000566126 FHAD1B1AJZ9 1412 aa31.03■■■□□ 2.56
CLK3-217ENST00000566126 TSPOAP1O95153 1857 aa30.97■■■□□ 2.55
CLK3-217ENST00000566126 NPM1P06748 294 aaKnown RBP eCLIP30.94■■■□□ 2.54
CLK3-217ENST00000566126 JPH4Q96JJ6 628 aa30.94■■■□□ 2.54
CLK3-217ENST00000566126 ADCY10Q96PN6 1610 aa30.93■■■□□ 2.54
CLK3-217ENST00000566126 WRNQ14191 1432 aaPredicted RBP eCLIP30.89■■■□□ 2.53
CLK3-217ENST00000566126 ERICH3Q5RHP9 1530 aa30.85■■■□□ 2.53
CLK3-217ENST00000566126 ADGRL1O94910 1474 aa30.81■■■□□ 2.52
CLK3-217ENST00000566126 RUSC2Q8N2Y8 1516 aa30.8■■■□□ 2.52
CLK3-217ENST00000566126 HECW2Q9P2P5 1572 aa30.78■■■□□ 2.52
CLK3-217ENST00000566126 BIVM-ERCC5R4GMW8 1640 aa30.72■■■□□ 2.51
CLK3-217ENST00000566126 TOP2BQ02880 1626 aa30.69■■■□□ 2.5
CLK3-217ENST00000566126 PPRC1Q5VV67 1664 aaKnown RBP30.66■■■□□ 2.5
CLK3-217ENST00000566126 COL17A1Q9UMD9 1497 aaPredicted RBP30.53■■■□□ 2.48
CLK3-217ENST00000566126 GLI2P10070 1586 aa30.51■■■□□ 2.47
CLK3-217ENST00000566126 KIAA0586Q9BVV6 1533 aa30.47■■■□□ 2.47
CLK3-217ENST00000566126 FBXO41Q8TF61 875 aa30.46■■■□□ 2.47
CLK3-217ENST00000566126 ASXL2Q76L83 1435 aa30.45■■■□□ 2.46
CLK3-217ENST00000566126 ABCC2Q92887 1545 aa30.43■■■□□ 2.46
CLK3-217ENST00000566126 PLB1Q6P1J6 1458 aa30.41■■■□□ 2.46
CLK3-217ENST00000566126 PTPRGP23470 1445 aa30.4■■■□□ 2.46
CLK3-217ENST00000566126 CUL7Q14999 1698 aa30.34■■■□□ 2.45
CLK3-217ENST00000566126 MAP3K4Q9Y6R4 1608 aa30.33■■■□□ 2.45
CLK3-217ENST00000566126 TTBK1Q5TCY1 1321 aaPredicted RBP30.31■■■□□ 2.44
CLK3-217ENST00000566126 EPRSP07814 1512 aaKnown RBP30.27■■■□□ 2.44
CLK3-217ENST00000566126 TNIKQ9UKE5 1360 aa30.26■■■□□ 2.43
CLK3-217ENST00000566126 TEX14Q8IWB6 1497 aa30.25■■■□□ 2.43
CLK3-217ENST00000566126 UHRF1BP1LA0JNW5 1464 aa30.24■■■□□ 2.43
CLK3-217ENST00000566126 IGF1RP08069 1367 aa30.2■■■□□ 2.43
CLK3-217ENST00000566126 CARMIL2Q6F5E8 1435 aa30.16■■■□□ 2.42
CLK3-217ENST00000566126 UACAQ9BZF9 1416 aa30.15■■■□□ 2.42
CLK3-217ENST00000566126 KDM5BQ9UGL1 1544 aa30.13■■■□□ 2.41
CLK3-217ENST00000566126 ZCCHC11Q5TAX3 1644 aaKnown RBP30.08■■■□□ 2.41
CLK3-217ENST00000566126 KIF21BO75037 1637 aa30.03■■■□□ 2.4
CLK3-217ENST00000566126 IQGAP2Q13576 1575 aa30.02■■■□□ 2.4
CLK3-217ENST00000566126 DISP1Q96F81 1524 aa30.01■■■□□ 2.4
CLK3-217ENST00000566126 KIF27Q86VH2 1401 aa30.01■■■□□ 2.39
CLK3-217ENST00000566126 LMTK3Q96Q04 1460 aa30■■■□□ 2.39
CLK3-217ENST00000566126 SUPT5HO00267 1087 aaKnown RBP30■■■□□ 2.39
CLK3-217ENST00000566126 WDR7Q9Y4E6 1490 aa29.94■■■□□ 2.38
CLK3-217ENST00000566126 CARMIL1Q5VZK9 1371 aa29.94■■■□□ 2.38
CLK3-217ENST00000566126 MAGI3Q5TCQ9 1506 aa29.93■■■□□ 2.38
CLK3-217ENST00000566126 PTPRMP28827 1452 aa29.9■■■□□ 2.38
CLK3-217ENST00000566126 CFAP43Q8NDM7 1665 aa29.89■■■□□ 2.38
CLK3-217ENST00000566126 CD109Q6YHK3 1445 aa29.88■■■□□ 2.37
CLK3-217ENST00000566126 ADAMTSL3P82987 1691 aa29.86■■■□□ 2.37
CLK3-217ENST00000566126 PCF11O94913 1555 aaKnown RBP29.8■■■□□ 2.36
CLK3-217ENST00000566126 UGGT2Q9NYU1 1516 aa29.8■■■□□ 2.36
CLK3-217ENST00000566126 KIAA0556O60303 1618 aa29.79■■■□□ 2.36
CLK3-217ENST00000566126 ILDR2Q71H61 639 aa29.75■■■□□ 2.35
CLK3-217ENST00000566126 KCNH8Q96L42 1107 aa29.74■■■□□ 2.35
CLK3-217ENST00000566126 ARAP3Q8WWN8 1544 aa29.74■■■□□ 2.35
CLK3-217ENST00000566126 SOCS7O14512 581 aa29.72■■■□□ 2.35
CLK3-217ENST00000566126 BCORL1Q5H9F3 1711 aa29.67■■■□□ 2.34
CLK3-217ENST00000566126 MADDQ8WXG6 1647 aa29.67■■■□□ 2.34
CLK3-217ENST00000566126 DISP3Q9P2K9 1392 aa29.61■■■□□ 2.33
CLK3-217ENST00000566126 ABCA8O94911 1581 aa29.6■■■□□ 2.33
CLK3-217ENST00000566126 CERKQ8TCT0 537 aa29.6■■■□□ 2.33
CLK3-217ENST00000566126 HSPA2P54652 639 aa29.55■■■□□ 2.32
CLK3-217ENST00000566126 RAPGEF2Q9Y4G8 1499 aa29.54■■■□□ 2.32
CLK3-217ENST00000566126 RAPGEF3O95398 923 aa29.52■■■□□ 2.32
CLK3-217ENST00000566126 RIMS1Q86UR5 1692 aaKnown RBP29.51■■■□□ 2.31
CLK3-217ENST00000566126 PHLDB1Q86UU1 1377 aa29.49■■■□□ 2.31
CLK3-217ENST00000566126 ARID4BQ4LE39 1312 aaPredicted RBP29.47■■■□□ 2.31
CLK3-217ENST00000566126 FRMPD1Q5SYB0 1578 aa29.47■■■□□ 2.31
CLK3-217ENST00000566126 ABCA9Q8IUA7 1624 aa29.45■■■□□ 2.3
CLK3-217ENST00000566126 CTTNBP2Q8WZ74 1663 aa29.4■■■□□ 2.3
CLK3-217ENST00000566126 GOLGA3Q08378 1498 aa29.39■■■□□ 2.3
CLK3-217ENST00000566126 NEO1Q92859 1461 aa29.38■■■□□ 2.29
CLK3-217ENST00000566126 ARHGEF40Q8TER5 1519 aa29.35■■■□□ 2.29
CLK3-217ENST00000566126 SPATA31D1Q6ZQQ2 1576 aa29.35■■■□□ 2.29
CLK3-217ENST00000566126 ATP10BO94823 1461 aa29.34■■■□□ 2.29
CLK3-217ENST00000566126 ARID3CA6NKF2 412 aa29.32■■■□□ 2.28
CLK3-217ENST00000566126 PLPPR3Q6T4P5 718 aa29.32■■■□□ 2.28
CLK3-217ENST00000566126 SIGLEC1Q9BZZ2 1709 aa29.25■■■□□ 2.27
CLK3-217ENST00000566126 RICTORQ6R327 1708 aa29.23■■■□□ 2.27
CLK3-217ENST00000566126 POGZQ7Z3K3 1410 aa29.18■■■□□ 2.26
CLK3-217ENST00000566126 FANCAO15360 1455 aa29.17■■■□□ 2.26
CLK3-217ENST00000566126 DENND4BO75064 1496 aaPredicted RBP29.17■■■□□ 2.26
CLK3-217ENST00000566126 TTC37Q6PGP7 1564 aa29.16■■■□□ 2.26
CLK3-217ENST00000566126 FER1L4A9Z1Z3 1794 aa29.16■■■□□ 2.26
CLK3-217ENST00000566126 STRCQ7RTU9 1775 aa29.15■■■□□ 2.26
CLK3-217ENST00000566126 FHOD3Q2V2M9 1422 aa29.14■■■□□ 2.26
CLK3-217ENST00000566126 AKNAQ7Z591 1439 aa29.12■■■□□ 2.25
CLK3-217ENST00000566126 PREX1Q8TCU6 1659 aa29.12■■■□□ 2.25
CLK3-217ENST00000566126 YEATS2Q9ULM3 1422 aa29.11■■■□□ 2.25
CLK3-217ENST00000566126 ZMYM4Q5VZL5 1548 aa29.1■■■□□ 2.25
CLK3-217ENST00000566126 MLECQ14165 292 aa29.07■■■□□ 2.24
CLK3-217ENST00000566126 ZFYVE16Q7Z3T8 1539 aa29.07■■■□□ 2.24
CLK3-217ENST00000566126 P3H3Q8IVL6 736 aa29.07■■■□□ 2.24
CLK3-217ENST00000566126 DMRT2Q9Y5R5 561 aa29.04■■■□□ 2.24
CLK3-217ENST00000566126 RAPGEF6Q8TEU7 1601 aa29.04■■■□□ 2.24
CLK3-217ENST00000566126 EFCAB5A4FU69 1503 aa29.04■■■□□ 2.24
CLK3-217ENST00000566126 FAM9AQ8IZU1 332 aaPredicted RBP29.02■■■□□ 2.24
CLK3-217ENST00000566126 ARHGEF12Q9NZN5 1544 aa28.99■■■□□ 2.23
CLK3-217ENST00000566126 CFAP74Q9C0B2 1584 aa28.99■■■□□ 2.23
CLK3-217ENST00000566126 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.98■■■□□ 2.23
CLK3-217ENST00000566126 HNRNPUL2Q1KMD3 747 aaKnown RBP28.98■■■□□ 2.23
CLK3-217ENST00000566126 MAGI2Q86UL8 1455 aa28.97■■■□□ 2.23
CLK3-217ENST00000566126 PRXQ9BXM0 1461 aa28.97■■■□□ 2.23
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms