RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 ERICH3Q5RHP9 1530 aa13.23□□□□□ -0.29
VPS4A-203ENST00000564399 SUPT5HO00267 1087 aaKnown RBP13.22□□□□□ -0.29
VPS4A-203ENST00000564399 TOP2BQ02880 1626 aa13.21□□□□□ -0.29
VPS4A-203ENST00000564399 BIVM-ERCC5R4GMW8 1640 aa13.21□□□□□ -0.29
VPS4A-203ENST00000564399 ABCC10Q5T3U5 1492 aa13.21□□□□□ -0.3
VPS4A-203ENST00000564399 TSPOAP1O95153 1857 aa13.18□□□□□ -0.3
VPS4A-203ENST00000564399 KDM6BO15054 1643 aa13.17□□□□□ -0.3
VPS4A-203ENST00000564399 DIP2BQ9P265 1576 aa13.16□□□□□ -0.3
VPS4A-203ENST00000564399 KDM4FA0A1W2PPD8 638 aa13.16□□□□□ -0.3
VPS4A-203ENST00000564399 MAPKBP1O60336 1514 aa13.16□□□□□ -0.3
VPS4A-203ENST00000564399 RUSC2Q8N2Y8 1516 aa13.13□□□□□ -0.31
VPS4A-203ENST00000564399 ADCY10Q96PN6 1610 aa13.13□□□□□ -0.31
VPS4A-203ENST00000564399 TTBK1Q5TCY1 1321 aaPredicted RBP13.09□□□□□ -0.31
VPS4A-203ENST00000564399 KIAA0586Q9BVV6 1533 aa13.07□□□□□ -0.32
VPS4A-203ENST00000564399 PTPRGP23470 1445 aa13.04□□□□□ -0.32
VPS4A-203ENST00000564399 IGF1RP08069 1367 aa13□□□□□ -0.33
VPS4A-203ENST00000564399 CUL7Q14999 1698 aa12.99□□□□□ -0.33
VPS4A-203ENST00000564399 ADGRL1O94910 1474 aa12.98□□□□□ -0.33
VPS4A-203ENST00000564399 ASXL2Q76L83 1435 aa12.98□□□□□ -0.33
VPS4A-203ENST00000564399 KIF27Q86VH2 1401 aa12.98□□□□□ -0.33
VPS4A-203ENST00000564399 ABCC2Q92887 1545 aa12.98□□□□□ -0.33
VPS4A-203ENST00000564399 PLB1Q6P1J6 1458 aa12.97□□□□□ -0.33
VPS4A-203ENST00000564399 CARMIL2Q6F5E8 1435 aa12.97□□□□□ -0.33
VPS4A-203ENST00000564399 TNIKQ9UKE5 1360 aa12.97□□□□□ -0.33
VPS4A-203ENST00000564399 PPRC1Q5VV67 1664 aaKnown RBP12.96□□□□□ -0.34
VPS4A-203ENST00000564399 GLI2P10070 1586 aa12.94□□□□□ -0.34
VPS4A-203ENST00000564399 CARMIL1Q5VZK9 1371 aa12.94□□□□□ -0.34
VPS4A-203ENST00000564399 UACAQ9BZF9 1416 aa12.91□□□□□ -0.34
VPS4A-203ENST00000564399 COL17A1Q9UMD9 1497 aaPredicted RBP12.91□□□□□ -0.34
VPS4A-203ENST00000564399 HECW2Q9P2P5 1572 aa12.9□□□□□ -0.34
VPS4A-203ENST00000564399 UHRF1BP1LA0JNW5 1464 aa12.9□□□□□ -0.34
VPS4A-203ENST00000564399 IQGAP2Q13576 1575 aa12.9□□□□□ -0.35
VPS4A-203ENST00000564399 TEX14Q8IWB6 1497 aa12.89□□□□□ -0.35
VPS4A-203ENST00000564399 EPRSP07814 1512 aaKnown RBP12.88□□□□□ -0.35
VPS4A-203ENST00000564399 MAP3K4Q9Y6R4 1608 aa12.87□□□□□ -0.35
VPS4A-203ENST00000564399 KDM5BQ9UGL1 1544 aa12.85□□□□□ -0.35
VPS4A-203ENST00000564399 DISP1Q96F81 1524 aa12.84□□□□□ -0.35
VPS4A-203ENST00000564399 ZCCHC11Q5TAX3 1644 aaKnown RBP12.84□□□□□ -0.35
VPS4A-203ENST00000564399 KCNH8Q96L42 1107 aa12.79□□□□□ -0.36
VPS4A-203ENST00000564399 WDR7Q9Y4E6 1490 aa12.78□□□□□ -0.36
VPS4A-203ENST00000564399 UGGT2Q9NYU1 1516 aa12.78□□□□□ -0.36
VPS4A-203ENST00000564399 KIAA0556O60303 1618 aa12.77□□□□□ -0.36
VPS4A-203ENST00000564399 CD109Q6YHK3 1445 aa12.77□□□□□ -0.37
VPS4A-203ENST00000564399 RAPGEF2Q9Y4G8 1499 aa12.77□□□□□ -0.37
VPS4A-203ENST00000564399 FBXO41Q8TF61 875 aa12.75□□□□□ -0.37
VPS4A-203ENST00000564399 CFAP43Q8NDM7 1665 aa12.74□□□□□ -0.37
VPS4A-203ENST00000564399 MAGI3Q5TCQ9 1506 aa12.73□□□□□ -0.37
VPS4A-203ENST00000564399 KIF21BO75037 1637 aa12.73□□□□□ -0.37
VPS4A-203ENST00000564399 CTTNBP2Q8WZ74 1663 aa12.68□□□□□ -0.38
VPS4A-203ENST00000564399 GOLGA3Q08378 1498 aa12.68□□□□□ -0.38
VPS4A-203ENST00000564399 ARID3CA6NKF2 412 aa12.67□□□□□ -0.38
VPS4A-203ENST00000564399 FAM9AQ8IZU1 332 aaPredicted RBP12.67□□□□□ -0.38
VPS4A-203ENST00000564399 ABCA8O94911 1581 aa12.67□□□□□ -0.38
VPS4A-203ENST00000564399 ARAP3Q8WWN8 1544 aa12.65□□□□□ -0.38
VPS4A-203ENST00000564399 PTPRMP28827 1452 aa12.65□□□□□ -0.38
VPS4A-203ENST00000564399 ARID4BQ4LE39 1312 aaPredicted RBP12.63□□□□□ -0.39
VPS4A-203ENST00000564399 ADAMTSL3P82987 1691 aa12.62□□□□□ -0.39
VPS4A-203ENST00000564399 RAPGEF3O95398 923 aa12.62□□□□□ -0.39
VPS4A-203ENST00000564399 P3H3Q8IVL6 736 aa12.61□□□□□ -0.39
VPS4A-203ENST00000564399 PHLDB1Q86UU1 1377 aa12.6□□□□□ -0.39
VPS4A-203ENST00000564399 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.58□□□□□ -0.4
VPS4A-203ENST00000564399 HNRNPUL2Q1KMD3 747 aaKnown RBP12.58□□□□□ -0.4
VPS4A-203ENST00000564399 ATP10BO94823 1461 aa12.58□□□□□ -0.4
VPS4A-203ENST00000564399 BCORL1Q5H9F3 1711 aa12.57□□□□□ -0.4
VPS4A-203ENST00000564399 PCF11O94913 1555 aaKnown RBP12.57□□□□□ -0.4
VPS4A-203ENST00000564399 ABCA9Q8IUA7 1624 aa12.57□□□□□ -0.4
VPS4A-203ENST00000564399 MADDQ8WXG6 1647 aa12.56□□□□□ -0.4
VPS4A-203ENST00000564399 PLPPR3Q6T4P5 718 aa12.56□□□□□ -0.4
VPS4A-203ENST00000564399 NEO1Q92859 1461 aa12.55□□□□□ -0.4
VPS4A-203ENST00000564399 LMTK3Q96Q04 1460 aa12.55□□□□□ -0.4
VPS4A-203ENST00000564399 RIMS1Q86UR5 1692 aaKnown RBP12.54□□□□□ -0.4
VPS4A-203ENST00000564399 HSPA2P54652 639 aa12.53□□□□□ -0.4
VPS4A-203ENST00000564399 PRXQ9BXM0 1461 aa12.52□□□□□ -0.41
VPS4A-203ENST00000564399 FRMPD1Q5SYB0 1578 aa12.51□□□□□ -0.41
VPS4A-203ENST00000564399 RAPGEF6Q8TEU7 1601 aa12.5□□□□□ -0.41
VPS4A-203ENST00000564399 DENND4BO75064 1496 aaPredicted RBP12.48□□□□□ -0.41
VPS4A-203ENST00000564399 CERKQ8TCT0 537 aa12.48□□□□□ -0.41
VPS4A-203ENST00000564399 ARHGEF40Q8TER5 1519 aa12.47□□□□□ -0.41
VPS4A-203ENST00000564399 POGZQ7Z3K3 1410 aa12.47□□□□□ -0.41
VPS4A-203ENST00000564399 PLEKHD1A6NEE1 506 aa12.47□□□□□ -0.41
VPS4A-203ENST00000564399 RANGAP1P46060 587 aaPredicted RBP12.47□□□□□ -0.41
VPS4A-203ENST00000564399 SOCS7O14512 581 aa12.46□□□□□ -0.41
VPS4A-203ENST00000564399 MLECQ14165 292 aa12.46□□□□□ -0.41
VPS4A-203ENST00000564399 AKNAQ7Z591 1439 aa12.45□□□□□ -0.42
VPS4A-203ENST00000564399 RICTORQ6R327 1708 aa12.45□□□□□ -0.42
VPS4A-203ENST00000564399 FANCAO15360 1455 aa12.45□□□□□ -0.42
VPS4A-203ENST00000564399 SAMD9Q5K651 1589 aa12.44□□□□□ -0.42
VPS4A-203ENST00000564399 NUP153P49790 1475 aaKnown RBP12.43□□□□□ -0.42
VPS4A-203ENST00000564399 FHOD3Q2V2M9 1422 aa12.43□□□□□ -0.42
VPS4A-203ENST00000564399 ILDR2Q71H61 639 aa12.42□□□□□ -0.42
VPS4A-203ENST00000564399 CFAP74Q9C0B2 1584 aa12.42□□□□□ -0.42
VPS4A-203ENST00000564399 ZFYVE16Q7Z3T8 1539 aa12.42□□□□□ -0.42
VPS4A-203ENST00000564399 FER1L4A9Z1Z3 1794 aa12.41□□□□□ -0.42
VPS4A-203ENST00000564399 CSRNP3Q8WYN3 585 aa12.41□□□□□ -0.42
VPS4A-203ENST00000564399 YEATS2Q9ULM3 1422 aa12.41□□□□□ -0.42
VPS4A-203ENST00000564399 EFCAB5A4FU69 1503 aa12.41□□□□□ -0.42
VPS4A-203ENST00000564399 DISP3Q9P2K9 1392 aa12.41□□□□□ -0.42
VPS4A-203ENST00000564399 SIGLEC1Q9BZZ2 1709 aa12.39□□□□□ -0.43
VPS4A-203ENST00000564399 ZMYM4Q5VZL5 1548 aa12.38□□□□□ -0.43
VPS4A-203ENST00000564399 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms