RNA–Protein interactions for RNA: ENST00000560634.1

CSPG4P11-201, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 11, humanhuman

BASIC

Gene CSPG4P11, Length 4,910 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P11-201ENST00000560634 MTUS2Q5JR59 1369 aa17.38■□□□□ 0.37
CSPG4P11-201ENST00000560634 SCAF1Q9H7N4 1312 aaKnown RBP17.38■□□□□ 0.37
CSPG4P11-201ENST00000560634 CCDC180Q9P1Z9 1646 aa17.38■□□□□ 0.37
CSPG4P11-201ENST00000560634 IRX6P78412 446 aaPredicted RBP17.36■□□□□ 0.37
CSPG4P11-201ENST00000560634 PPM1GO15355 546 aaPredicted RBP17.35■□□□□ 0.37
CSPG4P11-201ENST00000560634 TNNT2P45379 298 aaPredicted RBP17.34■□□□□ 0.37
CSPG4P11-201ENST00000560634 ERICH6BQ5W0A0 696 aa17.32■□□□□ 0.36
CSPG4P11-201ENST00000560634 SCRIBQ14160 1630 aa17.31■□□□□ 0.36
CSPG4P11-201ENST00000560634 CDCA8Q53HL2 280 aa17.29■□□□□ 0.36
CSPG4P11-201ENST00000560634 CFAP53Q96M91 514 aa17.28■□□□□ 0.36
CSPG4P11-201ENST00000560634 ZRSR1Q15695 479 aaKnown RBP17.26■□□□□ 0.35
CSPG4P11-201ENST00000560634 CLIP1P30622 1438 aa17.25■□□□□ 0.35
CSPG4P11-201ENST00000560634 PTMAP06454 111 aaKnown RBP17.25■□□□□ 0.35
CSPG4P11-201ENST00000560634 CASC1Q6TDU7 716 aa17.24■□□□□ 0.35
CSPG4P11-201ENST00000560634 HIRIP3Q9BW71 556 aaPredicted RBP17.24■□□□□ 0.35
CSPG4P11-201ENST00000560634 PLPPR3Q6T4P5 718 aa17.21■□□□□ 0.35
CSPG4P11-201ENST00000560634 RSF1Q96T23 1441 aaPredicted RBP17.21■□□□□ 0.35
CSPG4P11-201ENST00000560634 KNSTRNQ9Y448 316 aa17.2■□□□□ 0.34
CSPG4P11-201ENST00000560634 RRP7BPQ9NSQ0 103 aa17.18■□□□□ 0.34
CSPG4P11-201ENST00000560634 PPP4R2Q9NY27 417 aa17.18■□□□□ 0.34
CSPG4P11-201ENST00000560634 CHMP4BQ9H444 224 aaKnown RBP17.18■□□□□ 0.34
CSPG4P11-201ENST00000560634 DNTTIP2Q5QJE6 756 aaKnown RBP17.18■□□□□ 0.34
CSPG4P11-201ENST00000560634 EEA1Q15075 1411 aa17.16■□□□□ 0.34
CSPG4P11-201ENST00000560634 FTSJ3Q8IY81 847 aaKnown RBP17.16■□□□□ 0.34
CSPG4P11-201ENST00000560634 SUPT16HQ9Y5B9 1047 aaKnown RBP17.16■□□□□ 0.34
CSPG4P11-201ENST00000560634 PPP1R15AO75807 674 aaPredicted RBP17.15■□□□□ 0.34
CSPG4P11-201ENST00000560634 CHMP7Q8WUX9 453 aaPredicted RBP17.14■□□□□ 0.33
CSPG4P11-201ENST00000560634 MS4A1P11836 297 aa17.13■□□□□ 0.33
CSPG4P11-201ENST00000560634 PLEKHD1A6NEE1 506 aa17.13■□□□□ 0.33
CSPG4P11-201ENST00000560634 NUDCQ9Y266 331 aa17.11■□□□□ 0.33
CSPG4P11-201ENST00000560634 RGL3Q3MIN7 710 aa17.09■□□□□ 0.33
CSPG4P11-201ENST00000560634 MAPK8IP3Q9UPT6 1336 aa17.09■□□□□ 0.33
CSPG4P11-201ENST00000560634 C14orf37Q86TY3 774 aa17.09■□□□□ 0.33
CSPG4P11-201ENST00000560634 CARD11Q9BXL7 1154 aa17.09■□□□□ 0.33
CSPG4P11-201ENST00000560634 NOP58Q9Y2X3 529 aaKnown RBP17.08■□□□□ 0.33
CSPG4P11-201ENST00000560634 A0A0G2JS52 829 aa17.08■□□□□ 0.32
CSPG4P11-201ENST00000560634 NRDCO43847 1150 aa17.08■□□□□ 0.32
CSPG4P11-201ENST00000560634 NAP1L5Q96NT1 182 aaPredicted RBP17.07■□□□□ 0.32
CSPG4P11-201ENST00000560634 GOLGA6L6A8MZA4 724 aa17.06■□□□□ 0.32
CSPG4P11-201ENST00000560634 GOLGA3Q08378 1498 aa17.05■□□□□ 0.32
CSPG4P11-201ENST00000560634 RB1CC1Q8TDY2 1594 aa17.05■□□□□ 0.32
CSPG4P11-201ENST00000560634 ZBTB7CA1YPR0 619 aa17.04■□□□□ 0.32
CSPG4P11-201ENST00000560634 RGS3P49796 1198 aa17.03■□□□□ 0.32
CSPG4P11-201ENST00000560634 CEP162Q5TB80 1403 aa17.02■□□□□ 0.32
CSPG4P11-201ENST00000560634 LAS1LQ9Y4W2 734 aaKnown RBP17.02■□□□□ 0.32
CSPG4P11-201ENST00000560634 CFDP1Q9UEE9 299 aaPredicted RBP17.02■□□□□ 0.31
CSPG4P11-201ENST00000560634 HSP90AB1P08238 724 aaKnown RBP17.01■□□□□ 0.31
CSPG4P11-201ENST00000560634 PNNQ9H307 717 aaKnown RBP17■□□□□ 0.31
CSPG4P11-201ENST00000560634 NEUROD2Q15784 382 aa16.99■□□□□ 0.31
CSPG4P11-201ENST00000560634 TIMELESSQ9UNS1 1208 aa16.98■□□□□ 0.31
CSPG4P11-201ENST00000560634 PLCB2Q00722 1185 aa16.98■□□□□ 0.31
CSPG4P11-201ENST00000560634 FRAT1Q92837 279 aaPredicted RBP16.98■□□□□ 0.31
CSPG4P11-201ENST00000560634 KCNH8Q96L42 1107 aa16.98■□□□□ 0.31
CSPG4P11-201ENST00000560634 MYO15BQ96JP2 1530 aa16.98■□□□□ 0.31
CSPG4P11-201ENST00000560634 CFAP44Q96MT7 982 aa16.98■□□□□ 0.31
CSPG4P11-201ENST00000560634 L1TD1Q5T7N2 865 aaKnown RBP16.97■□□□□ 0.31
CSPG4P11-201ENST00000560634 FGD1P98174 961 aa16.96■□□□□ 0.31
CSPG4P11-201ENST00000560634 CHAF1AQ13111 956 aaPredicted RBP16.95■□□□□ 0.3
CSPG4P11-201ENST00000560634 HSCBQ8IWL3 235 aa16.94■□□□□ 0.3
CSPG4P11-201ENST00000560634 GOLGA6L4A6NEF3 574 aa16.94■□□□□ 0.3
CSPG4P11-201ENST00000560634 TNIKQ9UKE5 1360 aa16.94■□□□□ 0.3
CSPG4P11-201ENST00000560634 HAP1P54257 671 aaPredicted RBP16.93■□□□□ 0.3
CSPG4P11-201ENST00000560634 NACADO15069 1562 aa16.93■□□□□ 0.3
CSPG4P11-201ENST00000560634 KCNJ4P48050 445 aa16.93■□□□□ 0.3
CSPG4P11-201ENST00000560634 TPRNQ4KMQ1 711 aa16.92■□□□□ 0.3
CSPG4P11-201ENST00000560634 POGKQ9P215 609 aa16.91■□□□□ 0.3
CSPG4P11-201ENST00000560634 OS9Q13438 667 aaPredicted RBP16.91■□□□□ 0.3
CSPG4P11-201ENST00000560634 CCER2I3L3R5 266 aa16.91■□□□□ 0.3
CSPG4P11-201ENST00000560634 PLEKHG5O94827 1062 aa16.91■□□□□ 0.3
CSPG4P11-201ENST00000560634 SENP3-EIF4A1A0A087X0R7 540 aa16.91■□□□□ 0.3
CSPG4P11-201ENST00000560634 B4GALNT3Q6L9W6 998 aa16.9■□□□□ 0.3
CSPG4P11-201ENST00000560634 RTN4Q9NQC3 1192 aaKnown RBP16.89■□□□□ 0.29
CSPG4P11-201ENST00000560634 MSNP26038 577 aaKnown RBP16.89■□□□□ 0.29
CSPG4P11-201ENST00000560634 TMF1P82094 1093 aa16.89■□□□□ 0.29
CSPG4P11-201ENST00000560634 MCCP23508 829 aa16.88■□□□□ 0.29
CSPG4P11-201ENST00000560634 SIN3AQ96ST3 1273 aa16.87■□□□□ 0.29
CSPG4P11-201ENST00000560634 KIF27Q86VH2 1401 aa16.87■□□□□ 0.29
CSPG4P11-201ENST00000560634 U2SURPO15042 1029 aaKnown RBP16.86■□□□□ 0.29
CSPG4P11-201ENST00000560634 SENP3Q9H4L4 574 aaPredicted RBP16.86■□□□□ 0.29
CSPG4P11-201ENST00000560634 CEP164Q9UPV0 1460 aa16.86■□□□□ 0.29
CSPG4P11-201ENST00000560634 PTMSP20962 102 aa16.85■□□□□ 0.29
CSPG4P11-201ENST00000560634 WRNQ14191 1432 aaPredicted RBP eCLIP16.84■□□□□ 0.29
CSPG4P11-201ENST00000560634 CC2D1BQ5T0F9 858 aaKnown RBP16.84■□□□□ 0.29
CSPG4P11-201ENST00000560634 DEKP35659 375 aaKnown RBP16.81■□□□□ 0.28
CSPG4P11-201ENST00000560634 NAP1L2Q9ULW6 460 aaPredicted RBP16.8■□□□□ 0.28
CSPG4P11-201ENST00000560634 ARID4BQ4LE39 1312 aaPredicted RBP16.79■□□□□ 0.28
CSPG4P11-201ENST00000560634 IPO8O15397 1037 aaKnown RBP16.79■□□□□ 0.28
CSPG4P11-201ENST00000560634 GBP4Q96PP9 640 aa16.78■□□□□ 0.28
CSPG4P11-201ENST00000560634 TULP1O00294 542 aaPredicted RBP16.78■□□□□ 0.28
CSPG4P11-201ENST00000560634 GOLGA2Q08379 1002 aa16.78■□□□□ 0.28
CSPG4P11-201ENST00000560634 CCNB3Q8WWL7 1395 aa16.78■□□□□ 0.28
CSPG4P11-201ENST00000560634 RBM19Q9Y4C8 960 aaKnown RBP16.78■□□□□ 0.28
CSPG4P11-201ENST00000560634 LMOD2Q6P5Q4 547 aa16.76■□□□□ 0.27
CSPG4P11-201ENST00000560634 DRC7Q8IY82 874 aa16.76■□□□□ 0.27
CSPG4P11-201ENST00000560634 FHAD1B1AJZ9 1412 aa16.76■□□□□ 0.27
CSPG4P11-201ENST00000560634 DCAF11Q8TEB1 546 aa16.75■□□□□ 0.27
CSPG4P11-201ENST00000560634 HDGFP51858 240 aaKnown RBP16.75■□□□□ 0.27
CSPG4P11-201ENST00000560634 NPHP1O15259 732 aa16.75■□□□□ 0.27
CSPG4P11-201ENST00000560634 MORC1Q86VD1 984 aa16.75■□□□□ 0.27
CSPG4P11-201ENST00000560634 TCERG1O14776 1098 aaKnown RBP16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 166.3 ms