RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 ARAP1Q96P48 1450 aa15.78■□□□□ 0.12
LDLR-208ENST00000558518 TONSLQ96HA7 1378 aa15.76■□□□□ 0.11
LDLR-208ENST00000558518 ARID3CA6NKF2 412 aa15.76■□□□□ 0.11
LDLR-208ENST00000558518 PPP1R15AO75807 674 aaPredicted RBP15.75■□□□□ 0.11
LDLR-208ENST00000558518 BAZ1BQ9UIG0 1483 aaKnown RBP15.74■□□□□ 0.11
LDLR-208ENST00000558518 CHIC2Q9UKJ5 165 aa15.74■□□□□ 0.11
LDLR-208ENST00000558518 WDR97A6NE52 1622 aa15.73■□□□□ 0.11
LDLR-208ENST00000558518 SETD5Q9C0A6 1442 aa15.71■□□□□ 0.1
LDLR-208ENST00000558518 DEKP35659 375 aaKnown RBP15.65■□□□□ 0.1
LDLR-208ENST00000558518 RRP7BPQ9NSQ0 103 aa15.65■□□□□ 0.1
LDLR-208ENST00000558518 CCER2I3L3R5 266 aa15.64■□□□□ 0.1
LDLR-208ENST00000558518 CCDC184Q52MB2 194 aa15.64■□□□□ 0.1
LDLR-208ENST00000558518 NPM2Q86SE8 214 aaKnown RBP15.64■□□□□ 0.1
LDLR-208ENST00000558518 RRBP1Q9P2E9 1410 aaKnown RBP15.64■□□□□ 0.09
LDLR-208ENST00000558518 MRS2Q9HD23 443 aa15.64■□□□□ 0.09
LDLR-208ENST00000558518 ZNF326Q5BKZ1 582 aaKnown RBP15.64■□□□□ 0.09
LDLR-208ENST00000558518 PHLDB1Q86UU1 1377 aa15.64■□□□□ 0.09
LDLR-208ENST00000558518 KIF27Q86VH2 1401 aa15.62■□□□□ 0.09
LDLR-208ENST00000558518 FOXD1Q16676 465 aa15.62■□□□□ 0.09
LDLR-208ENST00000558518 RTN4Q9NQC3 1192 aaKnown RBP15.61■□□□□ 0.09
LDLR-208ENST00000558518 SALL2Q9Y467 1007 aaPredicted RBP15.6■□□□□ 0.09
LDLR-208ENST00000558518 MAPKBP1O60336 1514 aa15.59■□□□□ 0.09
LDLR-208ENST00000558518 ARHGAP35Q9NRY4 1499 aa15.58■□□□□ 0.08
LDLR-208ENST00000558518 ATAD2BQ9ULI0 1458 aa15.58■□□□□ 0.08
LDLR-208ENST00000558518 HSPA5P11021 654 aaKnown RBP15.57■□□□□ 0.08
LDLR-208ENST00000558518 PPP4R2Q9NY27 417 aa15.55■□□□□ 0.08
LDLR-208ENST00000558518 RTL5Q5HYW3 569 aaPredicted RBP15.55■□□□□ 0.08
LDLR-208ENST00000558518 PRXQ9BXM0 1461 aa15.54■□□□□ 0.08
LDLR-208ENST00000558518 PAK3O75914 559 aaPredicted RBP15.54■□□□□ 0.08
LDLR-208ENST00000558518 CUX2O14529 1486 aa15.52■□□□□ 0.08
LDLR-208ENST00000558518 CCDC136Q96JN2 1154 aa15.51■□□□□ 0.07
LDLR-208ENST00000558518 NOP58Q9Y2X3 529 aaKnown RBP15.5■□□□□ 0.07
LDLR-208ENST00000558518 FANCIQ9NVI1 1328 aa15.5■□□□□ 0.07
LDLR-208ENST00000558518 EIF4G2P78344 907 aaKnown RBP eCLIP15.49■□□□□ 0.07
LDLR-208ENST00000558518 FHOD3Q2V2M9 1422 aa15.49■□□□□ 0.07
LDLR-208ENST00000558518 CARMIL1Q5VZK9 1371 aa15.48■□□□□ 0.07
LDLR-208ENST00000558518 UNC13AQ9UPW8 1703 aa15.48■□□□□ 0.07
LDLR-208ENST00000558518 MTUS2Q5JR59 1369 aa15.48■□□□□ 0.07
LDLR-208ENST00000558518 WASHC2AQ641Q2 1341 aa15.47■□□□□ 0.07
LDLR-208ENST00000558518 ANP32AP39687 249 aaKnown RBP15.47■□□□□ 0.07
LDLR-208ENST00000558518 LAS1LQ9Y4W2 734 aaKnown RBP15.46■□□□□ 0.07
LDLR-208ENST00000558518 TOP2BQ02880 1626 aa15.44■□□□□ 0.06
LDLR-208ENST00000558518 ZBTB47Q9UFB7 747 aaPredicted RBP15.43■□□□□ 0.06
LDLR-208ENST00000558518 LRRC9Q6ZRR7 1453 aa15.43■□□□□ 0.06
LDLR-208ENST00000558518 C11orf95C9JLR9 678 aaPredicted RBP15.42■□□□□ 0.06
LDLR-208ENST00000558518 TIMELESSQ9UNS1 1208 aa15.41■□□□□ 0.06
LDLR-208ENST00000558518 IGF1RP08069 1367 aa15.41■□□□□ 0.06
LDLR-208ENST00000558518 CUX1P39880 1505 aa15.4■□□□□ 0.06
LDLR-208ENST00000558518 ANO8Q9HCE9 1232 aaPredicted RBP15.4■□□□□ 0.06
LDLR-208ENST00000558518 ERICH3Q5RHP9 1530 aa15.4■□□□□ 0.06
LDLR-208ENST00000558518 L3MBTL2Q969R5 705 aa15.4■□□□□ 0.06
LDLR-208ENST00000558518 PRKRIP1Q9H875 184 aaPredicted RBP15.38■□□□□ 0.05
LDLR-208ENST00000558518 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.37■□□□□ 0.05
LDLR-208ENST00000558518 TIAM1Q13009 1591 aa15.36■□□□□ 0.05
LDLR-208ENST00000558518 BICRAQ9NZM4 1560 aa15.36■□□□□ 0.05
LDLR-208ENST00000558518 CCDC18Q5T9S5 1454 aa15.36■□□□□ 0.05
LDLR-208ENST00000558518 AKNAQ7Z591 1439 aa15.34■□□□□ 0.05
LDLR-208ENST00000558518 IL27Q8NEV9 243 aa15.34■□□□□ 0.05
LDLR-208ENST00000558518 FHAD1B1AJZ9 1412 aa15.32■□□□□ 0.04
LDLR-208ENST00000558518 TMC1Q8TDI8 760 aa15.32■□□□□ 0.04
LDLR-208ENST00000558518 PEG3Q9GZU2 1588 aa15.3■□□□□ 0.04
LDLR-208ENST00000558518 KDM2AQ9Y2K7 1162 aa15.3■□□□□ 0.04
LDLR-208ENST00000558518 SLC4A1APQ9BWU0 796 aaKnown RBP15.29■□□□□ 0.04
LDLR-208ENST00000558518 ZNF777Q9ULD5 760 aaPredicted RBP15.29■□□□□ 0.04
LDLR-208ENST00000558518 SKAP1Q86WV1 359 aa15.29■□□□□ 0.04
LDLR-208ENST00000558518 NEFMP07197 916 aa15.29■□□□□ 0.04
LDLR-208ENST00000558518 MPHOSPH9Q99550 1183 aa15.29■□□□□ 0.04
LDLR-208ENST00000558518 AQRO60306 1485 aaKnown RBP eCLIP15.27■□□□□ 0.042e-7■■■■■ 26.9
LDLR-208ENST00000558518 IPO9Q96P70 1041 aaKnown RBP15.27■□□□□ 0.04
LDLR-208ENST00000558518 PTPRKQ15262 1439 aa15.27■□□□□ 0.03
LDLR-208ENST00000558518 EIF5BO60841 1220 aaKnown RBP15.26■□□□□ 0.03
LDLR-208ENST00000558518 NBPF8Q3BBV2 869 aa15.26■□□□□ 0.03
LDLR-208ENST00000558518 PRKCSHP14314 528 aaPredicted RBP15.26■□□□□ 0.03
LDLR-208ENST00000558518 MYT1LQ9UL68 1186 aa15.25■□□□□ 0.03
LDLR-208ENST00000558518 FGD6Q6ZV73 1430 aa15.25■□□□□ 0.03
LDLR-208ENST00000558518 ZBED9Q6R2W3 1325 aa15.25■□□□□ 0.03
LDLR-208ENST00000558518 PCF11O94913 1555 aaKnown RBP15.23■□□□□ 0.03
LDLR-208ENST00000558518 SLC4A3P48751 1232 aa15.23■□□□□ 0.03
LDLR-208ENST00000558518 KIF7Q2M1P5 1343 aa15.23■□□□□ 0.03
LDLR-208ENST00000558518 UACAQ9BZF9 1416 aa15.22■□□□□ 0.03
LDLR-208ENST00000558518 EXOC6Q8TAG9 804 aa15.21■□□□□ 0.03
LDLR-208ENST00000558518 CCDC7Q96M83 1385 aa15.21■□□□□ 0.03
LDLR-208ENST00000558518 DAXXQ9UER7 740 aaPredicted RBP15.21■□□□□ 0.03
LDLR-208ENST00000558518 NUDCQ9Y266 331 aa15.21■□□□□ 0.02
LDLR-208ENST00000558518 BIVM-ERCC5R4GMW8 1640 aa15.2■□□□□ 0.02
LDLR-208ENST00000558518 RAD54L2Q9Y4B4 1467 aa15.2■□□□□ 0.02
LDLR-208ENST00000558518 PLIN1O60240 522 aa15.2■□□□□ 0.02
LDLR-208ENST00000558518 ERICH6BQ5W0A0 696 aa15.2■□□□□ 0.02
LDLR-208ENST00000558518 CNTLNQ9NXG0 1405 aa15.2■□□□□ 0.02
LDLR-208ENST00000558518 FGD5Q6ZNL6 1462 aa15.2■□□□□ 0.02
LDLR-208ENST00000558518 FMN1Q68DA7 1419 aa15.19■□□□□ 0.02
LDLR-208ENST00000558518 TDRD9Q8NDG6 1382 aaKnown RBP15.17■□□□□ 0.02
LDLR-208ENST00000558518 NAIPQ13075 1403 aa15.17■□□□□ 0.02
LDLR-208ENST00000558518 ARXQ96QS3 562 aa15.17■□□□□ 0.02
LDLR-208ENST00000558518 ZNF644Q9H582 1327 aaPredicted RBP15.15■□□□□ 0.02
LDLR-208ENST00000558518 CFTRP13569 1480 aa15.14■□□□□ 0.01
LDLR-208ENST00000558518 HFM1A2PYH4 1435 aa15.13■□□□□ 0.01
LDLR-208ENST00000558518 PDE4AP27815 886 aa15.11■□□□□ 0.01
LDLR-208ENST00000558518 NCOA2Q15596 1464 aa15.1■□□□□ 0.01
LDLR-208ENST00000558518 CARD11Q9BXL7 1154 aa15.1■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms