RNA–Protein interactions for RNA: ENST00000558065.1

SEMA4B-204, Transcript of semaphorin 4B, humanhuman

TSL 1 (best)

Gene SEMA4B, Length 3,751 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA4B-204ENST00000558065 NAP1L2Q9ULW6 460 aaPredicted RBP15.08■□□□□ 0
SEMA4B-204ENST00000558065 ZBTB47Q9UFB7 747 aaPredicted RBP15.06■□□□□ 0
SEMA4B-204ENST00000558065 GSE1Q14687 1217 aa15.03■□□□□ -0
SEMA4B-204ENST00000558065 GTF2E1P29083 439 aaPredicted RBP15.03■□□□□ -0
SEMA4B-204ENST00000558065 CHMP4BQ9H444 224 aaKnown RBP15.02□□□□□ -0.01
SEMA4B-204ENST00000558065 BBXQ8WY36 941 aaPredicted RBP15□□□□□ -0.01
SEMA4B-204ENST00000558065 CALD1Q05682 793 aaKnown RBP15□□□□□ -0.01
SEMA4B-204ENST00000558065 RGS3P49796 1198 aa15□□□□□ -0.01
SEMA4B-204ENST00000558065 ANP32AP39687 249 aaKnown RBP14.99□□□□□ -0.01
SEMA4B-204ENST00000558065 IRX6P78412 446 aaPredicted RBP14.98□□□□□ -0.01
SEMA4B-204ENST00000558065 HSP90AA1P07900 732 aaKnown RBP14.97□□□□□ -0.01
SEMA4B-204ENST00000558065 DHX37Q8IY37 1157 aaKnown RBP14.97□□□□□ -0.01
SEMA4B-204ENST00000558065 RRAGDQ9NQL2 400 aaPredicted RBP14.96□□□□□ -0.01
SEMA4B-204ENST00000558065 TRIM52Q96A61 297 aa14.96□□□□□ -0.01
SEMA4B-204ENST00000558065 DCAF11Q8TEB1 546 aa14.96□□□□□ -0.02
SEMA4B-204ENST00000558065 PPP4R2Q9NY27 417 aa14.95□□□□□ -0.02
SEMA4B-204ENST00000558065 WRNQ14191 1432 aaPredicted RBP eCLIP14.94□□□□□ -0.02
SEMA4B-204ENST00000558065 LAS1LQ9Y4W2 734 aaKnown RBP14.94□□□□□ -0.02
SEMA4B-204ENST00000558065 IPO4Q8TEX9 1081 aaKnown RBP14.93□□□□□ -0.02
SEMA4B-204ENST00000558065 FRAT1Q92837 279 aaPredicted RBP14.93□□□□□ -0.02
SEMA4B-204ENST00000558065 NAP1L5Q96NT1 182 aaPredicted RBP14.93□□□□□ -0.02
SEMA4B-204ENST00000558065 CENPJQ9HC77 1338 aaPredicted RBP14.93□□□□□ -0.02
SEMA4B-204ENST00000558065 STAC3Q96MF2 364 aa14.93□□□□□ -0.02
SEMA4B-204ENST00000558065 CHMP4AQ9BY43 222 aa14.92□□□□□ -0.02
SEMA4B-204ENST00000558065 BRD2P25440 801 aaKnown RBP14.91□□□□□ -0.02
SEMA4B-204ENST00000558065 NACADO15069 1562 aa14.9□□□□□ -0.02
SEMA4B-204ENST00000558065 ZNF326Q5BKZ1 582 aaKnown RBP14.88□□□□□ -0.03
SEMA4B-204ENST00000558065 ABCC9O60706 1549 aa14.88□□□□□ -0.03
SEMA4B-204ENST00000558065 FOXD1Q16676 465 aa14.86□□□□□ -0.03
SEMA4B-204ENST00000558065 PPM1GO15355 546 aaPredicted RBP14.85□□□□□ -0.03
SEMA4B-204ENST00000558065 ZCCHC6Q5VYS8 1495 aaKnown RBP14.85□□□□□ -0.03
SEMA4B-204ENST00000558065 B4GALNT3Q6L9W6 998 aa14.84□□□□□ -0.03
SEMA4B-204ENST00000558065 CANXP27824 592 aaKnown RBP14.81□□□□□ -0.04
SEMA4B-204ENST00000558065 SAMD1Q6SPF0 538 aaPredicted RBP14.8□□□□□ -0.04
SEMA4B-204ENST00000558065 PDCL3Q9H2J4 239 aa14.79□□□□□ -0.04
SEMA4B-204ENST00000558065 ZFP91Q96JP5 570 aaPredicted RBP14.79□□□□□ -0.04
SEMA4B-204ENST00000558065 CCER2I3L3R5 266 aa14.76□□□□□ -0.05
SEMA4B-204ENST00000558065 NFKBIBQ15653 356 aa14.75□□□□□ -0.05
SEMA4B-204ENST00000558065 EEA1Q15075 1411 aa14.75□□□□□ -0.05
SEMA4B-204ENST00000558065 PNNQ9H307 717 aaKnown RBP14.74□□□□□ -0.05
SEMA4B-204ENST00000558065 CHRM1P11229 460 aaPredicted RBP14.74□□□□□ -0.05
SEMA4B-204ENST00000558065 CLCN1P35523 988 aa14.73□□□□□ -0.05
SEMA4B-204ENST00000558065 NCAPD3P42695 1498 aa14.71□□□□□ -0.05
SEMA4B-204ENST00000558065 CNGB1Q14028 1251 aaPredicted RBP14.71□□□□□ -0.05
SEMA4B-204ENST00000558065 FTSJ3Q8IY81 847 aaKnown RBP14.7□□□□□ -0.06
SEMA4B-204ENST00000558065 ZNF830Q96NB3 372 aaPredicted RBP14.7□□□□□ -0.06
SEMA4B-204ENST00000558065 HNRNPUL2Q1KMD3 747 aaKnown RBP14.7□□□□□ -0.06
SEMA4B-204ENST00000558065 TEX2Q8IWB9 1127 aa14.69□□□□□ -0.06
SEMA4B-204ENST00000558065 TMEM51Q9NW97 253 aa14.69□□□□□ -0.06
SEMA4B-204ENST00000558065 PLPPR3Q6T4P5 718 aa14.68□□□□□ -0.06
SEMA4B-204ENST00000558065 SECISBP2LQ93073 1101 aaKnown RBP14.68□□□□□ -0.06
SEMA4B-204ENST00000558065 DHX57Q6P158 1386 aaKnown RBP14.67□□□□□ -0.06
SEMA4B-204ENST00000558065 DDRGK1Q96HY6 314 aa14.66□□□□□ -0.06
SEMA4B-204ENST00000558065 HOMEZQ8IX15 550 aa14.65□□□□□ -0.06
SEMA4B-204ENST00000558065 PLCD3Q8N3E9 789 aa14.65□□□□□ -0.06
SEMA4B-204ENST00000558065 PPP1R15AO75807 674 aaPredicted RBP14.64□□□□□ -0.07
SEMA4B-204ENST00000558065 DDX10Q13206 875 aaKnown RBP14.64□□□□□ -0.07
SEMA4B-204ENST00000558065 BAZ1BQ9UIG0 1483 aaKnown RBP14.64□□□□□ -0.07
SEMA4B-204ENST00000558065 PABPN1Q86U42 306 aaKnown RBP eCLIP14.63□□□□□ -0.07
SEMA4B-204ENST00000558065 HAP1P54257 671 aaPredicted RBP14.63□□□□□ -0.07
SEMA4B-204ENST00000558065 ZHX1Q9UKY1 873 aaPredicted RBP14.63□□□□□ -0.07
SEMA4B-204ENST00000558065 TULP1O00294 542 aaPredicted RBP14.62□□□□□ -0.07
SEMA4B-204ENST00000558065 NPM2Q86SE8 214 aaKnown RBP14.62□□□□□ -0.07
SEMA4B-204ENST00000558065 SMAP1Q8IYB5 467 aaPredicted RBP14.62□□□□□ -0.07
SEMA4B-204ENST00000558065 UBTFP17480 764 aaKnown RBP14.6□□□□□ -0.07
SEMA4B-204ENST00000558065 ARID4BQ4LE39 1312 aaPredicted RBP14.59□□□□□ -0.07
SEMA4B-204ENST00000558065 VGLL3A8MV65 326 aa14.57□□□□□ -0.08
SEMA4B-204ENST00000558065 TPM2P07951 284 aa14.57□□□□□ -0.08
SEMA4B-204ENST00000558065 HNRNPUQ00839 825 aaKnown RBP eCLIP14.57□□□□□ -0.08
SEMA4B-204ENST00000558065 CEP162Q5TB80 1403 aa14.57□□□□□ -0.08
SEMA4B-204ENST00000558065 RNF216Q9NWF9 866 aaPredicted RBP14.57□□□□□ -0.08
SEMA4B-204ENST00000558065 PEG3Q9GZU2 1588 aa14.56□□□□□ -0.08
SEMA4B-204ENST00000558065 UTP14CQ5TAP6 766 aaKnown RBP14.53□□□□□ -0.08
SEMA4B-204ENST00000558065 SIN3AQ96ST3 1273 aa14.53□□□□□ -0.08
SEMA4B-204ENST00000558065 FRAT2O75474 233 aaPredicted RBP14.52□□□□□ -0.08
SEMA4B-204ENST00000558065 NCLP19338 710 aaKnown RBP14.52□□□□□ -0.09
SEMA4B-204ENST00000558065 ANP32CO43423 234 aa14.52□□□□□ -0.09
SEMA4B-204ENST00000558065 BCCIPQ9P287 314 aaKnown RBP eCLIP14.52□□□□□ -0.09
SEMA4B-204ENST00000558065 SCRIBQ14160 1630 aa14.51□□□□□ -0.09
SEMA4B-204ENST00000558065 PPP4R3BQ5MIZ7 849 aa14.5□□□□□ -0.09
SEMA4B-204ENST00000558065 DHX30Q7L2E3 1194 aaKnown RBP eCLIP14.5□□□□□ -0.09
SEMA4B-204ENST00000558065 DMTNQ08495 405 aa14.5□□□□□ -0.09
SEMA4B-204ENST00000558065 CNKSR2Q8WXI2 1034 aa14.49□□□□□ -0.09
SEMA4B-204ENST00000558065 KCNG1Q9UIX4 513 aa14.48□□□□□ -0.09
SEMA4B-204ENST00000558065 RGS22Q8NE09 1264 aa14.47□□□□□ -0.09
SEMA4B-204ENST00000558065 BACH2Q9BYV9 841 aa14.47□□□□□ -0.09
SEMA4B-204ENST00000558065 PDE4AP27815 886 aa14.46□□□□□ -0.09
SEMA4B-204ENST00000558065 L1TD1Q5T7N2 865 aaKnown RBP14.46□□□□□ -0.09
SEMA4B-204ENST00000558065 POGKQ9P215 609 aa14.45□□□□□ -0.1
SEMA4B-204ENST00000558065 VGFO15240 615 aaPredicted RBP14.44□□□□□ -0.1
SEMA4B-204ENST00000558065 RIPK4P57078 832 aa14.43□□□□□ -0.1
SEMA4B-204ENST00000558065 PRDM10Q9NQV6 1147 aa14.43□□□□□ -0.1
SEMA4B-204ENST00000558065 ERBB4Q15303 1308 aa14.43□□□□□ -0.1
SEMA4B-204ENST00000558065 MAP7D2Q96T17 732 aa14.42□□□□□ -0.1
SEMA4B-204ENST00000558065 ZSCAN20P17040 1043 aaPredicted RBP14.42□□□□□ -0.1
SEMA4B-204ENST00000558065 CNPY4Q8N129 248 aa14.42□□□□□ -0.1
SEMA4B-204ENST00000558065 XRCC6P12956 609 aaKnown RBP eCLIP14.41□□□□□ -0.1
SEMA4B-204ENST00000558065 SLC4A3P48751 1232 aa14.4□□□□□ -0.1
SEMA4B-204ENST00000558065 WDR97A6NE52 1622 aa14.4□□□□□ -0.1
SEMA4B-204ENST00000558065 TCERG1O14776 1098 aaKnown RBP14.39□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms