RNA–Protein interactions for RNA: ENST00000557529.1

SHMT2-233, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,369 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-233ENST00000557529 MAGI1Q96QZ7 1491 aaPredicted RBP19.49■□□□□ 0.71
SHMT2-233ENST00000557529 SNAPC4Q5SXM2 1469 aa19.48■□□□□ 0.71
SHMT2-233ENST00000557529 PCGF6Q9BYE7 350 aa19.44■□□□□ 0.7
SHMT2-233ENST00000557529 EFCAB5A4FU69 1503 aa19.44■□□□□ 0.7
SHMT2-233ENST00000557529 APLP2Q06481 763 aa19.4■□□□□ 0.7
SHMT2-233ENST00000557529 SYNJ2O15056 1496 aa19.4■□□□□ 0.7
SHMT2-233ENST00000557529 GRIN2AQ12879 1464 aa19.39■□□□□ 0.69
SHMT2-233ENST00000557529 PPARGC1BQ86YN6 1023 aaKnown RBP19.35■□□□□ 0.69
SHMT2-233ENST00000557529 IQGAP2Q13576 1575 aa19.34■□□□□ 0.69
SHMT2-233ENST00000557529 CHMP7Q8WUX9 453 aaPredicted RBP19.34■□□□□ 0.69
SHMT2-233ENST00000557529 SAMD9Q5K651 1589 aa19.33■□□□□ 0.68
SHMT2-233ENST00000557529 KIAA0586Q9BVV6 1533 aa19.33■□□□□ 0.68
SHMT2-233ENST00000557529 FHOD3Q2V2M9 1422 aa19.3■□□□□ 0.68
SHMT2-233ENST00000557529 FMN1Q68DA7 1419 aa19.28■□□□□ 0.68
SHMT2-233ENST00000557529 P3H3Q8IVL6 736 aa19.28■□□□□ 0.68
SHMT2-233ENST00000557529 UGGT2Q9NYU1 1516 aa19.27■□□□□ 0.67
SHMT2-233ENST00000557529 NUP160Q12769 1436 aa19.26■□□□□ 0.67
SHMT2-233ENST00000557529 FBLN2P98095 1184 aa19.25■□□□□ 0.67
SHMT2-233ENST00000557529 MAP3K1Q13233 1512 aa19.25■□□□□ 0.67
SHMT2-233ENST00000557529 FYCO1Q9BQS8 1478 aa19.23■□□□□ 0.67
SHMT2-233ENST00000557529 CEP170Q5SW79 1584 aa19.22■□□□□ 0.67
SHMT2-233ENST00000557529 CASKIN1Q8WXD9 1431 aa19.22■□□□□ 0.67
SHMT2-233ENST00000557529 TTBK1Q5TCY1 1321 aaPredicted RBP19.2■□□□□ 0.66
SHMT2-233ENST00000557529 PCF11O94913 1555 aaKnown RBP19.2■□□□□ 0.66
SHMT2-233ENST00000557529 TIAM1Q13009 1591 aa19.17■□□□□ 0.66
SHMT2-233ENST00000557529 KIAA0556O60303 1618 aa19.14■□□□□ 0.65
SHMT2-233ENST00000557529 DISP1Q96F81 1524 aa19.13■□□□□ 0.65
SHMT2-233ENST00000557529 KANK4Q5T7N3 995 aaPredicted RBP19.13■□□□□ 0.65
SHMT2-233ENST00000557529 CFAP43Q8NDM7 1665 aa19.12■□□□□ 0.65
SHMT2-233ENST00000557529 JPH4Q96JJ6 628 aa19.1■□□□□ 0.65
SHMT2-233ENST00000557529 ATP1B4Q9UN42 357 aaPredicted RBP19.1■□□□□ 0.65
SHMT2-233ENST00000557529 CHD1O14646 1710 aa19.1■□□□□ 0.65
SHMT2-233ENST00000557529 CARMIL2Q6F5E8 1435 aa19.1■□□□□ 0.65
SHMT2-233ENST00000557529 LRRC9Q6ZRR7 1453 aa19.08■□□□□ 0.65
SHMT2-233ENST00000557529 HECW1Q76N89 1606 aa19.05■□□□□ 0.64
SHMT2-233ENST00000557529 CCDC18Q5T9S5 1454 aa19.04■□□□□ 0.64
SHMT2-233ENST00000557529 PRG4Q92954 1404 aaPredicted RBP18.97■□□□□ 0.63
SHMT2-233ENST00000557529 RRBP1Q9P2E9 1410 aaKnown RBP18.97■□□□□ 0.63
SHMT2-233ENST00000557529 SHROOM2Q13796 1616 aa18.97■□□□□ 0.63
SHMT2-233ENST00000557529 EPRSP07814 1512 aaKnown RBP18.96■□□□□ 0.63
SHMT2-233ENST00000557529 MTUS2Q5JR59 1369 aa18.96■□□□□ 0.63
SHMT2-233ENST00000557529 RAPGEF6Q8TEU7 1601 aa18.95■□□□□ 0.62
SHMT2-233ENST00000557529 LRRIQ1Q96JM4 1722 aa18.95■□□□□ 0.62
SHMT2-233ENST00000557529 EHBP1L1Q8N3D4 1523 aa18.94■□□□□ 0.62
SHMT2-233ENST00000557529 HRCP23327 699 aa18.93■□□□□ 0.62
SHMT2-233ENST00000557529 CLASP1Q7Z460 1538 aa18.93■□□□□ 0.62
SHMT2-233ENST00000557529 CCNB3Q8WWL7 1395 aa18.92■□□□□ 0.62
SHMT2-233ENST00000557529 NUP153P49790 1475 aaKnown RBP18.91■□□□□ 0.62
SHMT2-233ENST00000557529 PHLDB1Q86UU1 1377 aa18.89■□□□□ 0.61
SHMT2-233ENST00000557529 PTPRGP23470 1445 aa18.88■□□□□ 0.61
SHMT2-233ENST00000557529 PLB1Q6P1J6 1458 aa18.88■□□□□ 0.61
SHMT2-233ENST00000557529 CDK13Q14004 1512 aaKnown RBP18.87■□□□□ 0.61
SHMT2-233ENST00000557529 ABCA8O94911 1581 aa18.86■□□□□ 0.61
SHMT2-233ENST00000557529 SUPT6HQ7KZ85 1726 aaKnown RBP18.86■□□□□ 0.61
SHMT2-233ENST00000557529 CDK11AQ9UQ88 783 aaPredicted RBP18.86■□□□□ 0.61
SHMT2-233ENST00000557529 NCOA2Q15596 1464 aa18.84■□□□□ 0.61
SHMT2-233ENST00000557529 HNRNPUL2Q1KMD3 747 aaKnown RBP18.84■□□□□ 0.61
SHMT2-233ENST00000557529 MAGI3Q5TCQ9 1506 aa18.84■□□□□ 0.61
SHMT2-233ENST00000557529 ARHGEF11O15085 1522 aa18.82■□□□□ 0.6
SHMT2-233ENST00000557529 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.81■□□□□ 0.6
SHMT2-233ENST00000557529 ARID3CA6NKF2 412 aa18.8■□□□□ 0.6
SHMT2-233ENST00000557529 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.8■□□□□ 0.6
SHMT2-233ENST00000557529 ZEB1P37275 1124 aaPredicted RBP18.8■□□□□ 0.6
SHMT2-233ENST00000557529 MYOM3Q5VTT5 1437 aa18.79■□□□□ 0.6
SHMT2-233ENST00000557529 FGD6Q6ZV73 1430 aa18.79■□□□□ 0.6
SHMT2-233ENST00000557529 UACAQ9BZF9 1416 aa18.78■□□□□ 0.6
SHMT2-233ENST00000557529 OSCARQ8IYS5 282 aa18.77■□□□□ 0.6
SHMT2-233ENST00000557529 ERCC6L2Q5T890 1561 aa18.77■□□□□ 0.59
SHMT2-233ENST00000557529 TROQ12816 1431 aaPredicted RBP18.76■□□□□ 0.59
SHMT2-233ENST00000557529 FAM50AQ14320 339 aaKnown RBP18.74■□□□□ 0.59
SHMT2-233ENST00000557529 ATP10BO94823 1461 aa18.74■□□□□ 0.59
SHMT2-233ENST00000557529 CCER1Q8TC90 406 aaPredicted RBP18.71■□□□□ 0.59
SHMT2-233ENST00000557529 MIA2Q96PC5 1412 aa18.71■□□□□ 0.59
SHMT2-233ENST00000557529 ABCC2Q92887 1545 aa18.71■□□□□ 0.59
SHMT2-233ENST00000557529 PLEKHD1A6NEE1 506 aa18.7■□□□□ 0.58
SHMT2-233ENST00000557529 UHRF1BP1LA0JNW5 1464 aa18.68■□□□□ 0.58
SHMT2-233ENST00000557529 ADCY10Q96PN6 1610 aa18.68■□□□□ 0.58
SHMT2-233ENST00000557529 TCOF1Q13428 1488 aaKnown RBP18.68■□□□□ 0.58
SHMT2-233ENST00000557529 ITGAEP38570 1179 aa18.68■□□□□ 0.58
SHMT2-233ENST00000557529 PTPN23Q9H3S7 1636 aa18.66■□□□□ 0.58
SHMT2-233ENST00000557529 KIF14Q15058 1648 aa18.63■□□□□ 0.57
SHMT2-233ENST00000557529 ITSN2Q9NZM3 1697 aa18.6■□□□□ 0.57
SHMT2-233ENST00000557529 SETD5Q9C0A6 1442 aa18.58■□□□□ 0.57
SHMT2-233ENST00000557529 KDM5BQ9UGL1 1544 aa18.58■□□□□ 0.57
SHMT2-233ENST00000557529 GPATCH8Q9UKJ3 1502 aaKnown RBP18.58■□□□□ 0.56
SHMT2-233ENST00000557529 ABCC10Q5T3U5 1492 aa18.57■□□□□ 0.56
SHMT2-233ENST00000557529 CFDP1Q9UEE9 299 aaPredicted RBP18.55■□□□□ 0.56
SHMT2-233ENST00000557529 ZCCHC11Q5TAX3 1644 aaKnown RBP18.54■□□□□ 0.56
SHMT2-233ENST00000557529 RAB3GAP2Q9H2M9 1393 aa18.54■□□□□ 0.56
SHMT2-233ENST00000557529 PTPRKQ15262 1439 aa18.52■□□□□ 0.55
SHMT2-233ENST00000557529 CLSPNQ9HAW4 1339 aa18.51■□□□□ 0.55
SHMT2-233ENST00000557529 HFM1A2PYH4 1435 aa18.51■□□□□ 0.55
SHMT2-233ENST00000557529 DHX57Q6P158 1386 aaKnown RBP18.5■□□□□ 0.55
SHMT2-233ENST00000557529 AKNAQ7Z591 1439 aa18.49■□□□□ 0.55
SHMT2-233ENST00000557529 CAMSAP2Q08AD1 1489 aa18.49■□□□□ 0.55
SHMT2-233ENST00000557529 DNMT1P26358 1616 aaKnown RBP18.48■□□□□ 0.55
SHMT2-233ENST00000557529 CDC42BPAQ5VT25 1732 aa18.48■□□□□ 0.55
SHMT2-233ENST00000557529 DAPK1P53355 1430 aa18.47■□□□□ 0.55
SHMT2-233ENST00000557529 ZNF644Q9H582 1327 aaPredicted RBP18.46■□□□□ 0.55
SHMT2-233ENST00000557529 ABCC5O15440 1437 aa18.44■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 117.7 ms