RNA–Protein interactions for RNA: ENST00000554659.5

VTI1B-204, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VTI1B, Length 5,351 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-204ENST00000554659 KDM2AQ9Y2K7 1162 aa18.5■□□□□ 0.55
VTI1B-204ENST00000554659 STAG3Q9UJ98 1225 aa18.5■□□□□ 0.55
VTI1B-204ENST00000554659 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.5■□□□□ 0.551e-8■■□□□ 14.2
VTI1B-204ENST00000554659 ESF1Q9H501 851 aaKnown RBP18.49■□□□□ 0.55
VTI1B-204ENST00000554659 TNIKQ9UKE5 1360 aa18.48■□□□□ 0.55
VTI1B-204ENST00000554659 ANP32EQ9BTT0 268 aa18.47■□□□□ 0.55
VTI1B-204ENST00000554659 RRP7BPQ9NSQ0 103 aa18.43■□□□□ 0.54
VTI1B-204ENST00000554659 BECN1Q14457 450 aa18.43■□□□□ 0.54
VTI1B-204ENST00000554659 CEP164Q9UPV0 1460 aa18.4■□□□□ 0.54
VTI1B-204ENST00000554659 WRNQ14191 1432 aaPredicted RBP eCLIP18.4■□□□□ 0.54
VTI1B-204ENST00000554659 MYH16Q9H6N6 1097 aa18.39■□□□□ 0.53
VTI1B-204ENST00000554659 NPM1P06748 294 aaKnown RBP eCLIP18.39■□□□□ 0.53
VTI1B-204ENST00000554659 TRIM44Q96DX7 344 aaPredicted RBP18.38■□□□□ 0.53
VTI1B-204ENST00000554659 SUPT16HQ9Y5B9 1047 aaKnown RBP18.36■□□□□ 0.53
VTI1B-204ENST00000554659 PPP4R2Q9NY27 417 aa18.32■□□□□ 0.52
VTI1B-204ENST00000554659 PPM1GO15355 546 aaPredicted RBP18.31■□□□□ 0.52
VTI1B-204ENST00000554659 KIF27Q86VH2 1401 aa18.3■□□□□ 0.52
VTI1B-204ENST00000554659 RB1CC1Q8TDY2 1594 aa18.3■□□□□ 0.52
VTI1B-204ENST00000554659 TNNT2P45379 298 aaPredicted RBP18.29■□□□□ 0.52
VTI1B-204ENST00000554659 CHMP7Q8WUX9 453 aaPredicted RBP18.28■□□□□ 0.52
VTI1B-204ENST00000554659 CDCA8Q53HL2 280 aa18.28■□□□□ 0.52
VTI1B-204ENST00000554659 CDK11BP21127 795 aaKnown RBP18.28■□□□□ 0.52
VTI1B-204ENST00000554659 GOLGA6L22H0YM25 854 aa18.27■□□□□ 0.51
VTI1B-204ENST00000554659 NCLP19338 710 aaKnown RBP18.25■□□□□ 0.51
VTI1B-204ENST00000554659 KNSTRNQ9Y448 316 aa18.23■□□□□ 0.51
VTI1B-204ENST00000554659 PLEKHD1A6NEE1 506 aa18.23■□□□□ 0.51
VTI1B-204ENST00000554659 CFAP53Q96M91 514 aa18.23■□□□□ 0.51
VTI1B-204ENST00000554659 CARD11Q9BXL7 1154 aa18.23■□□□□ 0.51
VTI1B-204ENST00000554659 TIMELESSQ9UNS1 1208 aa18.21■□□□□ 0.51
VTI1B-204ENST00000554659 SIN3AQ96ST3 1273 aa18.2■□□□□ 0.5
VTI1B-204ENST00000554659 NOP58Q9Y2X3 529 aaKnown RBP18.2■□□□□ 0.5
VTI1B-204ENST00000554659 ERICH6BQ5W0A0 696 aa18.2■□□□□ 0.5
VTI1B-204ENST00000554659 RTN4Q9NQC3 1192 aaKnown RBP18.2■□□□□ 0.5
VTI1B-204ENST00000554659 PTMAP06454 111 aaKnown RBP18.2■□□□□ 0.5
VTI1B-204ENST00000554659 BAZ1BQ9UIG0 1483 aaKnown RBP18.19■□□□□ 0.5
VTI1B-204ENST00000554659 RGL3Q3MIN7 710 aa18.19■□□□□ 0.5
VTI1B-204ENST00000554659 CCNB3Q8WWL7 1395 aa18.19■□□□□ 0.5
VTI1B-204ENST00000554659 CFDP1Q9UEE9 299 aaPredicted RBP18.18■□□□□ 0.5
VTI1B-204ENST00000554659 NACADO15069 1562 aa18.17■□□□□ 0.5
VTI1B-204ENST00000554659 DNTTIP2Q5QJE6 756 aaKnown RBP18.17■□□□□ 0.5
VTI1B-204ENST00000554659 CCER2I3L3R5 266 aa18.16■□□□□ 0.5
VTI1B-204ENST00000554659 NAP1L5Q96NT1 182 aaPredicted RBP18.16■□□□□ 0.5
VTI1B-204ENST00000554659 FTSJ3Q8IY81 847 aaKnown RBP18.13■□□□□ 0.49
VTI1B-204ENST00000554659 FHAD1B1AJZ9 1412 aa18.13■□□□□ 0.49
VTI1B-204ENST00000554659 CASC1Q6TDU7 716 aa18.11■□□□□ 0.49
VTI1B-204ENST00000554659 SENP3-EIF4A1A0A087X0R7 540 aa18.11■□□□□ 0.49
VTI1B-204ENST00000554659 BAZ1AQ9NRL2 1556 aaPredicted RBP18.1■□□□□ 0.49
VTI1B-204ENST00000554659 LAS1LQ9Y4W2 734 aaKnown RBP18.1■□□□□ 0.49
VTI1B-204ENST00000554659 PLPPR3Q6T4P5 718 aa18.1■□□□□ 0.49
VTI1B-204ENST00000554659 B4GALNT3Q6L9W6 998 aa18.08■□□□□ 0.48
VTI1B-204ENST00000554659 TPRNQ4KMQ1 711 aa18.08■□□□□ 0.48
VTI1B-204ENST00000554659 KCNH8Q96L42 1107 aa18.07■□□□□ 0.48
VTI1B-204ENST00000554659 ZRSR1Q15695 479 aaKnown RBP18.07■□□□□ 0.48
VTI1B-204ENST00000554659 RGS3P49796 1198 aa18.06■□□□□ 0.48
VTI1B-204ENST00000554659 PPP1R15AO75807 674 aaPredicted RBP18.05■□□□□ 0.48
VTI1B-204ENST00000554659 MAPK8IP3Q9UPT6 1336 aa18.05■□□□□ 0.48
VTI1B-204ENST00000554659 MS4A1P11836 297 aa18.04■□□□□ 0.48
VTI1B-204ENST00000554659 VPS8Q8N3P4 1428 aa18.04■□□□□ 0.48
VTI1B-204ENST00000554659 CHMP4BQ9H444 224 aaKnown RBP18.04■□□□□ 0.48
VTI1B-204ENST00000554659 NUDCQ9Y266 331 aa18.04■□□□□ 0.48
VTI1B-204ENST00000554659 SETD5Q9C0A6 1442 aa18.03■□□□□ 0.48
VTI1B-204ENST00000554659 SOGA1O94964 1423 aa18.02■□□□□ 0.47
VTI1B-204ENST00000554659 RBM19Q9Y4C8 960 aaKnown RBP18.01■□□□□ 0.47
VTI1B-204ENST00000554659 NEUROD2Q15784 382 aa18.01■□□□□ 0.47
VTI1B-204ENST00000554659 FRAT1Q92837 279 aaPredicted RBP17.99■□□□□ 0.47
VTI1B-204ENST00000554659 PLCB2Q00722 1185 aa17.99■□□□□ 0.47
VTI1B-204ENST00000554659 CC2D1BQ5T0F9 858 aaKnown RBP17.99■□□□□ 0.47
VTI1B-204ENST00000554659 TMF1P82094 1093 aa17.98■□□□□ 0.47
VTI1B-204ENST00000554659 CARMIL1Q5VZK9 1371 aa17.95■□□□□ 0.46
VTI1B-204ENST00000554659 A0A0G2JS52 829 aa17.95■□□□□ 0.46
VTI1B-204ENST00000554659 HSPA5P11021 654 aaKnown RBP17.94■□□□□ 0.46
VTI1B-204ENST00000554659 HSP90AB1P08238 724 aaKnown RBP17.94■□□□□ 0.46
VTI1B-204ENST00000554659 CECR2Q9BXF3 1484 aa17.94■□□□□ 0.46
VTI1B-204ENST00000554659 ARHGAP35Q9NRY4 1499 aa17.94■□□□□ 0.46
VTI1B-204ENST00000554659 C14orf37Q86TY3 774 aa17.93■□□□□ 0.46
VTI1B-204ENST00000554659 DEKP35659 375 aaKnown RBP17.93■□□□□ 0.46
VTI1B-204ENST00000554659 PNNQ9H307 717 aaKnown RBP17.92■□□□□ 0.46
VTI1B-204ENST00000554659 SENP3Q9H4L4 574 aaPredicted RBP17.92■□□□□ 0.46
VTI1B-204ENST00000554659 DCAF11Q8TEB1 546 aa17.92■□□□□ 0.46
VTI1B-204ENST00000554659 ZBTB7CA1YPR0 619 aa17.91■□□□□ 0.46
VTI1B-204ENST00000554659 L1TD1Q5T7N2 865 aaKnown RBP17.9■□□□□ 0.46
VTI1B-204ENST00000554659 CUX2O14529 1486 aa17.9■□□□□ 0.46
VTI1B-204ENST00000554659 HSCBQ8IWL3 235 aa17.89■□□□□ 0.45
VTI1B-204ENST00000554659 PLEKHG5O94827 1062 aa17.88■□□□□ 0.45
VTI1B-204ENST00000554659 POGKQ9P215 609 aa17.87■□□□□ 0.45
VTI1B-204ENST00000554659 KTN1Q86UP2 1357 aaKnown RBP17.86■□□□□ 0.45
VTI1B-204ENST00000554659 RAB3GAP2Q9H2M9 1393 aa17.85■□□□□ 0.45
VTI1B-204ENST00000554659 U2SURPO15042 1029 aaKnown RBP17.85■□□□□ 0.45
VTI1B-204ENST00000554659 TULP1O00294 542 aaPredicted RBP17.85■□□□□ 0.45
VTI1B-204ENST00000554659 KANK4Q5T7N3 995 aaPredicted RBP17.85■□□□□ 0.45
VTI1B-204ENST00000554659 AMER1Q5JTC6 1135 aaPredicted RBP17.83■□□□□ 0.45
VTI1B-204ENST00000554659 CFAP44Q96MT7 982 aa17.83■□□□□ 0.44
VTI1B-204ENST00000554659 TCERG1O14776 1098 aaKnown RBP17.82■□□□□ 0.44
VTI1B-204ENST00000554659 GOLGA6L6A8MZA4 724 aa17.82■□□□□ 0.44
VTI1B-204ENST00000554659 RALBP1Q15311 655 aa17.81■□□□□ 0.44
VTI1B-204ENST00000554659 TSHZ2Q9NRE2 1034 aa17.81■□□□□ 0.44
VTI1B-204ENST00000554659 TAOK2Q9UL54 1235 aa17.81■□□□□ 0.44
VTI1B-204ENST00000554659 KANK1Q14678 1352 aa17.81■□□□□ 0.44
VTI1B-204ENST00000554659 EIF4G1Q04637 1599 aaKnown RBP17.8■□□□□ 0.44
VTI1B-204ENST00000554659 RCAN3Q9UKA8 241 aa17.8■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms