RNA–Protein interactions for RNA: ENST00000553649.2

SMARCE1P3-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 pseudogene 3, humanhuman

BASIC

Gene SMARCE1P3, Length 1,231 nt, Biotype processed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1P3-201ENST00000553649 GALR2O43603 387 aaPredicted RBP12.28□□□□□ -0.44
SMARCE1P3-201ENST00000553649 TRIM41Q8WV44 630 aa12.25□□□□□ -0.45
SMARCE1P3-201ENST00000553649 STAG3Q9UJ98 1225 aa12.23□□□□□ -0.45
SMARCE1P3-201ENST00000553649 SPDYE4A6NLX3 237 aa12.21□□□□□ -0.45
SMARCE1P3-201ENST00000553649 POTEB2H3BUK9 544 aa12.19□□□□□ -0.46
SMARCE1P3-201ENST00000553649 PHF12Q96QT6 1004 aa12.19□□□□□ -0.46
SMARCE1P3-201ENST00000553649 MNX1P50219 401 aaPredicted RBP12.18□□□□□ -0.46
SMARCE1P3-201ENST00000553649 OTUD5Q96G74 571 aa12.16□□□□□ -0.46
SMARCE1P3-201ENST00000553649 PELP1Q8IZL8 1130 aaKnown RBP12.12□□□□□ -0.47
SMARCE1P3-201ENST00000553649 EHMT2Q96KQ7 1210 aa12.11□□□□□ -0.47
SMARCE1P3-201ENST00000553649 PAK3O75914 559 aaPredicted RBP12.05□□□□□ -0.48
SMARCE1P3-201ENST00000553649 NPM1P06748 294 aaKnown RBP eCLIP12.02□□□□□ -0.49
SMARCE1P3-201ENST00000553649 ERCC6Q03468 1493 aa12.02□□□□□ -0.49
SMARCE1P3-201ENST00000553649 MS4A3Q96HJ5 214 aa12□□□□□ -0.49
SMARCE1P3-201ENST00000553649 POTEJP0CG39 1038 aa11.98□□□□□ -0.49
SMARCE1P3-201ENST00000553649 ASTLQ6HA08 431 aaPredicted RBP11.96□□□□□ -0.49
SMARCE1P3-201ENST00000553649 ATMINO43313 823 aaPredicted RBP11.95□□□□□ -0.5
SMARCE1P3-201ENST00000553649 DCAF1Q9Y4B6 1507 aa11.94□□□□□ -0.5
SMARCE1P3-201ENST00000553649 PROM2Q8N271 834 aa11.93□□□□□ -0.5
SMARCE1P3-201ENST00000553649 SCRIBQ14160 1630 aa11.93□□□□□ -0.5
SMARCE1P3-201ENST00000553649 METRNQ9UJH8 293 aa11.92□□□□□ -0.5
SMARCE1P3-201ENST00000553649 POTEMA6NI47 508 aa11.91□□□□□ -0.5
SMARCE1P3-201ENST00000553649 TSPYL2Q9H2G4 693 aaPredicted RBP11.88□□□□□ -0.51
SMARCE1P3-201ENST00000553649 POTEGQ6S5H5 508 aa11.87□□□□□ -0.51
SMARCE1P3-201ENST00000553649 CCDC61Q9Y6R9 512 aa11.87□□□□□ -0.51
SMARCE1P3-201ENST00000553649 C7P10643 843 aa11.86□□□□□ -0.51
SMARCE1P3-201ENST00000553649 SLC39A7Q92504 469 aa11.86□□□□□ -0.51
SMARCE1P3-201ENST00000553649 ZCCHC6Q5VYS8 1495 aaKnown RBP11.85□□□□□ -0.51
SMARCE1P3-201ENST00000553649 ATN1P54259 1190 aaPredicted RBP11.84□□□□□ -0.51
SMARCE1P3-201ENST00000553649 KIF12Q96FN5 646 aa11.83□□□□□ -0.52
SMARCE1P3-201ENST00000553649 TRPC6Q9Y210 931 aa11.83□□□□□ -0.52
SMARCE1P3-201ENST00000553649 POTEFA5A3E0 1075 aa11.81□□□□□ -0.52
SMARCE1P3-201ENST00000553649 LCE2DQ5TA82 110 aaPredicted RBP11.81□□□□□ -0.52
SMARCE1P3-201ENST00000553649 BMP2KQ9NSY1 1161 aaPredicted RBP11.77□□□□□ -0.53
SMARCE1P3-201ENST00000553649 THOC2Q8NI27 1593 aaKnown RBP11.75□□□□□ -0.53
SMARCE1P3-201ENST00000553649 NESP48681 1621 aa11.75□□□□□ -0.53
SMARCE1P3-201ENST00000553649 MAP3K13O43283 966 aa11.74□□□□□ -0.53
SMARCE1P3-201ENST00000553649 RASEFQ8IZ41 740 aa11.74□□□□□ -0.53
SMARCE1P3-201ENST00000553649 PCDH10Q9P2E7 1040 aa11.72□□□□□ -0.53
SMARCE1P3-201ENST00000553649 MAMSTRQ6ZN01 415 aa11.71□□□□□ -0.53
SMARCE1P3-201ENST00000553649 NCAPD3P42695 1498 aa11.69□□□□□ -0.54
SMARCE1P3-201ENST00000553649 MIER1Q8N108 512 aa11.67□□□□□ -0.54
SMARCE1P3-201ENST00000553649 FAM163AQ96GL9 167 aaPredicted RBP11.67□□□□□ -0.54
SMARCE1P3-201ENST00000553649 TIE1P35590 1138 aa11.66□□□□□ -0.54
SMARCE1P3-201ENST00000553649 COLQQ9Y215 455 aaPredicted RBP11.66□□□□□ -0.54
SMARCE1P3-201ENST00000553649 SCUBE2Q9NQ36 999 aa11.64□□□□□ -0.55
SMARCE1P3-201ENST00000553649 TTLL13PA6NNM8 815 aa11.63□□□□□ -0.55
SMARCE1P3-201ENST00000553649 SMARCA2P51531 1590 aa11.59□□□□□ -0.55
SMARCE1P3-201ENST00000553649 BAZ1AQ9NRL2 1556 aaPredicted RBP11.56□□□□□ -0.56
SMARCE1P3-201ENST00000553649 PLEKHG5O94827 1062 aa11.55□□□□□ -0.56
SMARCE1P3-201ENST00000553649 NUBP1P53384 320 aa11.55□□□□□ -0.56
SMARCE1P3-201ENST00000553649 TRIM35Q9UPQ4 493 aa11.55□□□□□ -0.56
SMARCE1P3-201ENST00000553649 ATAD2BQ9ULI0 1458 aa11.53□□□□□ -0.56
SMARCE1P3-201ENST00000553649 SEC24BO95487 1268 aa11.52□□□□□ -0.57
SMARCE1P3-201ENST00000553649 PCDHB13Q9Y5F0 798 aa11.52□□□□□ -0.57
SMARCE1P3-201ENST00000553649 RIMBP3CA6NJZ7 1639 aa11.51□□□□□ -0.57
SMARCE1P3-201ENST00000553649 RIMBP3BA6NNM3 1639 aa11.51□□□□□ -0.57
SMARCE1P3-201ENST00000553649 RIMBP3Q9UFD9 1639 aa11.51□□□□□ -0.57
SMARCE1P3-201ENST00000553649 PLCD3Q8N3E9 789 aa11.51□□□□□ -0.57
SMARCE1P3-201ENST00000553649 SGIP1Q9BQI5 828 aa11.51□□□□□ -0.57
SMARCE1P3-201ENST00000553649 IFNL1Q8IU54 200 aa11.5□□□□□ -0.57
SMARCE1P3-201ENST00000553649 IER5LQ5T953 404 aa11.49□□□□□ -0.57
SMARCE1P3-201ENST00000553649 HMGXB3Q12766 1538 aa11.49□□□□□ -0.57
SMARCE1P3-201ENST00000553649 LAMC3Q9Y6N6 1575 aa11.47□□□□□ -0.57
SMARCE1P3-201ENST00000553649 KIF21AQ7Z4S6 1674 aa11.46□□□□□ -0.57
SMARCE1P3-201ENST00000553649 PDS5BQ9NTI5 1447 aa11.45□□□□□ -0.58
SMARCE1P3-201ENST00000553649 ARHGEF11O15085 1522 aa11.43□□□□□ -0.58
SMARCE1P3-201ENST00000553649 WDR62O43379 1518 aa11.42□□□□□ -0.58
SMARCE1P3-201ENST00000553649 TMEM106CQ9BVX2 250 aa11.42□□□□□ -0.58
SMARCE1P3-201ENST00000553649 MRC2Q9UBG0 1479 aa11.42□□□□□ -0.58
SMARCE1P3-201ENST00000553649 ILDR1Q86SU0 546 aaPredicted RBP11.41□□□□□ -0.58
SMARCE1P3-201ENST00000553649 CDAN1Q8IWY9 1227 aa11.41□□□□□ -0.58
SMARCE1P3-201ENST00000553649 SLAIN1Q8ND83 568 aa11.4□□□□□ -0.58
SMARCE1P3-201ENST00000553649 ST18O60284 1047 aa11.39□□□□□ -0.59
SMARCE1P3-201ENST00000553649 IRX5P78411 483 aaPredicted RBP11.39□□□□□ -0.59
SMARCE1P3-201ENST00000553649 CYB5RLQ6IPT4 315 aa11.38□□□□□ -0.59
SMARCE1P3-201ENST00000553649 ZBTB47Q9UFB7 747 aaPredicted RBP11.37□□□□□ -0.59
SMARCE1P3-201ENST00000553649 FAM212AQ96EL1 285 aa11.36□□□□□ -0.59
SMARCE1P3-201ENST00000553649 PLCG2P16885 1265 aa11.34□□□□□ -0.59
SMARCE1P3-201ENST00000553649 BAZ1BQ9UIG0 1483 aaKnown RBP11.33□□□□□ -0.6
SMARCE1P3-201ENST00000553649 PYGBP11216 843 aa11.3□□□□□ -0.6
SMARCE1P3-201ENST00000553649 SMARCA4P51532 1647 aa11.3□□□□□ -0.6
SMARCE1P3-201ENST00000553649 PEG3Q9GZU2 1588 aa11.29□□□□□ -0.6
SMARCE1P3-201ENST00000553649 FKBP8Q14318 412 aa11.29□□□□□ -0.6
SMARCE1P3-201ENST00000553649 ARAP1Q96P48 1450 aa11.29□□□□□ -0.6
SMARCE1P3-201ENST00000553649 OCEL1Q9H607 264 aa11.28□□□□□ -0.6
SMARCE1P3-201ENST00000553649 PCDHB8Q9UN66 801 aa11.28□□□□□ -0.6
SMARCE1P3-201ENST00000553649 CADPSQ9ULU8 1353 aa11.28□□□□□ -0.6
SMARCE1P3-201ENST00000553649 DCAF8Q5TAQ9 597 aa11.27□□□□□ -0.61
SMARCE1P3-201ENST00000553649 CEP164Q9UPV0 1460 aa11.19□□□□□ -0.62
SMARCE1P3-201ENST00000553649 PDCD7Q8N8D1 485 aaKnown RBP11.19□□□□□ -0.62
SMARCE1P3-201ENST00000553649 MARVELD3Q96A59 401 aa11.18□□□□□ -0.62
SMARCE1P3-201ENST00000553649 SPNS2Q8IVW8 549 aa11.17□□□□□ -0.62
SMARCE1P3-201ENST00000553649 TMEM121BQ9BXQ6 578 aaPredicted RBP11.17□□□□□ -0.62
SMARCE1P3-201ENST00000553649 MMRN1Q13201 1228 aa11.16□□□□□ -0.62
SMARCE1P3-201ENST00000553649 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.16□□□□□ -0.62
SMARCE1P3-201ENST00000553649 FANCD2Q9BXW9 1451 aa11.13□□□□□ -0.63
SMARCE1P3-201ENST00000553649 URB2Q14146 1524 aaKnown RBP11.12□□□□□ -0.63
SMARCE1P3-201ENST00000553649 ZNF608Q9ULD9 1512 aaPredicted RBP11.12□□□□□ -0.63
SMARCE1P3-201ENST00000553649 RSF1Q96T23 1441 aaPredicted RBP11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 379.8 ms