RNA–Protein interactions for RNA: ENST00000545694.1

SYNE1-239, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 526 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-239ENST00000545694 PROM2Q8N271 834 aa10.73□□□□□ -0.69
SYNE1-239ENST00000545694 DCBLD2Q96PD2 775 aa10.73□□□□□ -0.69
SYNE1-239ENST00000545694 NPM1P06748 294 aaKnown RBP eCLIP10.72□□□□□ -0.69
SYNE1-239ENST00000545694 PAK3O75914 559 aaPredicted RBP10.71□□□□□ -0.69
SYNE1-239ENST00000545694 PHF12Q96QT6 1004 aa10.71□□□□□ -0.69
SYNE1-239ENST00000545694 GALR2O43603 387 aaPredicted RBP10.7□□□□□ -0.7
SYNE1-239ENST00000545694 RSF1Q96T23 1441 aaPredicted RBP10.66□□□□□ -0.7
SYNE1-239ENST00000545694 BAZ1AQ9NRL2 1556 aaPredicted RBP10.65□□□□□ -0.7
SYNE1-239ENST00000545694 BICRAQ9NZM4 1560 aa10.63□□□□□ -0.71
SYNE1-239ENST00000545694 TSPYL2Q9H2G4 693 aaPredicted RBP10.6□□□□□ -0.71
SYNE1-239ENST00000545694 MIER1Q8N108 512 aa10.59□□□□□ -0.71
SYNE1-239ENST00000545694 CECR2Q9BXF3 1484 aa10.57□□□□□ -0.72
SYNE1-239ENST00000545694 SMARCA4P51532 1647 aa10.56□□□□□ -0.72
SYNE1-239ENST00000545694 MROH2BQ7Z745 1585 aa10.56□□□□□ -0.72
SYNE1-239ENST00000545694 MS4A3Q96HJ5 214 aa10.54□□□□□ -0.72
SYNE1-239ENST00000545694 PLEKHG5O94827 1062 aa10.52□□□□□ -0.73
SYNE1-239ENST00000545694 FKBP8Q14318 412 aa10.52□□□□□ -0.73
SYNE1-239ENST00000545694 PELP1Q8IZL8 1130 aaKnown RBP10.52□□□□□ -0.73
SYNE1-239ENST00000545694 PEG3Q9GZU2 1588 aa10.5□□□□□ -0.73
SYNE1-239ENST00000545694 PLCD3Q8N3E9 789 aa10.49□□□□□ -0.73
SYNE1-239ENST00000545694 CCDC61Q9Y6R9 512 aa10.49□□□□□ -0.73
SYNE1-239ENST00000545694 WIZO95785 1651 aa10.48□□□□□ -0.73
SYNE1-239ENST00000545694 RASEFQ8IZ41 740 aa10.48□□□□□ -0.73
SYNE1-239ENST00000545694 POTEB2H3BUK9 544 aa10.46□□□□□ -0.73
SYNE1-239ENST00000545694 TOP2AP11388 1531 aaKnown RBP10.45□□□□□ -0.74
SYNE1-239ENST00000545694 KIF12Q96FN5 646 aa10.45□□□□□ -0.74
SYNE1-239ENST00000545694 ATMINO43313 823 aaPredicted RBP10.44□□□□□ -0.74
SYNE1-239ENST00000545694 ASTLQ6HA08 431 aaPredicted RBP10.43□□□□□ -0.74
SYNE1-239ENST00000545694 SMARCA2P51531 1590 aa10.43□□□□□ -0.74
SYNE1-239ENST00000545694 OTUD5Q96G74 571 aa10.41□□□□□ -0.74
SYNE1-239ENST00000545694 MAP3K13O43283 966 aa10.4□□□□□ -0.74
SYNE1-239ENST00000545694 METRNQ9UJH8 293 aa10.39□□□□□ -0.75
SYNE1-239ENST00000545694 TRPC6Q9Y210 931 aa10.39□□□□□ -0.75
SYNE1-239ENST00000545694 ATN1P54259 1190 aaPredicted RBP10.38□□□□□ -0.75
SYNE1-239ENST00000545694 SLC39A7Q92504 469 aa10.36□□□□□ -0.75
SYNE1-239ENST00000545694 C7P10643 843 aa10.35□□□□□ -0.75
SYNE1-239ENST00000545694 NUBP1P53384 320 aa10.35□□□□□ -0.75
SYNE1-239ENST00000545694 ATAD2BQ9ULI0 1458 aa10.35□□□□□ -0.75
SYNE1-239ENST00000545694 BMP2KQ9NSY1 1161 aaPredicted RBP10.34□□□□□ -0.75
SYNE1-239ENST00000545694 ZBTB47Q9UFB7 747 aaPredicted RBP10.33□□□□□ -0.76
SYNE1-239ENST00000545694 EIF4G1Q04637 1599 aaKnown RBP10.32□□□□□ -0.76
SYNE1-239ENST00000545694 POTEJP0CG39 1038 aa10.31□□□□□ -0.76
SYNE1-239ENST00000545694 HMGXB3Q12766 1538 aa10.31□□□□□ -0.76
SYNE1-239ENST00000545694 BAZ1BQ9UIG0 1483 aaKnown RBP10.3□□□□□ -0.76
SYNE1-239ENST00000545694 CCDC88BA6NC98 1476 aa10.3□□□□□ -0.76
SYNE1-239ENST00000545694 PCDHB13Q9Y5F0 798 aa10.29□□□□□ -0.76
SYNE1-239ENST00000545694 NCAPD3P42695 1498 aa10.29□□□□□ -0.76
SYNE1-239ENST00000545694 TIE1P35590 1138 aa10.27□□□□□ -0.77
SYNE1-239ENST00000545694 FAM212AQ96EL1 285 aa10.26□□□□□ -0.77
SYNE1-239ENST00000545694 POTEFA5A3E0 1075 aa10.25□□□□□ -0.77
SYNE1-239ENST00000545694 TTLL13PA6NNM8 815 aa10.25□□□□□ -0.77
SYNE1-239ENST00000545694 FBXO3Q9UK99 471 aa10.24□□□□□ -0.77
SYNE1-239ENST00000545694 DCAF8Q5TAQ9 597 aa10.23□□□□□ -0.77
SYNE1-239ENST00000545694 IFNL1Q8IU54 200 aa10.23□□□□□ -0.77
SYNE1-239ENST00000545694 SGIP1Q9BQI5 828 aa10.22□□□□□ -0.77
SYNE1-239ENST00000545694 MAMSTRQ6ZN01 415 aa10.2□□□□□ -0.78
SYNE1-239ENST00000545694 COLQQ9Y215 455 aaPredicted RBP10.2□□□□□ -0.78
SYNE1-239ENST00000545694 SEC24BO95487 1268 aa10.19□□□□□ -0.78
SYNE1-239ENST00000545694 TRIM41Q8WV44 630 aa10.19□□□□□ -0.78
SYNE1-239ENST00000545694 TRIM35Q9UPQ4 493 aa10.19□□□□□ -0.78
SYNE1-239ENST00000545694 PYGBP11216 843 aa10.18□□□□□ -0.78
SYNE1-239ENST00000545694 KLHL34Q8N239 644 aa10.18□□□□□ -0.78
SYNE1-239ENST00000545694 TMEM106CQ9BVX2 250 aa10.17□□□□□ -0.78
SYNE1-239ENST00000545694 VASPP50552 380 aaPredicted RBP10.16□□□□□ -0.78
SYNE1-239ENST00000545694 SCUBE2Q9NQ36 999 aa10.15□□□□□ -0.78
SYNE1-239ENST00000545694 PLSCR2Q9NRY7 297 aa10.13□□□□□ -0.79
SYNE1-239ENST00000545694 PCDHB8Q9UN66 801 aa10.13□□□□□ -0.79
SYNE1-239ENST00000545694 CC2D2AQ9P2K1 1620 aa10.13□□□□□ -0.79
SYNE1-239ENST00000545694 POTEMA6NI47 508 aa10.12□□□□□ -0.79
SYNE1-239ENST00000545694 PRDM2Q13029 1718 aa10.11□□□□□ -0.79
SYNE1-239ENST00000545694 IER5LQ5T953 404 aa10.11□□□□□ -0.79
SYNE1-239ENST00000545694 POTEGQ6S5H5 508 aa10.11□□□□□ -0.79
SYNE1-239ENST00000545694 FAM163AQ96GL9 167 aaPredicted RBP10.1□□□□□ -0.79
SYNE1-239ENST00000545694 EEA1Q15075 1411 aa10.07□□□□□ -0.8
SYNE1-239ENST00000545694 CFTRP13569 1480 aa10.07□□□□□ -0.8
SYNE1-239ENST00000545694 WRNQ14191 1432 aaPredicted RBP eCLIP10.06□□□□□ -0.8
SYNE1-239ENST00000545694 PLCG2P16885 1265 aa10.04□□□□□ -0.8
SYNE1-239ENST00000545694 GSE1Q14687 1217 aa10.04□□□□□ -0.8
SYNE1-239ENST00000545694 LCE2DQ5TA82 110 aaPredicted RBP10.04□□□□□ -0.8
SYNE1-239ENST00000545694 ABCC8Q09428 1581 aa10.04□□□□□ -0.8
SYNE1-239ENST00000545694 IRX5P78411 483 aaPredicted RBP10.02□□□□□ -0.81
SYNE1-239ENST00000545694 CADPSQ9ULU8 1353 aa10.01□□□□□ -0.81
SYNE1-239ENST00000545694 TOP2BQ02880 1626 aa10□□□□□ -0.81
SYNE1-239ENST00000545694 BIVM-ERCC5R4GMW8 1640 aa10□□□□□ -0.81
SYNE1-239ENST00000545694 IFNLR1Q8IU57 520 aaPredicted RBP10□□□□□ -0.81
SYNE1-239ENST00000545694 SLAIN1Q8ND83 568 aa9.99□□□□□ -0.81
SYNE1-239ENST00000545694 OCEL1Q9H607 264 aa9.98□□□□□ -0.81
SYNE1-239ENST00000545694 SYNJ1O43426 1573 aa9.97□□□□□ -0.81
SYNE1-239ENST00000545694 CHRM1P11229 460 aaPredicted RBP9.96□□□□□ -0.82
SYNE1-239ENST00000545694 ZNF467Q7Z7K2 595 aaPredicted RBP9.96□□□□□ -0.82
SYNE1-239ENST00000545694 SPOCK2Q92563 424 aa9.96□□□□□ -0.82
SYNE1-239ENST00000545694 CIZ1Q9ULV3 898 aaPredicted RBP9.96□□□□□ -0.82
SYNE1-239ENST00000545694 LAMC3Q9Y6N6 1575 aa9.95□□□□□ -0.82
SYNE1-239ENST00000545694 PSEN1P49768 467 aa9.92□□□□□ -0.82
SYNE1-239ENST00000545694 LOC105371045A0A1W2PR82 267 aa9.91□□□□□ -0.82
SYNE1-239ENST00000545694 GOLGA2Q08379 1002 aa9.91□□□□□ -0.82
SYNE1-239ENST00000545694 MKRN3Q13064 507 aaKnown RBP9.9□□□□□ -0.82
SYNE1-239ENST00000545694 PCDH10Q9P2E7 1040 aa9.89□□□□□ -0.83
SYNE1-239ENST00000545694 CUX1P39880 1505 aa9.88□□□□□ -0.83
SYNE1-239ENST00000545694 PDCD7Q8N8D1 485 aaKnown RBP9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms