RNA–Protein interactions for RNA: ENST00000544585.5

CPSF7-222, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 2

Gene CPSF7, Length 722 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-222	ENST00000544585	KDM2A	Q9Y2K7	1162 aa		11.88	□□□□□ -0.51
CPSF7-222	ENST00000544585	RGL2	O15211	777 aa		11.86	□□□□□ -0.51
CPSF7-222	ENST00000544585	SPRYD3	Q8NCJ5	442 aa		11.85	□□□□□ -0.51
CPSF7-222	ENST00000544585	SSUH2	Q9Y2M2	353 aa		11.84	□□□□□ -0.51
CPSF7-222	ENST00000544585	OSCAR	Q8IYS5	282 aa		11.83	□□□□□ -0.52
CPSF7-222	ENST00000544585	PLEKHG5	O94827	1062 aa		11.81	□□□□□ -0.52
CPSF7-222	ENST00000544585	ATAD2B	Q9ULI0	1458 aa		11.8	□□□□□ -0.52
CPSF7-222	ENST00000544585	ZBTB47	Q9UFB7	747 aa	Predicted RBP	11.79	□□□□□ -0.52
CPSF7-222	ENST00000544585	CIZ1	Q9ULV3	898 aa	Predicted RBP	11.79	□□□□□ -0.52
CPSF7-222	ENST00000544585	DSG3	P32926	999 aa		11.78	□□□□□ -0.52
CPSF7-222	ENST00000544585	TPRN	Q4KMQ1	711 aa		11.77	□□□□□ -0.53
CPSF7-222	ENST00000544585	CHGA	P10645	457 aa	Known RBP	11.75	□□□□□ -0.53
CPSF7-222	ENST00000544585	SMARCA2	P51531	1590 aa		11.74	□□□□□ -0.53
CPSF7-222	ENST00000544585	TSHZ2	Q9NRE2	1034 aa		11.73	□□□□□ -0.53
CPSF7-222	ENST00000544585	NES	P48681	1621 aa		11.71	□□□□□ -0.53
CPSF7-222	ENST00000544585	TRIM41	Q8WV44	630 aa		11.71	□□□□□ -0.53
CPSF7-222	ENST00000544585	HMGXB3	Q12766	1538 aa		11.7	□□□□□ -0.54
CPSF7-222	ENST00000544585	BAZ1B	Q9UIG0	1483 aa	Known RBP	11.65	□□□□□ -0.54
CPSF7-222	ENST00000544585	PDS5B	Q9NTI5	1447 aa		11.65	□□□□□ -0.54
CPSF7-222	ENST00000544585	SMARCA4	P51532	1647 aa		11.63	□□□□□ -0.55
CPSF7-222	ENST00000544585	LAMC3	Q9Y6N6	1575 aa		11.61	□□□□□ -0.55
CPSF7-222	ENST00000544585	HS6ST3	Q8IZP7	471 aa		11.6	□□□□□ -0.55
CPSF7-222	ENST00000544585	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	11.59	□□□□□ -0.55
CPSF7-222	ENST00000544585	NBR1	Q14596	966 aa		11.59	□□□□□ -0.55
CPSF7-222	ENST00000544585	GSE1	Q14687	1217 aa		11.58	□□□□□ -0.56
CPSF7-222	ENST00000544585	THOC2	Q8NI27	1593 aa	Known RBP	11.57	□□□□□ -0.56
CPSF7-222	ENST00000544585	CADPS	Q9ULU8	1353 aa		11.56	□□□□□ -0.56
CPSF7-222	ENST00000544585	PEG3	Q9GZU2	1588 aa		11.55	□□□□□ -0.56
CPSF7-222	ENST00000544585	DCAF8	Q5TAQ9	597 aa		11.48	□□□□□ -0.57
CPSF7-222	ENST00000544585	RNF25	Q96BH1	459 aa	Predicted RBP	11.48	□□□□□ -0.57
CPSF7-222	ENST00000544585	MRC2	Q9UBG0	1479 aa		11.48	□□□□□ -0.57
CPSF7-222	ENST00000544585	MROH2B	Q7Z745	1585 aa		11.47	□□□□□ -0.57
CPSF7-222	ENST00000544585	RIOK3	O14730	519 aa	Known RBP	11.46	□□□□□ -0.57
CPSF7-222	ENST00000544585	KIF21A	Q7Z4S6	1674 aa		11.46	□□□□□ -0.58
CPSF7-222	ENST00000544585	NUBP1	P53384	320 aa		11.44	□□□□□ -0.58
CPSF7-222	ENST00000544585	POTED	Q86YR6	584 aa		11.43	□□□□□ -0.58
CPSF7-222	ENST00000544585	WDR62	O43379	1518 aa		11.41	□□□□□ -0.58
CPSF7-222	ENST00000544585	NKX1-1	Q15270	411 aa	Predicted RBP	11.41	□□□□□ -0.58
CPSF7-222	ENST00000544585	STK25	O00506	426 aa		11.39	□□□□□ -0.59
CPSF7-222	ENST00000544585	FAM212A	Q96EL1	285 aa		11.39	□□□□□ -0.59
CPSF7-222	ENST00000544585	CEP164	Q9UPV0	1460 aa		11.38	□□□□□ -0.59
CPSF7-222	ENST00000544585	GTPBP6	O43824	516 aa	Predicted RBP	11.38	□□□□□ -0.59
CPSF7-222	ENST00000544585	VGF	O15240	615 aa	Predicted RBP	11.37	□□□□□ -0.59
CPSF7-222	ENST00000544585	SPDYE1	Q8NFV5	336 aa	Predicted RBP	11.36	□□□□□ -0.59
CPSF7-222	ENST00000544585	FANCD2	Q9BXW9	1451 aa		11.36	□□□□□ -0.59
CPSF7-222	ENST00000544585	RYDEN	Q9NUL5	291 aa	Known RBP	11.33	□□□□□ -0.6
CPSF7-222	ENST00000544585	CFTR	P13569	1480 aa		11.32	□□□□□ -0.6
CPSF7-222	ENST00000544585	CLEC11A	Q9Y240	323 aa		11.31	□□□□□ -0.6
CPSF7-222	ENST00000544585	PRR29	P0C7W0	189 aa		11.3	□□□□□ -0.6
CPSF7-222	ENST00000544585	CHRM1	P11229	460 aa	Predicted RBP	11.3	□□□□□ -0.6
CPSF7-222	ENST00000544585	STK24	Q9Y6E0	443 aa		11.29	□□□□□ -0.6
CPSF7-222	ENST00000544585	CACNB1	Q02641	598 aa	Predicted RBP	11.28	□□□□□ -0.6
CPSF7-222	ENST00000544585	WIZ	O95785	1651 aa		11.27	□□□□□ -0.6
CPSF7-222	ENST00000544585	SGIP1	Q9BQI5	828 aa		11.27	□□□□□ -0.61
CPSF7-222	ENST00000544585	BCL11B	Q9C0K0	894 aa	Predicted RBP	11.27	□□□□□ -0.61
CPSF7-222	ENST00000544585	CREBZF	Q9NS37	354 aa		11.27	□□□□□ -0.61
CPSF7-222	ENST00000544585	CYB5RL	Q6IPT4	315 aa		11.26	□□□□□ -0.61
CPSF7-222	ENST00000544585	AKT1S1	Q96B36	256 aa		11.26	□□□□□ -0.61
CPSF7-222	ENST00000544585	RBM42	Q9BTD8	480 aa	Known RBP	11.25	□□□□□ -0.61
CPSF7-222	ENST00000544585	URB2	Q14146	1524 aa	Known RBP	11.25	□□□□□ -0.61
CPSF7-222	ENST00000544585	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	11.24	□□□□□ -0.61
CPSF7-222	ENST00000544585	ZFP91	Q96JP5	570 aa	Predicted RBP	11.24	□□□□□ -0.61
CPSF7-222	ENST00000544585	MNX1	P50219	401 aa	Predicted RBP	11.23	□□□□□ -0.61
CPSF7-222	ENST00000544585	RASEF	Q8IZ41	740 aa		11.23	□□□□□ -0.61
CPSF7-222	ENST00000544585	IFT140	Q96RY7	1462 aa		11.2	□□□□□ -0.62
CPSF7-222	ENST00000544585	RSF1	Q96T23	1441 aa	Predicted RBP	11.2	□□□□□ -0.62
CPSF7-222	ENST00000544585	PYGB	P11216	843 aa		11.2	□□□□□ -0.62
CPSF7-222	ENST00000544585	RIMBP3C	A6NJZ7	1639 aa		11.2	□□□□□ -0.62
CPSF7-222	ENST00000544585	RIMBP3B	A6NNM3	1639 aa		11.2	□□□□□ -0.62
CPSF7-222	ENST00000544585	RIMBP3	Q9UFD9	1639 aa		11.2	□□□□□ -0.62
CPSF7-222	ENST00000544585	P3H3	Q8IVL6	736 aa		11.19	□□□□□ -0.62
CPSF7-222	ENST00000544585	ARHGEF11	O15085	1522 aa		11.18	□□□□□ -0.62
CPSF7-222	ENST00000544585	ABCC8	Q09428	1581 aa		11.16	□□□□□ -0.62
CPSF7-222	ENST00000544585	ZNF608	Q9ULD9	1512 aa	Predicted RBP	11.15	□□□□□ -0.62
CPSF7-222	ENST00000544585	ILDR1	Q86SU0	546 aa	Predicted RBP	11.15	□□□□□ -0.62
CPSF7-222	ENST00000544585	GTF3C3	Q9Y5Q9	886 aa		11.15	□□□□□ -0.62
CPSF7-222	ENST00000544585	TOP2A	P11388	1531 aa	Known RBP	11.14	□□□□□ -0.63
CPSF7-222	ENST00000544585	REM2	Q8IYK8	340 aa	Predicted RBP	11.14	□□□□□ -0.63
CPSF7-222	ENST00000544585	WDR70	Q9NW82	654 aa		11.13	□□□□□ -0.63
CPSF7-222	ENST00000544585	TULP1	O00294	542 aa	Predicted RBP	11.12	□□□□□ -0.63
CPSF7-222	ENST00000544585	TIMELESS	Q9UNS1	1208 aa		11.1	□□□□□ -0.63
CPSF7-222	ENST00000544585	TOPBP1	Q92547	1522 aa		11.09	□□□□□ -0.63
CPSF7-222	ENST00000544585	ERICH6	Q7L0X2	663 aa		11.09	□□□□□ -0.63
CPSF7-222	ENST00000544585	CCDC88B	A6NC98	1476 aa		11.08	□□□□□ -0.64
CPSF7-222	ENST00000544585	AQR	O60306	1485 aa	Known RBP eCLIP	11.08	□□□□□ -0.64	3e-7	■■■■■ 40.5
CPSF7-222	ENST00000544585	TMEM132A	Q24JP5	1023 aa		11.07	□□□□□ -0.64
CPSF7-222	ENST00000544585	ZNF467	Q7Z7K2	595 aa	Predicted RBP	11.07	□□□□□ -0.64
CPSF7-222	ENST00000544585	CHMP7	Q8WUX9	453 aa	Predicted RBP	11.05	□□□□□ -0.64
CPSF7-222	ENST00000544585	KCNV2	Q8TDN2	545 aa		11.03	□□□□□ -0.64
CPSF7-222	ENST00000544585	ARAP1	Q96P48	1450 aa		11.03	□□□□□ -0.64
CPSF7-222	ENST00000544585	PDAP1	Q13442	181 aa	Known RBP	11.02	□□□□□ -0.65
CPSF7-222	ENST00000544585	LMOD2	Q6P5Q4	547 aa		11.01	□□□□□ -0.65
CPSF7-222	ENST00000544585	TSPYL2	Q9H2G4	693 aa	Predicted RBP	11.01	□□□□□ -0.65
CPSF7-222	ENST00000544585	DNMBP	Q6XZF7	1577 aa		11	□□□□□ -0.65
CPSF7-222	ENST00000544585	PITPNM1	O00562	1244 aa		11	□□□□□ -0.65
CPSF7-222	ENST00000544585	CADPS2	Q86UW7	1296 aa		11	□□□□□ -0.65
CPSF7-222	ENST00000544585	TDRD9	Q8NDG6	1382 aa	Known RBP	11	□□□□□ -0.65
CPSF7-222	ENST00000544585	SOGA1	O94964	1423 aa		11	□□□□□ -0.65
CPSF7-222	ENST00000544585	EIF4G3	O43432	1585 aa	Known RBP	10.99	□□□□□ -0.65
CPSF7-222	ENST00000544585	PRDM2	Q13029	1718 aa		10.99	□□□□□ -0.65

Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms