RNA–Protein interactions for RNA: ENST00000544349.5

VPS33A-209, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS33A, Length 2,114 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-209ENST00000544349 FHAD1B1AJZ9 1412 aa22.26■■□□□ 1.15
VPS33A-209ENST00000544349 EIF4G3O43432 1585 aaKnown RBP22.26■■□□□ 1.15
VPS33A-209ENST00000544349 ADAMTS12P58397 1594 aa22.25■■□□□ 1.15
VPS33A-209ENST00000544349 SNAPC4Q5SXM2 1469 aa22.16■■□□□ 1.14
VPS33A-209ENST00000544349 EFCAB5A4FU69 1503 aa22.11■■□□□ 1.13
VPS33A-209ENST00000544349 APLP2Q06481 763 aa22.11■■□□□ 1.13
VPS33A-209ENST00000544349 MAGI1Q96QZ7 1491 aaPredicted RBP22.1■■□□□ 1.13
VPS33A-209ENST00000544349 TTBK1Q5TCY1 1321 aaPredicted RBP22.07■■□□□ 1.12
VPS33A-209ENST00000544349 P3H3Q8IVL6 736 aa22.05■■□□□ 1.12
VPS33A-209ENST00000544349 GRIN2AQ12879 1464 aa22.04■■□□□ 1.12
VPS33A-209ENST00000544349 SAMD9Q5K651 1589 aa22.03■■□□□ 1.12
VPS33A-209ENST00000544349 SYNJ2O15056 1496 aa22.03■■□□□ 1.12
VPS33A-209ENST00000544349 FHOD3Q2V2M9 1422 aa22.03■■□□□ 1.12
VPS33A-209ENST00000544349 IQGAP2Q13576 1575 aa22.02■■□□□ 1.12
VPS33A-209ENST00000544349 CHMP7Q8WUX9 453 aaPredicted RBP21.99■■□□□ 1.11
VPS33A-209ENST00000544349 DNAJC5Q9H3Z4 198 aa21.98■■□□□ 1.11
VPS33A-209ENST00000544349 KIAA0586Q9BVV6 1533 aa21.96■■□□□ 1.11
VPS33A-209ENST00000544349 PCF11O94913 1555 aaKnown RBP21.93■■□□□ 1.1
VPS33A-209ENST00000544349 FMN1Q68DA7 1419 aa21.93■■□□□ 1.1
VPS33A-209ENST00000544349 MAP3K1Q13233 1512 aa21.92■■□□□ 1.1
VPS33A-209ENST00000544349 UGGT2Q9NYU1 1516 aa21.92■■□□□ 1.1
VPS33A-209ENST00000544349 FBLN2P98095 1184 aa21.92■■□□□ 1.1
VPS33A-209ENST00000544349 KANK4Q5T7N3 995 aaPredicted RBP21.92■■□□□ 1.1
VPS33A-209ENST00000544349 ZEB1P37275 1124 aaPredicted RBP21.91■■□□□ 1.1
VPS33A-209ENST00000544349 CEP170Q5SW79 1584 aa21.91■■□□□ 1.1
VPS33A-209ENST00000544349 CASKIN1Q8WXD9 1431 aa21.9■■□□□ 1.1
VPS33A-209ENST00000544349 TIAM1Q13009 1591 aa21.89■■□□□ 1.09
VPS33A-209ENST00000544349 FYCO1Q9BQS8 1478 aa21.89■■□□□ 1.09
VPS33A-209ENST00000544349 NUP160Q12769 1436 aa21.88■■□□□ 1.09
VPS33A-209ENST00000544349 CFAP43Q8NDM7 1665 aa21.83■■□□□ 1.09
VPS33A-209ENST00000544349 ATP1B4Q9UN42 357 aaPredicted RBP21.82■■□□□ 1.08
VPS33A-209ENST00000544349 DISP1Q96F81 1524 aa21.81■■□□□ 1.08
VPS33A-209ENST00000544349 KIAA0556O60303 1618 aa21.8■■□□□ 1.08
VPS33A-209ENST00000544349 LRRC9Q6ZRR7 1453 aa21.79■■□□□ 1.08
VPS33A-209ENST00000544349 CHD1O14646 1710 aa21.77■■□□□ 1.08
VPS33A-209ENST00000544349 JPH4Q96JJ6 628 aa21.74■■□□□ 1.07
VPS33A-209ENST00000544349 LRRIQ1Q96JM4 1722 aa21.73■■□□□ 1.07
VPS33A-209ENST00000544349 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.73■■□□□ 1.07
VPS33A-209ENST00000544349 HECW1Q76N89 1606 aa21.69■■□□□ 1.06
VPS33A-209ENST00000544349 RRBP1Q9P2E9 1410 aaKnown RBP21.68■■□□□ 1.06
VPS33A-209ENST00000544349 CARMIL2Q6F5E8 1435 aa21.67■■□□□ 1.06
VPS33A-209ENST00000544349 CCDC18Q5T9S5 1454 aa21.65■■□□□ 1.06
VPS33A-209ENST00000544349 EPRSP07814 1512 aaKnown RBP21.62■■□□□ 1.05
VPS33A-209ENST00000544349 HNRNPUL2Q1KMD3 747 aaKnown RBP21.61■■□□□ 1.05
VPS33A-209ENST00000544349 MTUS2Q5JR59 1369 aa21.6■■□□□ 1.05
VPS33A-209ENST00000544349 PHLDB1Q86UU1 1377 aa21.6■■□□□ 1.05
VPS33A-209ENST00000544349 CCNB3Q8WWL7 1395 aa21.6■■□□□ 1.05
VPS33A-209ENST00000544349 CCER1Q8TC90 406 aaPredicted RBP21.6■■□□□ 1.05
VPS33A-209ENST00000544349 RAPGEF6Q8TEU7 1601 aa21.6■■□□□ 1.05
VPS33A-209ENST00000544349 PRG4Q92954 1404 aaPredicted RBP21.58■■□□□ 1.04
VPS33A-209ENST00000544349 SHROOM2Q13796 1616 aa21.57■■□□□ 1.04
VPS33A-209ENST00000544349 EHBP1L1Q8N3D4 1523 aa21.57■■□□□ 1.04
VPS33A-209ENST00000544349 CDK13Q14004 1512 aaKnown RBP21.56■■□□□ 1.04
VPS33A-209ENST00000544349 NUP153P49790 1475 aaKnown RBP21.55■■□□□ 1.04
VPS33A-209ENST00000544349 MAGI3Q5TCQ9 1506 aa21.55■■□□□ 1.04
VPS33A-209ENST00000544349 PLB1Q6P1J6 1458 aa21.53■■□□□ 1.04
VPS33A-209ENST00000544349 SUPT6HQ7KZ85 1726 aaKnown RBP21.52■■□□□ 1.04
VPS33A-209ENST00000544349 CLASP1Q7Z460 1538 aa21.51■■□□□ 1.03
VPS33A-209ENST00000544349 ARID3CA6NKF2 412 aa21.5■■□□□ 1.03
VPS33A-209ENST00000544349 NCOA2Q15596 1464 aa21.5■■□□□ 1.03
VPS33A-209ENST00000544349 ABCA8O94911 1581 aa21.48■■□□□ 1.03
VPS33A-209ENST00000544349 ARHGEF11O15085 1522 aa21.47■■□□□ 1.03
VPS33A-209ENST00000544349 PTPRGP23470 1445 aa21.46■■□□□ 1.03
VPS33A-209ENST00000544349 FGD6Q6ZV73 1430 aa21.43■■□□□ 1.02
VPS33A-209ENST00000544349 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.43■■□□□ 1.02
VPS33A-209ENST00000544349 MYOM3Q5VTT5 1437 aa21.42■■□□□ 1.02
VPS33A-209ENST00000544349 CDK11AQ9UQ88 783 aaPredicted RBP21.42■■□□□ 1.02
VPS33A-209ENST00000544349 ERCC6L2Q5T890 1561 aa21.42■■□□□ 1.02
VPS33A-209ENST00000544349 FAM50AQ14320 339 aaKnown RBP21.41■■□□□ 1.02
VPS33A-209ENST00000544349 ITGAEP38570 1179 aa21.39■■□□□ 1.01
VPS33A-209ENST00000544349 ATP10BO94823 1461 aa21.35■■□□□ 1.01
VPS33A-209ENST00000544349 TROQ12816 1431 aaPredicted RBP21.35■■□□□ 1.01
VPS33A-209ENST00000544349 UACAQ9BZF9 1416 aa21.33■■□□□ 1.01
VPS33A-209ENST00000544349 PTPN23Q9H3S7 1636 aa21.32■■□□□ 1
VPS33A-209ENST00000544349 MIA2Q96PC5 1412 aa21.29■■□□□ 1
VPS33A-209ENST00000544349 ADCY10Q96PN6 1610 aa21.29■■□□□ 1
VPS33A-209ENST00000544349 TCOF1Q13428 1488 aaKnown RBP21.29■■□□□ 1
VPS33A-209ENST00000544349 PLEKHD1A6NEE1 506 aa21.28■■□□□ 1
VPS33A-209ENST00000544349 OSCARQ8IYS5 282 aa21.28■■□□□ 1
VPS33A-209ENST00000544349 ABCC2Q92887 1545 aa21.26■□□□□ 0.99
VPS33A-209ENST00000544349 KIF14Q15058 1648 aa21.25■□□□□ 0.99
VPS33A-209ENST00000544349 SETD5Q9C0A6 1442 aa21.23■□□□□ 0.99
VPS33A-209ENST00000544349 PTPRKQ15262 1439 aa21.21■□□□□ 0.99
VPS33A-209ENST00000544349 RAB3GAP2Q9H2M9 1393 aa21.21■□□□□ 0.99
VPS33A-209ENST00000544349 UHRF1BP1LA0JNW5 1464 aa21.2■□□□□ 0.98
VPS33A-209ENST00000544349 ITSN2Q9NZM3 1697 aa21.19■□□□□ 0.98
VPS33A-209ENST00000544349 DHX57Q6P158 1386 aaKnown RBP21.19■□□□□ 0.98
VPS33A-209ENST00000544349 GPATCH8Q9UKJ3 1502 aaKnown RBP21.18■□□□□ 0.98
VPS33A-209ENST00000544349 ABCC10Q5T3U5 1492 aa21.17■□□□□ 0.98
VPS33A-209ENST00000544349 CFDP1Q9UEE9 299 aaPredicted RBP21.13■□□□□ 0.97
VPS33A-209ENST00000544349 KDM5BQ9UGL1 1544 aa21.13■□□□□ 0.97
VPS33A-209ENST00000544349 CDC42BPAQ5VT25 1732 aa21.12■□□□□ 0.97
VPS33A-209ENST00000544349 CLSPNQ9HAW4 1339 aa21.12■□□□□ 0.97
VPS33A-209ENST00000544349 HFM1A2PYH4 1435 aa21.12■□□□□ 0.97
VPS33A-209ENST00000544349 ZCCHC11Q5TAX3 1644 aaKnown RBP21.12■□□□□ 0.97
VPS33A-209ENST00000544349 ZNF644Q9H582 1327 aaPredicted RBP21.11■□□□□ 0.97
VPS33A-209ENST00000544349 DNMT1P26358 1616 aaKnown RBP21.09■□□□□ 0.97
VPS33A-209ENST00000544349 CAMSAP2Q08AD1 1489 aa21.08■□□□□ 0.97
VPS33A-209ENST00000544349 DIEXFQ68CQ4 756 aaKnown RBP21.07■□□□□ 0.96
VPS33A-209ENST00000544349 DAPK1P53355 1430 aa21.07■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms