RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 FBXO3Q9UK99 471 aa9.23□□□□□ -0.93
CLIP1-217ENST00000543205 SMARCA4P51532 1647 aa9.23□□□□□ -0.93
CLIP1-217ENST00000543205 MROH2BQ7Z745 1585 aa9.2□□□□□ -0.94
CLIP1-217ENST00000543205 CLEC11AQ9Y240 323 aa9.18□□□□□ -0.94
CLIP1-217ENST00000543205 ATAD2BQ9ULI0 1458 aa9.17□□□□□ -0.94
CLIP1-217ENST00000543205 SMARCA2P51531 1590 aa9.16□□□□□ -0.94
CLIP1-217ENST00000543205 PRKCSHP14314 528 aaPredicted RBP9.15□□□□□ -0.94
CLIP1-217ENST00000543205 NCAPD3P42695 1498 aa9.15□□□□□ -0.94
CLIP1-217ENST00000543205 POTEIP0CG38 1075 aa9.15□□□□□ -0.94
CLIP1-217ENST00000543205 RSF1Q96T23 1441 aaPredicted RBP9.14□□□□□ -0.95
CLIP1-217ENST00000543205 PCDH10Q9P2E7 1040 aa9.14□□□□□ -0.95
CLIP1-217ENST00000543205 PEG3Q9GZU2 1588 aa9.13□□□□□ -0.95
CLIP1-217ENST00000543205 BAZ1BQ9UIG0 1483 aaKnown RBP9.11□□□□□ -0.95
CLIP1-217ENST00000543205 HMGXB3Q12766 1538 aa9.1□□□□□ -0.95
CLIP1-217ENST00000543205 VASPP50552 380 aaPredicted RBP9.1□□□□□ -0.95
CLIP1-217ENST00000543205 WIZO95785 1651 aa9.1□□□□□ -0.95
CLIP1-217ENST00000543205 DCBLD2Q96PD2 775 aa9.06□□□□□ -0.96
CLIP1-217ENST00000543205 STAG3Q9UJ98 1225 aa9.06□□□□□ -0.96
CLIP1-217ENST00000543205 DAXXQ9UER7 740 aaPredicted RBP9.05□□□□□ -0.96
CLIP1-217ENST00000543205 POTEMA6NI47 508 aa9.04□□□□□ -0.96
CLIP1-217ENST00000543205 SUPT5HO00267 1087 aaKnown RBP9.04□□□□□ -0.96
CLIP1-217ENST00000543205 CD44P16070 742 aaKnown RBP9.04□□□□□ -0.96
CLIP1-217ENST00000543205 CHADLQ6NUI6 762 aa9.02□□□□□ -0.97
CLIP1-217ENST00000543205 TOP2AP11388 1531 aaKnown RBP9.01□□□□□ -0.97
CLIP1-217ENST00000543205 PRR29P0C7W0 189 aa9□□□□□ -0.97
CLIP1-217ENST00000543205 POTEGQ6S5H5 508 aa9□□□□□ -0.97
CLIP1-217ENST00000543205 PLCD3Q8N3E9 789 aa8.98□□□□□ -0.97
CLIP1-217ENST00000543205 IFNLR1Q8IU57 520 aaPredicted RBP8.97□□□□□ -0.97
CLIP1-217ENST00000543205 OTUD5Q96G74 571 aa8.96□□□□□ -0.98
CLIP1-217ENST00000543205 MIER1Q8N108 512 aa8.95□□□□□ -0.98
CLIP1-217ENST00000543205 KLHL34Q8N239 644 aa8.93□□□□□ -0.98
CLIP1-217ENST00000543205 CUX2O14529 1486 aa8.93□□□□□ -0.98
CLIP1-217ENST00000543205 PLEKHG5O94827 1062 aa8.92□□□□□ -0.98
CLIP1-217ENST00000543205 ZNF579Q8NAF0 562 aaKnown RBP8.92□□□□□ -0.98
CLIP1-217ENST00000543205 FARP1Q9Y4F1 1045 aaPredicted RBP8.92□□□□□ -0.98
CLIP1-217ENST00000543205 CCDC88BA6NC98 1476 aa8.92□□□□□ -0.98
CLIP1-217ENST00000543205 CADPSQ9ULU8 1353 aa8.91□□□□□ -0.98
CLIP1-217ENST00000543205 TAOK2Q9UL54 1235 aa8.9□□□□□ -0.98
CLIP1-217ENST00000543205 NESP48681 1621 aa8.9□□□□□ -0.99
CLIP1-217ENST00000543205 LAMC3Q9Y6N6 1575 aa8.88□□□□□ -0.99
CLIP1-217ENST00000543205 ERCC6Q03468 1493 aa8.86□□□□□ -0.99
CLIP1-217ENST00000543205 CFTRP13569 1480 aa8.86□□□□□ -0.99
CLIP1-217ENST00000543205 SPOCK2Q92563 424 aa8.85□□□□□ -0.99
CLIP1-217ENST00000543205 ZBTB47Q9UFB7 747 aaPredicted RBP8.85□□□□□ -0.99
CLIP1-217ENST00000543205 PDS5BQ9NTI5 1447 aa8.85□□□□□ -0.99
CLIP1-217ENST00000543205 TIMELESSQ9UNS1 1208 aa8.83□□□□□ -1
CLIP1-217ENST00000543205 PLCB2Q00722 1185 aa8.82□□□□□ -1
CLIP1-217ENST00000543205 BCANQ96GW7 911 aa8.81□□□□□ -1
CLIP1-217ENST00000543205 CREBZFQ9NS37 354 aa8.8□□□□□ -1
CLIP1-217ENST00000543205 ZRANB1Q9UGI0 708 aa8.8□□□□□ -1
CLIP1-217ENST00000543205 MAMSTRQ6ZN01 415 aa8.8□□□□□ -1
CLIP1-217ENST00000543205 TRIM41Q8WV44 630 aa8.8□□□□□ -1
CLIP1-217ENST00000543205 FANCD2Q9BXW9 1451 aa8.8□□□□□ -1
CLIP1-217ENST00000543205 POTEB2H3BUK9 544 aa8.79□□□□□ -1
CLIP1-217ENST00000543205 CEP164Q9UPV0 1460 aa8.77□□□□□ -1
CLIP1-217ENST00000543205 KIF21AQ7Z4S6 1674 aa8.77□□□□□ -1.01
CLIP1-217ENST00000543205 TPRNQ4KMQ1 711 aa8.76□□□□□ -1.01
CLIP1-217ENST00000543205 PRDM2Q13029 1718 aa8.75□□□□□ -1.01
CLIP1-217ENST00000543205 MRC2Q9UBG0 1479 aa8.74□□□□□ -1.01
CLIP1-217ENST00000543205 GALR2O43603 387 aaPredicted RBP8.73□□□□□ -1.01
CLIP1-217ENST00000543205 PKD2Q13563 968 aa8.73□□□□□ -1.01
CLIP1-217ENST00000543205 ARXQ96QS3 562 aa8.73□□□□□ -1.01
CLIP1-217ENST00000543205 CIZ1Q9ULV3 898 aaPredicted RBP8.72□□□□□ -1.01
CLIP1-217ENST00000543205 THOC2Q8NI27 1593 aaKnown RBP8.72□□□□□ -1.01
CLIP1-217ENST00000543205 MNX1P50219 401 aaPredicted RBP8.71□□□□□ -1.01
CLIP1-217ENST00000543205 HAP1P54257 671 aaPredicted RBP8.71□□□□□ -1.01
CLIP1-217ENST00000543205 TULP1O00294 542 aaPredicted RBP8.71□□□□□ -1.02
CLIP1-217ENST00000543205 WDR62O43379 1518 aa8.69□□□□□ -1.02
CLIP1-217ENST00000543205 PAK3O75914 559 aaPredicted RBP8.69□□□□□ -1.02
CLIP1-217ENST00000543205 NPM1P06748 294 aaKnown RBP eCLIP8.69□□□□□ -1.02
CLIP1-217ENST00000543205 URB2Q14146 1524 aaKnown RBP8.69□□□□□ -1.02
CLIP1-217ENST00000543205 NUBP1P53384 320 aa8.68□□□□□ -1.02
CLIP1-217ENST00000543205 ECM2O94769 699 aaPredicted RBP8.68□□□□□ -1.02
CLIP1-217ENST00000543205 ABCC8Q09428 1581 aa8.68□□□□□ -1.02
CLIP1-217ENST00000543205 SLC39A7Q92504 469 aa8.67□□□□□ -1.02
CLIP1-217ENST00000543205 C7P10643 843 aa8.66□□□□□ -1.02
CLIP1-217ENST00000543205 TOPBP1Q92547 1522 aa8.66□□□□□ -1.02
CLIP1-217ENST00000543205 GSE1Q14687 1217 aa8.65□□□□□ -1.02
CLIP1-217ENST00000543205 DNMBPQ6XZF7 1577 aa8.65□□□□□ -1.02
CLIP1-217ENST00000543205 DCAF8Q5TAQ9 597 aa8.64□□□□□ -1.03
CLIP1-217ENST00000543205 FAM212AQ96EL1 285 aa8.64□□□□□ -1.03
CLIP1-217ENST00000543205 FAM163AQ96GL9 167 aaPredicted RBP8.64□□□□□ -1.03
CLIP1-217ENST00000543205 SCUBE2Q9NQ36 999 aa8.64□□□□□ -1.03
CLIP1-217ENST00000543205 LCE2DQ5TA82 110 aaPredicted RBP8.63□□□□□ -1.03
CLIP1-217ENST00000543205 METRNQ9UJH8 293 aa8.63□□□□□ -1.03
CLIP1-217ENST00000543205 WRNQ14191 1432 aaPredicted RBP eCLIP8.63□□□□□ -1.03
CLIP1-217ENST00000543205 RASEFQ8IZ41 740 aa8.63□□□□□ -1.03
CLIP1-217ENST00000543205 CUX1P39880 1505 aa8.62□□□□□ -1.03
CLIP1-217ENST00000543205 PELP1Q8IZL8 1130 aaKnown RBP8.61□□□□□ -1.03
CLIP1-217ENST00000543205 ASTLQ6HA08 431 aaPredicted RBP8.6□□□□□ -1.03
CLIP1-217ENST00000543205 IFT140Q96RY7 1462 aa8.59□□□□□ -1.03
CLIP1-217ENST00000543205 POLA1P09884 1462 aaPredicted RBP8.59□□□□□ -1.03
CLIP1-217ENST00000543205 FGD5Q6ZNL6 1462 aa8.59□□□□□ -1.03
CLIP1-217ENST00000543205 SOGA1O94964 1423 aa8.58□□□□□ -1.04
CLIP1-217ENST00000543205 RGL2O15211 777 aa8.58□□□□□ -1.04
CLIP1-217ENST00000543205 SYNJ1O43426 1573 aa8.57□□□□□ -1.04
CLIP1-217ENST00000543205 TOP2BQ02880 1626 aa8.57□□□□□ -1.04
CLIP1-217ENST00000543205 TSPYL2Q9H2G4 693 aaPredicted RBP8.56□□□□□ -1.04
CLIP1-217ENST00000543205 RAD54L2Q9Y4B4 1467 aa8.56□□□□□ -1.04
CLIP1-217ENST00000543205 POTEJP0CG39 1038 aa8.56□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms