RNA–Protein interactions for RNA: ENST00000542238.5

RTN3-211, Transcript of reticulon 3, humanhuman

TSL 3

Gene RTN3, Length 735 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-211ENST00000542238 KIF13AQ9H1H9 1805 aa27.21■■□□□ 1.95
RTN3-211ENST00000542238 NPM1P06748 294 aaKnown RBP eCLIP27.15■■□□□ 1.94
RTN3-211ENST00000542238 KIF27Q86VH2 1401 aa27.11■■□□□ 1.93
RTN3-211ENST00000542238 CUL7Q14999 1698 aa27.1■■□□□ 1.93
RTN3-211ENST00000542238 KIAA0586Q9BVV6 1533 aa27.09■■□□□ 1.93
RTN3-211ENST00000542238 IGF1RP08069 1367 aa27.09■■□□□ 1.93
RTN3-211ENST00000542238 FAM69CQ0P6D2 419 aa27.06■■□□□ 1.92
RTN3-211ENST00000542238 ABCC10Q5T3U5 1492 aa27.05■■□□□ 1.92
RTN3-211ENST00000542238 MAPKBP1O60336 1514 aa27.05■■□□□ 1.92
RTN3-211ENST00000542238 ADCY10Q96PN6 1610 aa27.03■■□□□ 1.92
RTN3-211ENST00000542238 DIP2BQ9P265 1576 aa26.97■■□□□ 1.91
RTN3-211ENST00000542238 CARMIL1Q5VZK9 1371 aa26.93■■□□□ 1.9
RTN3-211ENST00000542238 PTPRGP23470 1445 aa26.89■■□□□ 1.89
RTN3-211ENST00000542238 CARMIL2Q6F5E8 1435 aa26.87■■□□□ 1.89
RTN3-211ENST00000542238 TSPOAP1O95153 1857 aa26.85■■□□□ 1.89
RTN3-211ENST00000542238 TTBK1Q5TCY1 1321 aaPredicted RBP26.85■■□□□ 1.89
RTN3-211ENST00000542238 TNIKQ9UKE5 1360 aa26.83■■□□□ 1.88
RTN3-211ENST00000542238 KDM6BO15054 1643 aa26.82■■□□□ 1.88
RTN3-211ENST00000542238 IQGAP2Q13576 1575 aa26.81■■□□□ 1.88
RTN3-211ENST00000542238 ABCC2Q92887 1545 aa26.76■■□□□ 1.87
RTN3-211ENST00000542238 PLB1Q6P1J6 1458 aa26.7■■□□□ 1.87
RTN3-211ENST00000542238 ASXL2Q76L83 1435 aa26.69■■□□□ 1.86
RTN3-211ENST00000542238 UHRF1BP1LA0JNW5 1464 aa26.68■■□□□ 1.86
RTN3-211ENST00000542238 UACAQ9BZF9 1416 aa26.67■■□□□ 1.86
RTN3-211ENST00000542238 RAPGEF2Q9Y4G8 1499 aa26.67■■□□□ 1.86
RTN3-211ENST00000542238 DISP1Q96F81 1524 aa26.66■■□□□ 1.86
RTN3-211ENST00000542238 GLI2P10070 1586 aa26.64■■□□□ 1.86
RTN3-211ENST00000542238 UGGT2Q9NYU1 1516 aa26.61■■□□□ 1.85
RTN3-211ENST00000542238 PPRC1Q5VV67 1664 aaKnown RBP26.58■■□□□ 1.85
RTN3-211ENST00000542238 KDM4FA0A1W2PPD8 638 aa26.58■■□□□ 1.85
RTN3-211ENST00000542238 KDM5BQ9UGL1 1544 aa26.56■■□□□ 1.84
RTN3-211ENST00000542238 KIAA0556O60303 1618 aa26.56■■□□□ 1.84
RTN3-211ENST00000542238 ZCCHC11Q5TAX3 1644 aaKnown RBP26.53■■□□□ 1.84
RTN3-211ENST00000542238 EPRSP07814 1512 aaKnown RBP26.52■■□□□ 1.84
RTN3-211ENST00000542238 CTTNBP2Q8WZ74 1663 aa26.5■■□□□ 1.83
RTN3-211ENST00000542238 MAP3K4Q9Y6R4 1608 aa26.49■■□□□ 1.83
RTN3-211ENST00000542238 TEX14Q8IWB6 1497 aa26.47■■□□□ 1.83
RTN3-211ENST00000542238 GOLGA3Q08378 1498 aa26.43■■□□□ 1.82
RTN3-211ENST00000542238 WDR7Q9Y4E6 1490 aa26.4■■□□□ 1.82
RTN3-211ENST00000542238 COL17A1Q9UMD9 1497 aaPredicted RBP26.38■■□□□ 1.81
RTN3-211ENST00000542238 ADGRL1O94910 1474 aa26.36■■□□□ 1.81
RTN3-211ENST00000542238 ABCA8O94911 1581 aa26.32■■□□□ 1.8
RTN3-211ENST00000542238 PRXQ9BXM0 1461 aa26.3■■□□□ 1.8
RTN3-211ENST00000542238 FAM9AQ8IZU1 332 aaPredicted RBP26.3■■□□□ 1.8
RTN3-211ENST00000542238 CFAP43Q8NDM7 1665 aa26.3■■□□□ 1.8
RTN3-211ENST00000542238 KCNH8Q96L42 1107 aa26.29■■□□□ 1.8
RTN3-211ENST00000542238 CD109Q6YHK3 1445 aa26.27■■□□□ 1.8
RTN3-211ENST00000542238 MAGI3Q5TCQ9 1506 aa26.25■■□□□ 1.79
RTN3-211ENST00000542238 P3H3Q8IVL6 736 aa26.15■■□□□ 1.78
RTN3-211ENST00000542238 ARID3CA6NKF2 412 aa26.12■■□□□ 1.77
RTN3-211ENST00000542238 CSRNP3Q8WYN3 585 aa26.1■■□□□ 1.77
RTN3-211ENST00000542238 ATP10BO94823 1461 aa26.1■■□□□ 1.77
RTN3-211ENST00000542238 SAMD9Q5K651 1589 aa26.06■■□□□ 1.76
RTN3-211ENST00000542238 HECW2Q9P2P5 1572 aa26.06■■□□□ 1.76
RTN3-211ENST00000542238 ARAP3Q8WWN8 1544 aa26.05■■□□□ 1.76
RTN3-211ENST00000542238 ABCA9Q8IUA7 1624 aa26.03■■□□□ 1.76
RTN3-211ENST00000542238 KIF21BO75037 1637 aa26.03■■□□□ 1.76
RTN3-211ENST00000542238 RAPGEF6Q8TEU7 1601 aa26.03■■□□□ 1.76
RTN3-211ENST00000542238 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.01■■□□□ 1.75
RTN3-211ENST00000542238 HNRNPUL2Q1KMD3 747 aaKnown RBP26.01■■□□□ 1.75
RTN3-211ENST00000542238 PHLDB1Q86UU1 1377 aa26.01■■□□□ 1.75
RTN3-211ENST00000542238 ILDR1Q86SU0 546 aaPredicted RBP26■■□□□ 1.75
RTN3-211ENST00000542238 EEA1Q15075 1411 aa25.96■■□□□ 1.75
RTN3-211ENST00000542238 RANGAP1P46060 587 aaPredicted RBP25.93■■□□□ 1.74
RTN3-211ENST00000542238 NEO1Q92859 1461 aa25.92■■□□□ 1.74
RTN3-211ENST00000542238 RAPGEF3O95398 923 aa25.89■■□□□ 1.74
RTN3-211ENST00000542238 NUP153P49790 1475 aaKnown RBP25.89■■□□□ 1.73
RTN3-211ENST00000542238 FHOD3Q2V2M9 1422 aa25.87■■□□□ 1.73
RTN3-211ENST00000542238 PLEKHD1A6NEE1 506 aa25.85■■□□□ 1.73
RTN3-211ENST00000542238 ADAMTSL3P82987 1691 aa25.82■■□□□ 1.72
RTN3-211ENST00000542238 FRMPD1Q5SYB0 1578 aa25.79■■□□□ 1.72
RTN3-211ENST00000542238 ARID4BQ4LE39 1312 aaPredicted RBP25.79■■□□□ 1.72
RTN3-211ENST00000542238 PTPRMP28827 1452 aa25.79■■□□□ 1.72
RTN3-211ENST00000542238 EFCAB5A4FU69 1503 aa25.78■■□□□ 1.72
RTN3-211ENST00000542238 CFAP74Q9C0B2 1584 aa25.76■■□□□ 1.71
RTN3-211ENST00000542238 BCORL1Q5H9F3 1711 aa25.76■■□□□ 1.71
RTN3-211ENST00000542238 DENND4BO75064 1496 aaPredicted RBP25.74■■□□□ 1.71
RTN3-211ENST00000542238 AKNAQ7Z591 1439 aa25.72■■□□□ 1.71
RTN3-211ENST00000542238 FANCAO15360 1455 aa25.72■■□□□ 1.71
RTN3-211ENST00000542238 RICTORQ6R327 1708 aa25.71■■□□□ 1.71
RTN3-211ENST00000542238 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP25.71■■□□□ 1.711e-77■■□□□ 12.1
RTN3-211ENST00000542238 ARHGEF40Q8TER5 1519 aa25.7■■□□□ 1.7
RTN3-211ENST00000542238 MADDQ8WXG6 1647 aa25.7■■□□□ 1.7
RTN3-211ENST00000542238 TTC37Q6PGP7 1564 aa25.67■■□□□ 1.7
RTN3-211ENST00000542238 CDK13Q14004 1512 aaKnown RBP25.63■■□□□ 1.69
RTN3-211ENST00000542238 RIMS1Q86UR5 1692 aaKnown RBP25.62■■□□□ 1.69
RTN3-211ENST00000542238 UBTFP17480 764 aaKnown RBP25.61■■□□□ 1.69
RTN3-211ENST00000542238 ZMYM4Q5VZL5 1548 aa25.61■■□□□ 1.69
RTN3-211ENST00000542238 POGZQ7Z3K3 1410 aa25.61■■□□□ 1.69
RTN3-211ENST00000542238 PCF11O94913 1555 aaKnown RBP25.6■■□□□ 1.69
RTN3-211ENST00000542238 ZFYVE16Q7Z3T8 1539 aa25.59■■□□□ 1.69
RTN3-211ENST00000542238 ATP1B4Q9UN42 357 aaPredicted RBP25.59■■□□□ 1.69
RTN3-211ENST00000542238 MAGI2Q86UL8 1455 aa25.58■■□□□ 1.69
RTN3-211ENST00000542238 FMN1Q68DA7 1419 aa25.57■■□□□ 1.68
RTN3-211ENST00000542238 EHMT2Q96KQ7 1210 aa25.57■■□□□ 1.68
RTN3-211ENST00000542238 HECW1Q76N89 1606 aa25.56■■□□□ 1.68
RTN3-211ENST00000542238 PLCH2O75038 1416 aa25.55■■□□□ 1.68
RTN3-211ENST00000542238 LMTK3Q96Q04 1460 aa25.54■■□□□ 1.68
RTN3-211ENST00000542238 FBXO41Q8TF61 875 aa25.54■■□□□ 1.68
RTN3-211ENST00000542238 CDK11AQ9UQ88 783 aaPredicted RBP25.54■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms