RNA–Protein interactions for RNA: ENST00000541416.5

SNHG1-216, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 996 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-216ENST00000541416 KIF13AQ9H1H9 1805 aa21.7■■□□□ 1.06
SNHG1-216ENST00000541416 RUSC2Q8N2Y8 1516 aa21.68■■□□□ 1.06
SNHG1-216ENST00000541416 FAM69CQ0P6D2 419 aa21.62■■□□□ 1.05
SNHG1-216ENST00000541416 MAPKBP1O60336 1514 aa21.61■■□□□ 1.05
SNHG1-216ENST00000541416 ABCC10Q5T3U5 1492 aa21.61■■□□□ 1.05
SNHG1-216ENST00000541416 KIAA0586Q9BVV6 1533 aa21.59■■□□□ 1.05
SNHG1-216ENST00000541416 KIF27Q86VH2 1401 aa21.58■■□□□ 1.05
SNHG1-216ENST00000541416 CUL7Q14999 1698 aa21.56■■□□□ 1.04
SNHG1-216ENST00000541416 ADCY10Q96PN6 1610 aa21.54■■□□□ 1.04
SNHG1-216ENST00000541416 IGF1RP08069 1367 aa21.53■■□□□ 1.04
SNHG1-216ENST00000541416 DIP2BQ9P265 1576 aa21.53■■□□□ 1.04
SNHG1-216ENST00000541416 KDM6BO15054 1643 aa21.45■■□□□ 1.02
SNHG1-216ENST00000541416 PTPRGP23470 1445 aa21.45■■□□□ 1.02
SNHG1-216ENST00000541416 CARMIL2Q6F5E8 1435 aa21.45■■□□□ 1.02
SNHG1-216ENST00000541416 CARMIL1Q5VZK9 1371 aa21.42■■□□□ 1.02
SNHG1-216ENST00000541416 TSPOAP1O95153 1857 aa21.4■■□□□ 1.02
SNHG1-216ENST00000541416 TNIKQ9UKE5 1360 aa21.38■■□□□ 1.01
SNHG1-216ENST00000541416 TTBK1Q5TCY1 1321 aaPredicted RBP21.37■■□□□ 1.01
SNHG1-216ENST00000541416 ABCC2Q92887 1545 aa21.35■■□□□ 1.01
SNHG1-216ENST00000541416 IQGAP2Q13576 1575 aa21.35■■□□□ 1.01
SNHG1-216ENST00000541416 PLB1Q6P1J6 1458 aa21.32■■□□□ 1
SNHG1-216ENST00000541416 UHRF1BP1LA0JNW5 1464 aa21.29■■□□□ 1
SNHG1-216ENST00000541416 ASXL2Q76L83 1435 aa21.29■■□□□ 1
SNHG1-216ENST00000541416 KDM4FA0A1W2PPD8 638 aa21.27■■□□□ 1
SNHG1-216ENST00000541416 GLI2P10070 1586 aa21.27■□□□□ 0.99
SNHG1-216ENST00000541416 UACAQ9BZF9 1416 aa21.26■□□□□ 0.99
SNHG1-216ENST00000541416 RAPGEF2Q9Y4G8 1499 aa21.21■□□□□ 0.99
SNHG1-216ENST00000541416 DISP1Q96F81 1524 aa21.2■□□□□ 0.98
SNHG1-216ENST00000541416 UGGT2Q9NYU1 1516 aa21.18■□□□□ 0.98
SNHG1-216ENST00000541416 KDM5BQ9UGL1 1544 aa21.18■□□□□ 0.98
SNHG1-216ENST00000541416 TEX14Q8IWB6 1497 aa21.17■□□□□ 0.98
SNHG1-216ENST00000541416 PPRC1Q5VV67 1664 aaKnown RBP21.17■□□□□ 0.98
SNHG1-216ENST00000541416 EPRSP07814 1512 aaKnown RBP21.15■□□□□ 0.98
SNHG1-216ENST00000541416 KIAA0556O60303 1618 aa21.13■□□□□ 0.97
SNHG1-216ENST00000541416 MAP3K4Q9Y6R4 1608 aa21.13■□□□□ 0.97
SNHG1-216ENST00000541416 ZCCHC11Q5TAX3 1644 aaKnown RBP21.12■□□□□ 0.97
SNHG1-216ENST00000541416 ADGRL1O94910 1474 aa21.09■□□□□ 0.97
SNHG1-216ENST00000541416 GOLGA3Q08378 1498 aa21.07■□□□□ 0.96
SNHG1-216ENST00000541416 WDR7Q9Y4E6 1490 aa21.07■□□□□ 0.96
SNHG1-216ENST00000541416 FAM9AQ8IZU1 332 aaPredicted RBP21.04■□□□□ 0.96
SNHG1-216ENST00000541416 CTTNBP2Q8WZ74 1663 aa21.04■□□□□ 0.96
SNHG1-216ENST00000541416 COL17A1Q9UMD9 1497 aaPredicted RBP21.03■□□□□ 0.96
SNHG1-216ENST00000541416 CD109Q6YHK3 1445 aa20.97■□□□□ 0.95
SNHG1-216ENST00000541416 CFAP43Q8NDM7 1665 aa20.97■□□□□ 0.95
SNHG1-216ENST00000541416 MAGI3Q5TCQ9 1506 aa20.95■□□□□ 0.94
SNHG1-216ENST00000541416 KCNH8Q96L42 1107 aa20.95■□□□□ 0.94
SNHG1-216ENST00000541416 ABCA8O94911 1581 aa20.93■□□□□ 0.94
SNHG1-216ENST00000541416 ILDR1Q86SU0 546 aaPredicted RBP20.9■□□□□ 0.94
SNHG1-216ENST00000541416 PRXQ9BXM0 1461 aa20.88■□□□□ 0.93
SNHG1-216ENST00000541416 HECW2Q9P2P5 1572 aa20.86■□□□□ 0.93
SNHG1-216ENST00000541416 PHLDB1Q86UU1 1377 aa20.81■□□□□ 0.92
SNHG1-216ENST00000541416 ARAP3Q8WWN8 1544 aa20.8■□□□□ 0.92
SNHG1-216ENST00000541416 P3H3Q8IVL6 736 aa20.77■□□□□ 0.92
SNHG1-216ENST00000541416 ATP10BO94823 1461 aa20.76■□□□□ 0.91
SNHG1-216ENST00000541416 KIF21BO75037 1637 aa20.76■□□□□ 0.91
SNHG1-216ENST00000541416 ARID3CA6NKF2 412 aa20.76■□□□□ 0.91
SNHG1-216ENST00000541416 ABCA9Q8IUA7 1624 aa20.73■□□□□ 0.91
SNHG1-216ENST00000541416 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.72■□□□□ 0.91
SNHG1-216ENST00000541416 HNRNPUL2Q1KMD3 747 aaKnown RBP20.72■□□□□ 0.91
SNHG1-216ENST00000541416 CSRNP3Q8WYN3 585 aa20.7■□□□□ 0.9
SNHG1-216ENST00000541416 RAPGEF6Q8TEU7 1601 aa20.7■□□□□ 0.9
SNHG1-216ENST00000541416 NEO1Q92859 1461 aa20.69■□□□□ 0.9
SNHG1-216ENST00000541416 SAMD9Q5K651 1589 aa20.69■□□□□ 0.9
SNHG1-216ENST00000541416 RAPGEF3O95398 923 aa20.64■□□□□ 0.89
SNHG1-216ENST00000541416 EEA1Q15075 1411 aa20.62■□□□□ 0.89
SNHG1-216ENST00000541416 PTPRMP28827 1452 aa20.62■□□□□ 0.89
SNHG1-216ENST00000541416 ARID4BQ4LE39 1312 aaPredicted RBP20.61■□□□□ 0.89
SNHG1-216ENST00000541416 ADAMTSL3P82987 1691 aa20.61■□□□□ 0.89
SNHG1-216ENST00000541416 PLEKHD1A6NEE1 506 aa20.6■□□□□ 0.89
SNHG1-216ENST00000541416 NUP153P49790 1475 aaKnown RBP20.59■□□□□ 0.89
SNHG1-216ENST00000541416 RANGAP1P46060 587 aaPredicted RBP20.56■□□□□ 0.88
SNHG1-216ENST00000541416 BCORL1Q5H9F3 1711 aa20.56■□□□□ 0.88
SNHG1-216ENST00000541416 CFAP74Q9C0B2 1584 aa20.55■□□□□ 0.88
SNHG1-216ENST00000541416 DENND4BO75064 1496 aaPredicted RBP20.55■□□□□ 0.88
SNHG1-216ENST00000541416 FHOD3Q2V2M9 1422 aa20.53■□□□□ 0.88
SNHG1-216ENST00000541416 FBXO41Q8TF61 875 aa20.53■□□□□ 0.88
SNHG1-216ENST00000541416 FRMPD1Q5SYB0 1578 aa20.53■□□□□ 0.88
SNHG1-216ENST00000541416 MADDQ8WXG6 1647 aa20.51■□□□□ 0.87
SNHG1-216ENST00000541416 EFCAB5A4FU69 1503 aa20.51■□□□□ 0.87
SNHG1-216ENST00000541416 ARHGEF40Q8TER5 1519 aa20.51■□□□□ 0.87
SNHG1-216ENST00000541416 FANCAO15360 1455 aa20.5■□□□□ 0.87
SNHG1-216ENST00000541416 POGZQ7Z3K3 1410 aa20.5■□□□□ 0.87
SNHG1-216ENST00000541416 AKNAQ7Z591 1439 aa20.5■□□□□ 0.87
SNHG1-216ENST00000541416 PCF11O94913 1555 aaKnown RBP20.48■□□□□ 0.87
SNHG1-216ENST00000541416 RICTORQ6R327 1708 aa20.47■□□□□ 0.87
SNHG1-216ENST00000541416 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP20.45■□□□□ 0.86
SNHG1-216ENST00000541416 RIMS1Q86UR5 1692 aaKnown RBP20.43■□□□□ 0.86
SNHG1-216ENST00000541416 MAGI2Q86UL8 1455 aa20.43■□□□□ 0.86
SNHG1-216ENST00000541416 ZMYM4Q5VZL5 1548 aa20.43■□□□□ 0.86
SNHG1-216ENST00000541416 LMTK3Q96Q04 1460 aa20.42■□□□□ 0.86
SNHG1-216ENST00000541416 ZFYVE16Q7Z3T8 1539 aa20.42■□□□□ 0.86
SNHG1-216ENST00000541416 TTC37Q6PGP7 1564 aa20.41■□□□□ 0.86
SNHG1-216ENST00000541416 CDK11AQ9UQ88 783 aaPredicted RBP20.37■□□□□ 0.85
SNHG1-216ENST00000541416 PLCH2O75038 1416 aa20.36■□□□□ 0.85
SNHG1-216ENST00000541416 FMN1Q68DA7 1419 aa20.36■□□□□ 0.85
SNHG1-216ENST00000541416 PLPPR3Q6T4P5 718 aa20.35■□□□□ 0.85
SNHG1-216ENST00000541416 SCAPERQ9BY12 1400 aa20.35■□□□□ 0.85
SNHG1-216ENST00000541416 CDK13Q14004 1512 aaKnown RBP20.34■□□□□ 0.85
SNHG1-216ENST00000541416 ATP1B4Q9UN42 357 aaPredicted RBP20.34■□□□□ 0.85
SNHG1-216ENST00000541416 YEATS2Q9ULM3 1422 aa20.34■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms