RNA–Protein interactions for RNA: ENST00000536548.5

CPSF7-216, Transcript of cleavage and polyadenylation specific factor 7, humanhuman

TSL 4

Gene CPSF7, Length 598 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7-216ENST00000536548 FBXO41Q8TF61 875 aa12.52□□□□□ -0.41
CPSF7-216ENST00000536548 PCGF6Q9BYE7 350 aa12.52□□□□□ -0.41
CPSF7-216ENST00000536548 NUP160Q12769 1436 aa12.48□□□□□ -0.41
CPSF7-216ENST00000536548 ABCA5Q8WWZ7 1642 aa12.48□□□□□ -0.41
CPSF7-216ENST00000536548 MAPKBP1O60336 1514 aa12.47□□□□□ -0.41
CPSF7-216ENST00000536548 NPM1P06748 294 aaKnown RBP eCLIP12.46□□□□□ -0.41
CPSF7-216ENST00000536548 PRG4Q92954 1404 aaPredicted RBP12.45□□□□□ -0.42
CPSF7-216ENST00000536548 LMTK3Q96Q04 1460 aa12.43□□□□□ -0.42
CPSF7-216ENST00000536548 PELP1Q8IZL8 1130 aaKnown RBP12.43□□□□□ -0.42
CPSF7-216ENST00000536548 ADAMTS12P58397 1594 aa12.43□□□□□ -0.42
CPSF7-216ENST00000536548 ADCY10Q96PN6 1610 aa12.42□□□□□ -0.42
CPSF7-216ENST00000536548 ABCA10Q8WWZ4 1543 aa12.41□□□□□ -0.42
CPSF7-216ENST00000536548 JPH4Q96JJ6 628 aa12.4□□□□□ -0.42
CPSF7-216ENST00000536548 ZEB1P37275 1124 aaPredicted RBP12.37□□□□□ -0.43
CPSF7-216ENST00000536548 ILDR2Q71H61 639 aa12.36□□□□□ -0.43
CPSF7-216ENST00000536548 PPRC1Q5VV67 1664 aaKnown RBP12.35□□□□□ -0.43
CPSF7-216ENST00000536548 COL17A1Q9UMD9 1497 aaPredicted RBP12.35□□□□□ -0.43
CPSF7-216ENST00000536548 TRIM26Q12899 539 aaPredicted RBP12.35□□□□□ -0.43
CPSF7-216ENST00000536548 FHAD1B1AJZ9 1412 aa12.34□□□□□ -0.43
CPSF7-216ENST00000536548 PPARGC1BQ86YN6 1023 aaKnown RBP12.33□□□□□ -0.44
CPSF7-216ENST00000536548 SOCS7O14512 581 aa12.32□□□□□ -0.44
CPSF7-216ENST00000536548 RUSC2Q8N2Y8 1516 aa12.27□□□□□ -0.44
CPSF7-216ENST00000536548 TTBK1Q5TCY1 1321 aaPredicted RBP12.25□□□□□ -0.45
CPSF7-216ENST00000536548 DISP3Q9P2K9 1392 aa12.24□□□□□ -0.45
CPSF7-216ENST00000536548 WRNQ14191 1432 aaPredicted RBP eCLIP12.23□□□□□ -0.45
CPSF7-216ENST00000536548 TOP2BQ02880 1626 aa12.22□□□□□ -0.45
CPSF7-216ENST00000536548 GLI2P10070 1586 aa12.22□□□□□ -0.45
CPSF7-216ENST00000536548 ERICH3Q5RHP9 1530 aa12.22□□□□□ -0.45
CPSF7-216ENST00000536548 ASXL2Q76L83 1435 aa12.22□□□□□ -0.45
CPSF7-216ENST00000536548 CUL7Q14999 1698 aa12.19□□□□□ -0.46
CPSF7-216ENST00000536548 MAP3K4Q9Y6R4 1608 aa12.18□□□□□ -0.46
CPSF7-216ENST00000536548 PLB1Q6P1J6 1458 aa12.17□□□□□ -0.46
CPSF7-216ENST00000536548 LOC105371045A0A1W2PR82 267 aa12.17□□□□□ -0.46
CPSF7-216ENST00000536548 ABCC2Q92887 1545 aa12.16□□□□□ -0.46
CPSF7-216ENST00000536548 PTPRGP23470 1445 aa12.16□□□□□ -0.46
CPSF7-216ENST00000536548 KIF21BO75037 1637 aa12.15□□□□□ -0.47
CPSF7-216ENST00000536548 EPRSP07814 1512 aaKnown RBP12.13□□□□□ -0.47
CPSF7-216ENST00000536548 TEX14Q8IWB6 1497 aa12.13□□□□□ -0.47
CPSF7-216ENST00000536548 BIVM-ERCC5R4GMW8 1640 aa12.11□□□□□ -0.47
CPSF7-216ENST00000536548 KIAA0586Q9BVV6 1533 aa12.11□□□□□ -0.47
CPSF7-216ENST00000536548 PTPRMP28827 1452 aa12.1□□□□□ -0.47
CPSF7-216ENST00000536548 CERKQ8TCT0 537 aa12.09□□□□□ -0.47
CPSF7-216ENST00000536548 PCF11O94913 1555 aaKnown RBP12.08□□□□□ -0.48
CPSF7-216ENST00000536548 HSPA2P54652 639 aa12.06□□□□□ -0.48
CPSF7-216ENST00000536548 TNIKQ9UKE5 1360 aa12.05□□□□□ -0.48
CPSF7-216ENST00000536548 ADAMTSL3P82987 1691 aa12.05□□□□□ -0.48
CPSF7-216ENST00000536548 SPATA31D1Q6ZQQ2 1576 aa12.05□□□□□ -0.48
CPSF7-216ENST00000536548 UHRF1BP1LA0JNW5 1464 aa12.04□□□□□ -0.48
CPSF7-216ENST00000536548 ZCCHC11Q5TAX3 1644 aaKnown RBP12.04□□□□□ -0.48
CPSF7-216ENST00000536548 UACAQ9BZF9 1416 aa12.03□□□□□ -0.48
CPSF7-216ENST00000536548 KDM5BQ9UGL1 1544 aa12.02□□□□□ -0.48
CPSF7-216ENST00000536548 MYT1Q01538 1121 aa12□□□□□ -0.49
CPSF7-216ENST00000536548 CARMIL2Q6F5E8 1435 aa12□□□□□ -0.49
CPSF7-216ENST00000536548 MADDQ8WXG6 1647 aa11.99□□□□□ -0.49
CPSF7-216ENST00000536548 CD109Q6YHK3 1445 aa11.98□□□□□ -0.49
CPSF7-216ENST00000536548 MAGI3Q5TCQ9 1506 aa11.97□□□□□ -0.49
CPSF7-216ENST00000536548 PLPPR3Q6T4P5 718 aa11.97□□□□□ -0.49
CPSF7-216ENST00000536548 KCNH8Q96L42 1107 aa11.97□□□□□ -0.49
CPSF7-216ENST00000536548 WDR7Q9Y4E6 1490 aa11.96□□□□□ -0.49
CPSF7-216ENST00000536548 IGF1RP08069 1367 aa11.96□□□□□ -0.49
CPSF7-216ENST00000536548 BCORL1Q5H9F3 1711 aa11.95□□□□□ -0.5
CPSF7-216ENST00000536548 CFAP43Q8NDM7 1665 aa11.95□□□□□ -0.5
CPSF7-216ENST00000536548 SCAF1Q9H7N4 1312 aaKnown RBP11.94□□□□□ -0.5
CPSF7-216ENST00000536548 DISP1Q96F81 1524 aa11.94□□□□□ -0.5
CPSF7-216ENST00000536548 RIMS1Q86UR5 1692 aaKnown RBP11.93□□□□□ -0.5
CPSF7-216ENST00000536548 ARID4BQ4LE39 1312 aaPredicted RBP11.92□□□□□ -0.5
CPSF7-216ENST00000536548 IQGAP2Q13576 1575 aa11.92□□□□□ -0.5
CPSF7-216ENST00000536548 ARAP3Q8WWN8 1544 aa11.91□□□□□ -0.5
CPSF7-216ENST00000536548 RAPGEF3O95398 923 aa11.9□□□□□ -0.5
CPSF7-216ENST00000536548 CARMIL1Q5VZK9 1371 aa11.85□□□□□ -0.51
CPSF7-216ENST00000536548 KIF27Q86VH2 1401 aa11.84□□□□□ -0.51
CPSF7-216ENST00000536548 ACIN1Q9UKV3 1341 aaKnown RBP11.84□□□□□ -0.51
CPSF7-216ENST00000536548 CENPBP07199 599 aaPredicted RBP11.83□□□□□ -0.52
CPSF7-216ENST00000536548 KIAA0556O60303 1618 aa11.82□□□□□ -0.52
CPSF7-216ENST00000536548 STRCQ7RTU9 1775 aa11.82□□□□□ -0.52
CPSF7-216ENST00000536548 FRMPD1Q5SYB0 1578 aa11.81□□□□□ -0.52
CPSF7-216ENST00000536548 UGGT2Q9NYU1 1516 aa11.8□□□□□ -0.52
CPSF7-216ENST00000536548 ARID3CA6NKF2 412 aa11.79□□□□□ -0.52
CPSF7-216ENST00000536548 SIGLEC1Q9BZZ2 1709 aa11.79□□□□□ -0.52
CPSF7-216ENST00000536548 FAM9AQ8IZU1 332 aaPredicted RBP11.77□□□□□ -0.53
CPSF7-216ENST00000536548 YEATS2Q9ULM3 1422 aa11.77□□□□□ -0.53
CPSF7-216ENST00000536548 MLECQ14165 292 aa11.76□□□□□ -0.53
CPSF7-216ENST00000536548 ABCA8O94911 1581 aa11.75□□□□□ -0.53
CPSF7-216ENST00000536548 ARHGEF40Q8TER5 1519 aa11.75□□□□□ -0.53
CPSF7-216ENST00000536548 PREX1Q8TCU6 1659 aa11.75□□□□□ -0.53
CPSF7-216ENST00000536548 CCER1Q8TC90 406 aaPredicted RBP11.74□□□□□ -0.53
CPSF7-216ENST00000536548 DMRT2Q9Y5R5 561 aa11.74□□□□□ -0.53
CPSF7-216ENST00000536548 PHLDB1Q86UU1 1377 aa11.74□□□□□ -0.53
CPSF7-216ENST00000536548 ABCA9Q8IUA7 1624 aa11.74□□□□□ -0.53
CPSF7-216ENST00000536548 FER1L4A9Z1Z3 1794 aa11.74□□□□□ -0.53
CPSF7-216ENST00000536548 CEBPAP49715 358 aaPredicted RBP11.73□□□□□ -0.53
CPSF7-216ENST00000536548 LTBP4Q8N2S1 1624 aa11.73□□□□□ -0.53
CPSF7-216ENST00000536548 NEO1Q92859 1461 aa11.71□□□□□ -0.53
CPSF7-216ENST00000536548 RICTORQ6R327 1708 aa11.71□□□□□ -0.54
CPSF7-216ENST00000536548 TTC37Q6PGP7 1564 aa11.71□□□□□ -0.54
CPSF7-216ENST00000536548 FANCAO15360 1455 aa11.7□□□□□ -0.54
CPSF7-216ENST00000536548 POGZQ7Z3K3 1410 aa11.69□□□□□ -0.54
CPSF7-216ENST00000536548 DIEXFQ68CQ4 756 aaKnown RBP11.69□□□□□ -0.54
CPSF7-216ENST00000536548 ATP10BO94823 1461 aa11.69□□□□□ -0.54
CPSF7-216ENST00000536548 NEUROD1Q13562 356 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms