RNA–Protein interactions for RNA: ENST00000534143.5

CMTM1-220, Transcript of CKLF like MARVEL transmembrane domain containing 1, humanhuman

TSL 1 (best)

Gene CMTM1, Length 781 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM1-220ENST00000534143 CD44P16070 742 aaKnown RBP11.22□□□□□ -0.61
CMTM1-220ENST00000534143 VASPP50552 380 aaPredicted RBP11.15□□□□□ -0.62
CMTM1-220ENST00000534143 ZBTB47Q9UFB7 747 aaPredicted RBP11.14□□□□□ -0.63
CMTM1-220ENST00000534143 ZRANB1Q9UGI0 708 aa11.13□□□□□ -0.63
CMTM1-220ENST00000534143 PAK3O75914 559 aaPredicted RBP11.11□□□□□ -0.63
CMTM1-220ENST00000534143 CECR2Q9BXF3 1484 aa11.11□□□□□ -0.63
CMTM1-220ENST00000534143 ZNF579Q8NAF0 562 aaKnown RBP11.08□□□□□ -0.64
CMTM1-220ENST00000534143 CC2D2AQ9P2K1 1620 aa11.07□□□□□ -0.64
CMTM1-220ENST00000534143 GABBR2O75899 941 aa11.07□□□□□ -0.64
CMTM1-220ENST00000534143 CLCN6P51797 869 aa11.06□□□□□ -0.64
CMTM1-220ENST00000534143 NUBP1P53384 320 aa11.04□□□□□ -0.64
CMTM1-220ENST00000534143 EIF4G1Q04637 1599 aaKnown RBP11.03□□□□□ -0.64
CMTM1-220ENST00000534143 BAZ1AQ9NRL2 1556 aaPredicted RBP11.03□□□□□ -0.64
CMTM1-220ENST00000534143 RASEFQ8IZ41 740 aa11.03□□□□□ -0.64
CMTM1-220ENST00000534143 TSPYL2Q9H2G4 693 aaPredicted RBP11.03□□□□□ -0.64
CMTM1-220ENST00000534143 MROH2BQ7Z745 1585 aa11.03□□□□□ -0.64
CMTM1-220ENST00000534143 SMARCA4P51532 1647 aa11.02□□□□□ -0.65
CMTM1-220ENST00000534143 KLHL34Q8N239 644 aa11.01□□□□□ -0.65
CMTM1-220ENST00000534143 RSF1Q96T23 1441 aaPredicted RBP11.01□□□□□ -0.65
CMTM1-220ENST00000534143 CCDC61Q9Y6R9 512 aa10.99□□□□□ -0.65
CMTM1-220ENST00000534143 IFNLR1Q8IU57 520 aaPredicted RBP10.98□□□□□ -0.65
CMTM1-220ENST00000534143 PHF12Q96QT6 1004 aa10.98□□□□□ -0.65
CMTM1-220ENST00000534143 FAM212AQ96EL1 285 aa10.94□□□□□ -0.66
CMTM1-220ENST00000534143 SUPT5HO00267 1087 aaKnown RBP10.93□□□□□ -0.66
CMTM1-220ENST00000534143 WIZO95785 1651 aa10.92□□□□□ -0.66
CMTM1-220ENST00000534143 PEG3Q9GZU2 1588 aa10.91□□□□□ -0.66
CMTM1-220ENST00000534143 GALR2O43603 387 aaPredicted RBP10.91□□□□□ -0.66
CMTM1-220ENST00000534143 DCAF8Q5TAQ9 597 aa10.9□□□□□ -0.66
CMTM1-220ENST00000534143 SPOCK2Q92563 424 aa10.9□□□□□ -0.66
CMTM1-220ENST00000534143 KIF12Q96FN5 646 aa10.89□□□□□ -0.67
CMTM1-220ENST00000534143 ATAD2BQ9ULI0 1458 aa10.88□□□□□ -0.67
CMTM1-220ENST00000534143 SMARCA2P51531 1590 aa10.86□□□□□ -0.67
CMTM1-220ENST00000534143 MS4A3Q96HJ5 214 aa10.86□□□□□ -0.67
CMTM1-220ENST00000534143 GSE1Q14687 1217 aa10.85□□□□□ -0.67
CMTM1-220ENST00000534143 MAP3K13O43283 966 aa10.84□□□□□ -0.67
CMTM1-220ENST00000534143 POTEIP0CG38 1075 aa10.84□□□□□ -0.67
CMTM1-220ENST00000534143 DCBLD2Q96PD2 775 aa10.84□□□□□ -0.67
CMTM1-220ENST00000534143 NCAPD3P42695 1498 aa10.84□□□□□ -0.67
CMTM1-220ENST00000534143 SGIP1Q9BQI5 828 aa10.81□□□□□ -0.68
CMTM1-220ENST00000534143 TOP2AP11388 1531 aaKnown RBP10.8□□□□□ -0.68
CMTM1-220ENST00000534143 HMGXB3Q12766 1538 aa10.79□□□□□ -0.68
CMTM1-220ENST00000534143 BAZ1BQ9UIG0 1483 aaKnown RBP10.79□□□□□ -0.68
CMTM1-220ENST00000534143 PYGBP11216 843 aa10.78□□□□□ -0.68
CMTM1-220ENST00000534143 LHX8Q68G74 356 aa10.78□□□□□ -0.68
CMTM1-220ENST00000534143 PCDHB13Q9Y5F0 798 aa10.78□□□□□ -0.68
CMTM1-220ENST00000534143 CIZ1Q9ULV3 898 aaPredicted RBP10.76□□□□□ -0.69
CMTM1-220ENST00000534143 CHRM1P11229 460 aaPredicted RBP10.74□□□□□ -0.69
CMTM1-220ENST00000534143 ASTLQ6HA08 431 aaPredicted RBP10.73□□□□□ -0.69
CMTM1-220ENST00000534143 IFNL1Q8IU54 200 aa10.73□□□□□ -0.69
CMTM1-220ENST00000534143 TRPC6Q9Y210 931 aa10.73□□□□□ -0.69
CMTM1-220ENST00000534143 ATMINO43313 823 aaPredicted RBP10.71□□□□□ -0.69
CMTM1-220ENST00000534143 TIE1P35590 1138 aa10.7□□□□□ -0.7
CMTM1-220ENST00000534143 CCDC88BA6NC98 1476 aa10.69□□□□□ -0.7
CMTM1-220ENST00000534143 BMP2KQ9NSY1 1161 aaPredicted RBP10.69□□□□□ -0.7
CMTM1-220ENST00000534143 PELP1Q8IZL8 1130 aaKnown RBP10.68□□□□□ -0.7
CMTM1-220ENST00000534143 ATN1P54259 1190 aaPredicted RBP10.66□□□□□ -0.7
CMTM1-220ENST00000534143 TRIM41Q8WV44 630 aa10.66□□□□□ -0.7
CMTM1-220ENST00000534143 PCDHB8Q9UN66 801 aa10.66□□□□□ -0.7
CMTM1-220ENST00000534143 ZNF467Q7Z7K2 595 aaPredicted RBP10.65□□□□□ -0.7
CMTM1-220ENST00000534143 TTLL13PA6NNM8 815 aa10.64□□□□□ -0.71
CMTM1-220ENST00000534143 SLC39A7Q92504 469 aa10.6□□□□□ -0.71
CMTM1-220ENST00000534143 TMEM106CQ9BVX2 250 aa10.6□□□□□ -0.71
CMTM1-220ENST00000534143 C7P10643 843 aa10.59□□□□□ -0.71
CMTM1-220ENST00000534143 METRNQ9UJH8 293 aa10.57□□□□□ -0.72
CMTM1-220ENST00000534143 TRIM35Q9UPQ4 493 aa10.57□□□□□ -0.72
CMTM1-220ENST00000534143 PSEN1P49768 467 aa10.54□□□□□ -0.72
CMTM1-220ENST00000534143 CFTRP13569 1480 aa10.54□□□□□ -0.72
CMTM1-220ENST00000534143 ERCC6Q03468 1493 aa10.54□□□□□ -0.72
CMTM1-220ENST00000534143 CADPSQ9ULU8 1353 aa10.53□□□□□ -0.72
CMTM1-220ENST00000534143 PDAP1Q13442 181 aaKnown RBP10.53□□□□□ -0.72
CMTM1-220ENST00000534143 NESP48681 1621 aa10.52□□□□□ -0.73
CMTM1-220ENST00000534143 PKD2Q13563 968 aa10.51□□□□□ -0.73
CMTM1-220ENST00000534143 IER5LQ5T953 404 aa10.51□□□□□ -0.73
CMTM1-220ENST00000534143 RNF25Q96BH1 459 aaPredicted RBP10.5□□□□□ -0.73
CMTM1-220ENST00000534143 DNAJC5Q9H3Z4 198 aa10.5□□□□□ -0.73
CMTM1-220ENST00000534143 CUX2O14529 1486 aa10.49□□□□□ -0.73
CMTM1-220ENST00000534143 POTEFA5A3E0 1075 aa10.49□□□□□ -0.73
CMTM1-220ENST00000534143 POTEB2H3BUK9 544 aa10.49□□□□□ -0.73
CMTM1-220ENST00000534143 RIOK3O14730 519 aaKnown RBP10.49□□□□□ -0.73
CMTM1-220ENST00000534143 ECM2O94769 699 aaPredicted RBP10.49□□□□□ -0.73
CMTM1-220ENST00000534143 PRDM2Q13029 1718 aa10.49□□□□□ -0.73
CMTM1-220ENST00000534143 LAMC3Q9Y6N6 1575 aa10.48□□□□□ -0.73
CMTM1-220ENST00000534143 KIF21AQ7Z4S6 1674 aa10.46□□□□□ -0.74
CMTM1-220ENST00000534143 SEC24BO95487 1268 aa10.45□□□□□ -0.74
CMTM1-220ENST00000534143 COLQQ9Y215 455 aaPredicted RBP10.45□□□□□ -0.74
CMTM1-220ENST00000534143 THOC2Q8NI27 1593 aaKnown RBP10.44□□□□□ -0.74
CMTM1-220ENST00000534143 VGFO15240 615 aaPredicted RBP10.43□□□□□ -0.74
CMTM1-220ENST00000534143 IRX5P78411 483 aaPredicted RBP10.43□□□□□ -0.74
CMTM1-220ENST00000534143 GOLGA2Q08379 1002 aa10.43□□□□□ -0.74
CMTM1-220ENST00000534143 MKRN3Q13064 507 aaKnown RBP10.42□□□□□ -0.74
CMTM1-220ENST00000534143 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.4□□□□□ -0.74
CMTM1-220ENST00000534143 RGL2O15211 777 aa10.4□□□□□ -0.74
CMTM1-220ENST00000534143 POTEJP0CG39 1038 aa10.4□□□□□ -0.74
CMTM1-220ENST00000534143 ZFP91Q96JP5 570 aaPredicted RBP10.4□□□□□ -0.74
CMTM1-220ENST00000534143 CABP2Q9NPB3 220 aa10.4□□□□□ -0.74
CMTM1-220ENST00000534143 TAOK2Q9UL54 1235 aa10.4□□□□□ -0.74
CMTM1-220ENST00000534143 FANCD2Q9BXW9 1451 aa10.39□□□□□ -0.75
CMTM1-220ENST00000534143 PLCG2P16885 1265 aa10.39□□□□□ -0.75
CMTM1-220ENST00000534143 OCEL1Q9H607 264 aa10.39□□□□□ -0.75
CMTM1-220ENST00000534143 PDS5BQ9NTI5 1447 aa10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms