RNA–Protein interactions for RNA: ENST00000533523.5

CHMP4A-207, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 1 (best)

Gene CHMP4A, Length 1,266 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-207ENST00000533523 PRG4Q92954 1404 aaPredicted RBP28.08■■■□□ 2.09
CHMP4A-207ENST00000533523 ADCY10Q96PN6 1610 aa28.06■■■□□ 2.08
CHMP4A-207ENST00000533523 ABCC10Q5T3U5 1492 aa28.04■■■□□ 2.08
CHMP4A-207ENST00000533523 MAPKBP1O60336 1514 aa28.01■■■□□ 2.07
CHMP4A-207ENST00000533523 KDM4FA0A1W2PPD8 638 aa27.94■■■□□ 2.06
CHMP4A-207ENST00000533523 TSPOAP1O95153 1857 aa27.91■■■□□ 2.06
CHMP4A-207ENST00000533523 JPH4Q96JJ6 628 aa27.91■■■□□ 2.06
CHMP4A-207ENST00000533523 KDM6BO15054 1643 aa27.9■■■□□ 2.06
CHMP4A-207ENST00000533523 FAM69CQ0P6D2 419 aa27.9■■■□□ 2.06
CHMP4A-207ENST00000533523 PPRC1Q5VV67 1664 aaKnown RBP27.81■■■□□ 2.04
CHMP4A-207ENST00000533523 CUL7Q14999 1698 aa27.75■■■□□ 2.03
CHMP4A-207ENST00000533523 ILDR1Q86SU0 546 aaPredicted RBP27.7■■■□□ 2.02
CHMP4A-207ENST00000533523 KIAA0586Q9BVV6 1533 aa27.67■■■□□ 2.02
CHMP4A-207ENST00000533523 KIF27Q86VH2 1401 aa27.65■■■□□ 2.02
CHMP4A-207ENST00000533523 NPM1P06748 294 aaKnown RBP eCLIP27.59■■■□□ 2.01
CHMP4A-207ENST00000533523 IGF1RP08069 1367 aa27.59■■■□□ 2.01
CHMP4A-207ENST00000533523 ADGRL1O94910 1474 aa27.57■■■□□ 2
CHMP4A-207ENST00000533523 COL17A1Q9UMD9 1497 aaPredicted RBP27.57■■■□□ 2
CHMP4A-207ENST00000533523 GLI2P10070 1586 aa27.54■■■□□ 2
CHMP4A-207ENST00000533523 ABCC2Q92887 1545 aa27.52■■■□□ 2
CHMP4A-207ENST00000533523 ASXL2Q76L83 1435 aa27.49■■□□□ 1.99
CHMP4A-207ENST00000533523 HECW2Q9P2P5 1572 aa27.47■■□□□ 1.99
CHMP4A-207ENST00000533523 MAP3K4Q9Y6R4 1608 aa27.46■■□□□ 1.99
CHMP4A-207ENST00000533523 PTPRGP23470 1445 aa27.46■■□□□ 1.99
CHMP4A-207ENST00000533523 CARMIL1Q5VZK9 1371 aa27.45■■□□□ 1.98
CHMP4A-207ENST00000533523 IQGAP2Q13576 1575 aa27.43■■□□□ 1.98
CHMP4A-207ENST00000533523 TTBK1Q5TCY1 1321 aaPredicted RBP27.4■■□□□ 1.98
CHMP4A-207ENST00000533523 UHRF1BP1LA0JNW5 1464 aa27.39■■□□□ 1.98
CHMP4A-207ENST00000533523 DISP1Q96F81 1524 aa27.39■■□□□ 1.98
CHMP4A-207ENST00000533523 PLB1Q6P1J6 1458 aa27.38■■□□□ 1.97
CHMP4A-207ENST00000533523 TNIKQ9UKE5 1360 aa27.37■■□□□ 1.97
CHMP4A-207ENST00000533523 CARMIL2Q6F5E8 1435 aa27.37■■□□□ 1.97
CHMP4A-207ENST00000533523 EPRSP07814 1512 aaKnown RBP27.36■■□□□ 1.97
CHMP4A-207ENST00000533523 ZCCHC11Q5TAX3 1644 aaKnown RBP27.35■■□□□ 1.97
CHMP4A-207ENST00000533523 KDM5BQ9UGL1 1544 aa27.31■■□□□ 1.96
CHMP4A-207ENST00000533523 UACAQ9BZF9 1416 aa27.29■■□□□ 1.96
CHMP4A-207ENST00000533523 RAPGEF2Q9Y4G8 1499 aa27.22■■□□□ 1.95
CHMP4A-207ENST00000533523 KIAA0556O60303 1618 aa27.2■■□□□ 1.95
CHMP4A-207ENST00000533523 UGGT2Q9NYU1 1516 aa27.2■■□□□ 1.94
CHMP4A-207ENST00000533523 CTTNBP2Q8WZ74 1663 aa27.18■■□□□ 1.94
CHMP4A-207ENST00000533523 TEX14Q8IWB6 1497 aa27.15■■□□□ 1.94
CHMP4A-207ENST00000533523 KIF21BO75037 1637 aa27.12■■□□□ 1.93
CHMP4A-207ENST00000533523 WDR7Q9Y4E6 1490 aa27.1■■□□□ 1.93
CHMP4A-207ENST00000533523 CFAP43Q8NDM7 1665 aa27.06■■□□□ 1.92
CHMP4A-207ENST00000533523 MAGI3Q5TCQ9 1506 aa27.02■■□□□ 1.92
CHMP4A-207ENST00000533523 ABCA8O94911 1581 aa27.01■■□□□ 1.92
CHMP4A-207ENST00000533523 GOLGA3Q08378 1498 aa26.95■■□□□ 1.91
CHMP4A-207ENST00000533523 CD109Q6YHK3 1445 aa26.93■■□□□ 1.9
CHMP4A-207ENST00000533523 ADAMTSL3P82987 1691 aa26.92■■□□□ 1.9
CHMP4A-207ENST00000533523 PRXQ9BXM0 1461 aa26.86■■□□□ 1.89
CHMP4A-207ENST00000533523 ARAP3Q8WWN8 1544 aa26.85■■□□□ 1.89
CHMP4A-207ENST00000533523 FRMPD1Q5SYB0 1578 aa26.82■■□□□ 1.88
CHMP4A-207ENST00000533523 PTPRMP28827 1452 aa26.81■■□□□ 1.88
CHMP4A-207ENST00000533523 FBXO41Q8TF61 875 aa26.8■■□□□ 1.88
CHMP4A-207ENST00000533523 KCNH8Q96L42 1107 aa26.8■■□□□ 1.88
CHMP4A-207ENST00000533523 ABCA9Q8IUA7 1624 aa26.77■■□□□ 1.88
CHMP4A-207ENST00000533523 BCORL1Q5H9F3 1711 aa26.76■■□□□ 1.88
CHMP4A-207ENST00000533523 MADDQ8WXG6 1647 aa26.76■■□□□ 1.87
CHMP4A-207ENST00000533523 ATP10BO94823 1461 aa26.71■■□□□ 1.87
CHMP4A-207ENST00000533523 LMTK3Q96Q04 1460 aa26.71■■□□□ 1.87
CHMP4A-207ENST00000533523 PCF11O94913 1555 aaKnown RBP26.7■■□□□ 1.86
CHMP4A-207ENST00000533523 SIGLEC1Q9BZZ2 1709 aa26.7■■□□□ 1.86
CHMP4A-207ENST00000533523 SAMD9Q5K651 1589 aa26.68■■□□□ 1.86
CHMP4A-207ENST00000533523 ARID3CA6NKF2 412 aa26.68■■□□□ 1.86
CHMP4A-207ENST00000533523 P3H3Q8IVL6 736 aa26.66■■□□□ 1.86
CHMP4A-207ENST00000533523 RAPGEF6Q8TEU7 1601 aa26.65■■□□□ 1.86
CHMP4A-207ENST00000533523 RIMS1Q86UR5 1692 aaKnown RBP26.63■■□□□ 1.85
CHMP4A-207ENST00000533523 RAPGEF3O95398 923 aa26.62■■□□□ 1.85
CHMP4A-207ENST00000533523 FAM9AQ8IZU1 332 aaPredicted RBP26.62■■□□□ 1.85
CHMP4A-207ENST00000533523 ARHGEF40Q8TER5 1519 aa26.59■■□□□ 1.85
CHMP4A-207ENST00000533523 RICTORQ6R327 1708 aa26.59■■□□□ 1.85
CHMP4A-207ENST00000533523 NEO1Q92859 1461 aa26.55■■□□□ 1.84
CHMP4A-207ENST00000533523 CSRNP3Q8WYN3 585 aa26.53■■□□□ 1.84
CHMP4A-207ENST00000533523 NUP153P49790 1475 aaKnown RBP26.48■■□□□ 1.83
CHMP4A-207ENST00000533523 EEA1Q15075 1411 aa26.48■■□□□ 1.83
CHMP4A-207ENST00000533523 PHLDB1Q86UU1 1377 aa26.47■■□□□ 1.83
CHMP4A-207ENST00000533523 FHOD3Q2V2M9 1422 aa26.47■■□□□ 1.83
CHMP4A-207ENST00000533523 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.46■■□□□ 1.83
CHMP4A-207ENST00000533523 RANGAP1P46060 587 aaPredicted RBP26.46■■□□□ 1.83
CHMP4A-207ENST00000533523 HNRNPUL2Q1KMD3 747 aaKnown RBP26.46■■□□□ 1.83
CHMP4A-207ENST00000533523 HSPA2P54652 639 aa26.43■■□□□ 1.82
CHMP4A-207ENST00000533523 TTC37Q6PGP7 1564 aa26.4■■□□□ 1.82
CHMP4A-207ENST00000533523 ZMYM4Q5VZL5 1548 aa26.39■■□□□ 1.82
CHMP4A-207ENST00000533523 YEATS2Q9ULM3 1422 aa26.38■■□□□ 1.81
CHMP4A-207ENST00000533523 EFCAB5A4FU69 1503 aa26.37■■□□□ 1.81
CHMP4A-207ENST00000533523 CFAP74Q9C0B2 1584 aa26.36■■□□□ 1.81
CHMP4A-207ENST00000533523 FER1L4A9Z1Z3 1794 aa26.35■■□□□ 1.81
CHMP4A-207ENST00000533523 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP26.35■■□□□ 1.81
CHMP4A-207ENST00000533523 DENND4BO75064 1496 aaPredicted RBP26.34■■□□□ 1.81
CHMP4A-207ENST00000533523 ARID4BQ4LE39 1312 aaPredicted RBP26.34■■□□□ 1.81
CHMP4A-207ENST00000533523 AKNAQ7Z591 1439 aa26.31■■□□□ 1.8
CHMP4A-207ENST00000533523 ZFYVE16Q7Z3T8 1539 aa26.3■■□□□ 1.8
CHMP4A-207ENST00000533523 HECW1Q76N89 1606 aa26.3■■□□□ 1.8
CHMP4A-207ENST00000533523 FANCAO15360 1455 aa26.29■■□□□ 1.8
CHMP4A-207ENST00000533523 STRCQ7RTU9 1775 aa26.28■■□□□ 1.8
CHMP4A-207ENST00000533523 CDK13Q14004 1512 aaKnown RBP26.25■■□□□ 1.79
CHMP4A-207ENST00000533523 PLEKHD1A6NEE1 506 aa26.25■■□□□ 1.79
CHMP4A-207ENST00000533523 ILDR2Q71H61 639 aa26.25■■□□□ 1.79
CHMP4A-207ENST00000533523 CERKQ8TCT0 537 aa26.24■■□□□ 1.79
CHMP4A-207ENST00000533523 PLPPR3Q6T4P5 718 aa26.23■■□□□ 1.79
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms