RNA–Protein interactions for RNA: ENST00000533464.5

PHRF1-205, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,218 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-205ENST00000533464 MRS2Q9HD23 443 aa23.8■■□□□ 1.4
PHRF1-205ENST00000533464 EIF4G2P78344 907 aaKnown RBP eCLIP23.77■■□□□ 1.43e-7■■■□□ 15.9
PHRF1-205ENST00000533464 NPM2Q86SE8 214 aaKnown RBP23.76■■□□□ 1.39
PHRF1-205ENST00000533464 SCAF1Q9H7N4 1312 aaKnown RBP23.73■■□□□ 1.39
PHRF1-205ENST00000533464 PLEKHD1A6NEE1 506 aa23.73■■□□□ 1.39
PHRF1-205ENST00000533464 SOGA1O94964 1423 aa23.72■■□□□ 1.39
PHRF1-205ENST00000533464 KCNH8Q96L42 1107 aa23.69■■□□□ 1.38
PHRF1-205ENST00000533464 MROH2BQ7Z745 1585 aa23.65■■□□□ 1.38
PHRF1-205ENST00000533464 CFDP1Q9UEE9 299 aaPredicted RBP23.63■■□□□ 1.37
PHRF1-205ENST00000533464 PLPPR3Q6T4P5 718 aa23.63■■□□□ 1.37
PHRF1-205ENST00000533464 CCDC136Q96JN2 1154 aa23.63■■□□□ 1.37
PHRF1-205ENST00000533464 WDR43Q15061 677 aaKnown RBP eCLIP23.6■■□□□ 1.37
PHRF1-205ENST00000533464 IRX6P78412 446 aaPredicted RBP23.58■■□□□ 1.37
PHRF1-205ENST00000533464 SIN3AQ96ST3 1273 aa23.58■■□□□ 1.37
PHRF1-205ENST00000533464 RGL3Q3MIN7 710 aa23.57■■□□□ 1.36
PHRF1-205ENST00000533464 CCDC88BA6NC98 1476 aa23.55■■□□□ 1.36
PHRF1-205ENST00000533464 CARMIL1Q5VZK9 1371 aa23.54■■□□□ 1.36
PHRF1-205ENST00000533464 CUX2O14529 1486 aa23.51■■□□□ 1.35
PHRF1-205ENST00000533464 CCNB3Q8WWL7 1395 aa23.51■■□□□ 1.35
PHRF1-205ENST00000533464 GOLGA6L2Q8N9W4 650 aaPredicted RBP23.49■■□□□ 1.35
PHRF1-205ENST00000533464 ABCC8Q09428 1581 aa23.47■■□□□ 1.35
PHRF1-205ENST00000533464 FHAD1B1AJZ9 1412 aa23.46■■□□□ 1.35
PHRF1-205ENST00000533464 SENP3Q9H4L4 574 aaPredicted RBP23.44■■□□□ 1.34
PHRF1-205ENST00000533464 UPF2Q9HAU5 1272 aaKnown RBP23.43■■□□□ 1.34
PHRF1-205ENST00000533464 CARD11Q9BXL7 1154 aa23.4■■□□□ 1.34
PHRF1-205ENST00000533464 VPS8Q8N3P4 1428 aa23.4■■□□□ 1.34
PHRF1-205ENST00000533464 SENP3-EIF4A1A0A087X0R7 540 aa23.39■■□□□ 1.34
PHRF1-205ENST00000533464 KANK4Q5T7N3 995 aaPredicted RBP23.38■■□□□ 1.33
PHRF1-205ENST00000533464 HSP90AA1P07900 732 aaKnown RBP23.36■■□□□ 1.33
PHRF1-205ENST00000533464 ERCC6Q03468 1493 aa23.34■■□□□ 1.33
PHRF1-205ENST00000533464 SUPT16HQ9Y5B9 1047 aaKnown RBP23.29■■□□□ 1.32
PHRF1-205ENST00000533464 KNSTRNQ9Y448 316 aa23.28■■□□□ 1.32
PHRF1-205ENST00000533464 EIF4G1Q04637 1599 aaKnown RBP23.28■■□□□ 1.32
PHRF1-205ENST00000533464 PPP1R15AO75807 674 aaPredicted RBP23.27■■□□□ 1.32
PHRF1-205ENST00000533464 SMARCA2P51531 1590 aa23.26■■□□□ 1.31
PHRF1-205ENST00000533464 CDCA8Q53HL2 280 aa23.26■■□□□ 1.31
PHRF1-205ENST00000533464 WIZO95785 1651 aa23.25■■□□□ 1.31
PHRF1-205ENST00000533464 TIMELESSQ9UNS1 1208 aa23.24■■□□□ 1.31
PHRF1-205ENST00000533464 NBR1Q14596 966 aa23.24■■□□□ 1.31
PHRF1-205ENST00000533464 SETD5Q9C0A6 1442 aa23.22■■□□□ 1.31
PHRF1-205ENST00000533464 TOP2AP11388 1531 aaKnown RBP23.2■■□□□ 1.3
PHRF1-205ENST00000533464 TDRD9Q8NDG6 1382 aaKnown RBP23.19■■□□□ 1.3
PHRF1-205ENST00000533464 ARHGAP35Q9NRY4 1499 aa23.16■■□□□ 1.3
PHRF1-205ENST00000533464 DCAF11Q8TEB1 546 aa23.16■■□□□ 1.3
PHRF1-205ENST00000533464 CFAP53Q96M91 514 aa23.15■■□□□ 1.3
PHRF1-205ENST00000533464 ANP32BQ92688 251 aaKnown RBP23.11■■□□□ 1.29
PHRF1-205ENST00000533464 RAB3GAP2Q9H2M9 1393 aa23.1■■□□□ 1.29
PHRF1-205ENST00000533464 FOXD1Q16676 465 aa23.09■■□□□ 1.29
PHRF1-205ENST00000533464 MYH16Q9H6N6 1097 aa23.09■■□□□ 1.29
PHRF1-205ENST00000533464 PDS5BQ9NTI5 1447 aa23.09■■□□□ 1.29
PHRF1-205ENST00000533464 NEUROD2Q15784 382 aa23.08■■□□□ 1.29
PHRF1-205ENST00000533464 CC2D1BQ5T0F9 858 aaKnown RBP23.08■■□□□ 1.29
PHRF1-205ENST00000533464 PPM1GO15355 546 aaPredicted RBP23.07■■□□□ 1.28
PHRF1-205ENST00000533464 PLEKHG5O94827 1062 aa23.07■■□□□ 1.28
PHRF1-205ENST00000533464 C14orf37Q86TY3 774 aa23.06■■□□□ 1.28
PHRF1-205ENST00000533464 HSPA5P11021 654 aaKnown RBP23.06■■□□□ 1.28
PHRF1-205ENST00000533464 ARID4BQ4LE39 1312 aaPredicted RBP23.05■■□□□ 1.28
PHRF1-205ENST00000533464 FMN1Q68DA7 1419 aa23.05■■□□□ 1.28
PHRF1-205ENST00000533464 PKD2Q13563 968 aa23.05■■□□□ 1.28
PHRF1-205ENST00000533464 CADPSQ9ULU8 1353 aa23.04■■□□□ 1.28
PHRF1-205ENST00000533464 ZBTB7CA1YPR0 619 aa23.03■■□□□ 1.28
PHRF1-205ENST00000533464 RAPGEF2Q9Y4G8 1499 aa23.02■■□□□ 1.28
PHRF1-205ENST00000533464 PPP4R2Q9NY27 417 aa23.02■■□□□ 1.28
PHRF1-205ENST00000533464 ATAD2BQ9ULI0 1458 aa23.01■■□□□ 1.27
PHRF1-205ENST00000533464 TNNT2P45379 298 aaPredicted RBP23.01■■□□□ 1.27
PHRF1-205ENST00000533464 TMF1P82094 1093 aa23.01■■□□□ 1.27
PHRF1-205ENST00000533464 CCER2I3L3R5 266 aa23■■□□□ 1.27
PHRF1-205ENST00000533464 POGKQ9P215 609 aa23■■□□□ 1.27
PHRF1-205ENST00000533464 MPHOSPH9Q99550 1183 aa22.99■■□□□ 1.27
PHRF1-205ENST00000533464 ARXQ96QS3 562 aa22.98■■□□□ 1.27
PHRF1-205ENST00000533464 RUSC2Q8N2Y8 1516 aa22.96■■□□□ 1.27
PHRF1-205ENST00000533464 CARMIL2Q6F5E8 1435 aa22.96■■□□□ 1.27
PHRF1-205ENST00000533464 FHOD3Q2V2M9 1422 aa22.95■■□□□ 1.26
PHRF1-205ENST00000533464 NUDCQ9Y266 331 aa22.94■■□□□ 1.26
PHRF1-205ENST00000533464 MAPK8IP3Q9UPT6 1336 aa22.93■■□□□ 1.26
PHRF1-205ENST00000533464 DDRGK1Q96HY6 314 aa22.93■■□□□ 1.26
PHRF1-205ENST00000533464 FTSJ3Q8IY81 847 aaKnown RBP22.92■■□□□ 1.26
PHRF1-205ENST00000533464 B4GALNT3Q6L9W6 998 aa22.92■■□□□ 1.26
PHRF1-205ENST00000533464 KANK1Q14678 1352 aa22.92■■□□□ 1.26
PHRF1-205ENST00000533464 SMARCA4P51532 1647 aa22.91■■□□□ 1.26
PHRF1-205ENST00000533464 EIF5BO60841 1220 aaKnown RBP22.9■■□□□ 1.26
PHRF1-205ENST00000533464 BECN1Q14457 450 aa22.9■■□□□ 1.26
PHRF1-205ENST00000533464 FRAT1Q92837 279 aaPredicted RBP22.89■■□□□ 1.25
PHRF1-205ENST00000533464 NUP155O75694 1391 aa22.89■■□□□ 1.25
PHRF1-205ENST00000533464 LAS1LQ9Y4W2 734 aaKnown RBP22.89■■□□□ 1.25
PHRF1-205ENST00000533464 U2SURPO15042 1029 aaKnown RBP22.86■■□□□ 1.25
PHRF1-205ENST00000533464 GGT6Q6P531 493 aa22.85■■□□□ 1.25
PHRF1-205ENST00000533464 RGS3P49796 1198 aa22.85■■□□□ 1.25
PHRF1-205ENST00000533464 ANKRD30AQ9BXX3 1397 aa22.83■■□□□ 1.25
PHRF1-205ENST00000533464 A0A0G2JS52 829 aa22.83■■□□□ 1.25
PHRF1-205ENST00000533464 L3MBTL2Q969R5 705 aa22.83■■□□□ 1.25
PHRF1-205ENST00000533464 EFCAB2Q5VUJ9 269 aa22.82■■□□□ 1.24
PHRF1-205ENST00000533464 SAFB2Q14151 953 aaKnown RBP eCLIP22.8■■□□□ 1.24
PHRF1-205ENST00000533464 MLECQ14165 292 aa22.79■■□□□ 1.24
PHRF1-205ENST00000533464 SRPK2P78362 688 aaKnown RBP22.78■■□□□ 1.24
PHRF1-205ENST00000533464 HNRNPMP52272 730 aaKnown RBP eCLIP22.77■■□□□ 1.241e-6■■■□□ 17.1
PHRF1-205ENST00000533464 ANP32EQ9BTT0 268 aa22.77■■□□□ 1.24
PHRF1-205ENST00000533464 MORC1Q86VD1 984 aa22.76■■□□□ 1.23
PHRF1-205ENST00000533464 ROCK2O75116 1388 aaKnown RBP22.76■■□□□ 1.23
PHRF1-205ENST00000533464 KTN1Q86UP2 1357 aaKnown RBP22.74■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms