RNA–Protein interactions for RNA: ENST00000529308.5

USP35-203, Transcript of ubiquitin specific peptidase 35, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP35, Length 4,216 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP35-203ENST00000529308 KCNH8Q96L42 1107 aa21.13■□□□□ 0.97
USP35-203ENST00000529308 WIZO95785 1651 aa21.09■□□□□ 0.97
USP35-203ENST00000529308 MRS2Q9HD23 443 aa21.06■□□□□ 0.96
USP35-203ENST00000529308 RGL3Q3MIN7 710 aa21.05■□□□□ 0.96
USP35-203ENST00000529308 PLPPR3Q6T4P5 718 aa21.05■□□□□ 0.96
USP35-203ENST00000529308 RTL5Q5HYW3 569 aaPredicted RBP21.02■□□□□ 0.96
USP35-203ENST00000529308 CUX2O14529 1486 aa21.02■□□□□ 0.96
USP35-203ENST00000529308 TMC1Q8TDI8 760 aa21.01■□□□□ 0.95
USP35-203ENST00000529308 CARMIL1Q5VZK9 1371 aa21.01■□□□□ 0.95
USP35-203ENST00000529308 EIF4G2P78344 907 aaKnown RBP eCLIP20.99■□□□□ 0.95
USP35-203ENST00000529308 CANXP27824 592 aaKnown RBP20.98■□□□□ 0.95
USP35-203ENST00000529308 PLEKHD1A6NEE1 506 aa20.97■□□□□ 0.95
USP35-203ENST00000529308 NPM2Q86SE8 214 aaKnown RBP20.97■□□□□ 0.95
USP35-203ENST00000529308 CFDP1Q9UEE9 299 aaPredicted RBP20.97■□□□□ 0.95
USP35-203ENST00000529308 RUSC2Q8N2Y8 1516 aa20.96■□□□□ 0.95
USP35-203ENST00000529308 SLC24A1O60721 1099 aa20.95■□□□□ 0.94
USP35-203ENST00000529308 NPM1P06748 294 aaKnown RBP eCLIP20.95■□□□□ 0.94
USP35-203ENST00000529308 CCNB3Q8WWL7 1395 aa20.94■□□□□ 0.94
USP35-203ENST00000529308 TDRD9Q8NDG6 1382 aaKnown RBP20.9■□□□□ 0.94
USP35-203ENST00000529308 VPS8Q8N3P4 1428 aa20.89■□□□□ 0.93
USP35-203ENST00000529308 STAG3Q9UJ98 1225 aa20.87■□□□□ 0.93
USP35-203ENST00000529308 FOXD1Q16676 465 aa20.86■□□□□ 0.93
USP35-203ENST00000529308 CCDC136Q96JN2 1154 aa20.8■□□□□ 0.92
USP35-203ENST00000529308 ESF1Q9H501 851 aaKnown RBP20.78■□□□□ 0.92
USP35-203ENST00000529308 RAPGEF2Q9Y4G8 1499 aa20.78■□□□□ 0.92
USP35-203ENST00000529308 SUPT16HQ9Y5B9 1047 aaKnown RBP20.77■□□□□ 0.92
USP35-203ENST00000529308 NEFMP07197 916 aa20.75■□□□□ 0.91
USP35-203ENST00000529308 TOP2AP11388 1531 aaKnown RBP20.74■□□□□ 0.91
USP35-203ENST00000529308 CARD11Q9BXL7 1154 aa20.73■□□□□ 0.91
USP35-203ENST00000529308 EIF4G1Q04637 1599 aaKnown RBP20.73■□□□□ 0.91
USP35-203ENST00000529308 ANP32AP39687 249 aaKnown RBP20.72■□□□□ 0.91
USP35-203ENST00000529308 ATAD2BQ9ULI0 1458 aa20.71■□□□□ 0.91
USP35-203ENST00000529308 FHAD1B1AJZ9 1412 aa20.7■□□□□ 0.9
USP35-203ENST00000529308 ZBTB47Q9UFB7 747 aaPredicted RBP20.68■□□□□ 0.9
USP35-203ENST00000529308 RAB3GAP2Q9H2M9 1393 aa20.68■□□□□ 0.9
USP35-203ENST00000529308 WDR43Q15061 677 aaKnown RBP eCLIP20.67■□□□□ 0.9
USP35-203ENST00000529308 ERCC6Q03468 1493 aa20.67■□□□□ 0.9
USP35-203ENST00000529308 SMARCA2P51531 1590 aa20.66■□□□□ 0.9
USP35-203ENST00000529308 SETD5Q9C0A6 1442 aa20.63■□□□□ 0.89
USP35-203ENST00000529308 DCAF11Q8TEB1 546 aa20.62■□□□□ 0.89
USP35-203ENST00000529308 FHOD3Q2V2M9 1422 aa20.62■□□□□ 0.89
USP35-203ENST00000529308 CADPSQ9ULU8 1353 aa20.61■□□□□ 0.89
USP35-203ENST00000529308 PLEKHG5O94827 1062 aa20.61■□□□□ 0.89
USP35-203ENST00000529308 SMARCA4P51532 1647 aa20.59■□□□□ 0.89
USP35-203ENST00000529308 NBR1Q14596 966 aa20.58■□□□□ 0.89
USP35-203ENST00000529308 HSPA5P11021 654 aaKnown RBP20.56■□□□□ 0.88
USP35-203ENST00000529308 PKD2Q13563 968 aa20.54■□□□□ 0.88
USP35-203ENST00000529308 NEUROD2Q15784 382 aa20.54■□□□□ 0.88
USP35-203ENST00000529308 CC2D1BQ5T0F9 858 aaKnown RBP20.53■□□□□ 0.88
USP35-203ENST00000529308 TNNT2P45379 298 aaPredicted RBP20.53■□□□□ 0.88
USP35-203ENST00000529308 ARHGAP35Q9NRY4 1499 aa20.51■□□□□ 0.87
USP35-203ENST00000529308 MPHOSPH9Q99550 1183 aa20.5■□□□□ 0.87
USP35-203ENST00000529308 PPP1R15AO75807 674 aaPredicted RBP20.5■□□□□ 0.87
USP35-203ENST00000529308 KNSTRNQ9Y448 316 aa20.48■□□□□ 0.87
USP35-203ENST00000529308 B4GALNT3Q6L9W6 998 aa20.47■□□□□ 0.87
USP35-203ENST00000529308 PPM1GO15355 546 aaPredicted RBP20.46■□□□□ 0.87
USP35-203ENST00000529308 L3MBTL2Q969R5 705 aa20.45■□□□□ 0.86
USP35-203ENST00000529308 PDS5BQ9NTI5 1447 aa20.45■□□□□ 0.86
USP35-203ENST00000529308 TIMELESSQ9UNS1 1208 aa20.42■□□□□ 0.86
USP35-203ENST00000529308 DHX57Q6P158 1386 aaKnown RBP20.42■□□□□ 0.86
USP35-203ENST00000529308 GOLGA6L2Q8N9W4 650 aaPredicted RBP20.41■□□□□ 0.86
USP35-203ENST00000529308 HNRNPMP52272 730 aaKnown RBP eCLIP20.4■□□□□ 0.86
USP35-203ENST00000529308 FMN1Q68DA7 1419 aa20.39■□□□□ 0.86
USP35-203ENST00000529308 SAFB2Q14151 953 aaKnown RBP eCLIP20.38■□□□□ 0.85
USP35-203ENST00000529308 IGF1RP08069 1367 aa20.38■□□□□ 0.85
USP35-203ENST00000529308 GGT6Q6P531 493 aa20.36■□□□□ 0.85
USP35-203ENST00000529308 ARXQ96QS3 562 aa20.36■□□□□ 0.85
USP35-203ENST00000529308 NUP155O75694 1391 aa20.36■□□□□ 0.85
USP35-203ENST00000529308 JPH4Q96JJ6 628 aa20.35■□□□□ 0.85
USP35-203ENST00000529308 MLECQ14165 292 aa20.33■□□□□ 0.84
USP35-203ENST00000529308 ARID4BQ4LE39 1312 aaPredicted RBP20.33■□□□□ 0.84
USP35-203ENST00000529308 HSP90AA1P07900 732 aaKnown RBP20.32■□□□□ 0.84
USP35-203ENST00000529308 FANCD2Q9BXW9 1451 aa20.32■□□□□ 0.84
USP35-203ENST00000529308 ZBTB7CA1YPR0 619 aa20.31■□□□□ 0.84
USP35-203ENST00000529308 RAD54L2Q9Y4B4 1467 aa20.31■□□□□ 0.84
USP35-203ENST00000529308 C14orf37Q86TY3 774 aa20.3■□□□□ 0.84
USP35-203ENST00000529308 UPF2Q9HAU5 1272 aaKnown RBP20.29■□□□□ 0.84
USP35-203ENST00000529308 CCER2I3L3R5 266 aa20.28■□□□□ 0.84
USP35-203ENST00000529308 CDCA8Q53HL2 280 aa20.27■□□□□ 0.84
USP35-203ENST00000529308 FRAT1Q92837 279 aaPredicted RBP20.26■□□□□ 0.83
USP35-203ENST00000529308 PPP4R2Q9NY27 417 aa20.26■□□□□ 0.83
USP35-203ENST00000529308 RGS3P49796 1198 aa20.25■□□□□ 0.83
USP35-203ENST00000529308 TMF1P82094 1093 aa20.25■□□□□ 0.83
USP35-203ENST00000529308 ZNF644Q9H582 1327 aaPredicted RBP20.25■□□□□ 0.83
USP35-203ENST00000529308 POGKQ9P215 609 aa20.24■□□□□ 0.83
USP35-203ENST00000529308 LAS1LQ9Y4W2 734 aaKnown RBP20.23■□□□□ 0.83
USP35-203ENST00000529308 CARMIL2Q6F5E8 1435 aa20.23■□□□□ 0.83
USP35-203ENST00000529308 FGD5Q6ZNL6 1462 aa20.22■□□□□ 0.83
USP35-203ENST00000529308 U2SURPO15042 1029 aaKnown RBP20.22■□□□□ 0.83
USP35-203ENST00000529308 STK26Q9P289 416 aa20.22■□□□□ 0.83
USP35-203ENST00000529308 SOX12O15370 315 aa20.19■□□□□ 0.82
USP35-203ENST00000529308 NUTM2DQ5VT03 806 aaPredicted RBP20.19■□□□□ 0.82
USP35-203ENST00000529308 CFAP53Q96M91 514 aa20.19■□□□□ 0.82
USP35-203ENST00000529308 KIF3BO15066 747 aa20.18■□□□□ 0.82
USP35-203ENST00000529308 PHLDB1Q86UU1 1377 aa20.18■□□□□ 0.82
USP35-203ENST00000529308 EFCAB2Q5VUJ9 269 aa20.17■□□□□ 0.82
USP35-203ENST00000529308 ANKRD30AQ9BXX3 1397 aa20.16■□□□□ 0.82
USP35-203ENST00000529308 ST20-MTHFSA0A0A6YYL1 179 aa20.15■□□□□ 0.82
USP35-203ENST00000529308 ROCK2O75116 1388 aaKnown RBP20.14■□□□□ 0.81
USP35-203ENST00000529308 SRPK2P78362 688 aaKnown RBP20.13■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 118.6 ms