RNA–Protein interactions for RNA: ENST00000527916.1

CPSF1-203, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 506 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-203ENST00000527916 TOP2BQ02880 1626 aa18.84■□□□□ 0.61
CPSF1-203ENST00000527916 SUPT5HO00267 1087 aaKnown RBP18.83■□□□□ 0.6
CPSF1-203ENST00000527916 BIVM-ERCC5R4GMW8 1640 aa18.82■□□□□ 0.6
CPSF1-203ENST00000527916 MAPKBP1O60336 1514 aa18.79■□□□□ 0.6
CPSF1-203ENST00000527916 DIP2BQ9P265 1576 aa18.75■□□□□ 0.59
CPSF1-203ENST00000527916 KDM4FA0A1W2PPD8 638 aa18.74■□□□□ 0.59
CPSF1-203ENST00000527916 KDM6BO15054 1643 aa18.74■□□□□ 0.59
CPSF1-203ENST00000527916 RUSC2Q8N2Y8 1516 aa18.73■□□□□ 0.59
CPSF1-203ENST00000527916 ADCY10Q96PN6 1610 aa18.71■□□□□ 0.58
CPSF1-203ENST00000527916 TSPOAP1O95153 1857 aa18.67■□□□□ 0.58
CPSF1-203ENST00000527916 ILDR1Q86SU0 546 aaPredicted RBP18.65■□□□□ 0.58
CPSF1-203ENST00000527916 KIAA0586Q9BVV6 1533 aa18.64■□□□□ 0.57
CPSF1-203ENST00000527916 PTPRGP23470 1445 aa18.57■□□□□ 0.56
CPSF1-203ENST00000527916 IGF1RP08069 1367 aa18.54■□□□□ 0.56
CPSF1-203ENST00000527916 TTBK1Q5TCY1 1321 aaPredicted RBP18.52■□□□□ 0.56
CPSF1-203ENST00000527916 PLB1Q6P1J6 1458 aa18.52■□□□□ 0.55
CPSF1-203ENST00000527916 CUL7Q14999 1698 aa18.51■□□□□ 0.55
CPSF1-203ENST00000527916 CARMIL2Q6F5E8 1435 aa18.51■□□□□ 0.55
CPSF1-203ENST00000527916 KIF27Q86VH2 1401 aa18.51■□□□□ 0.55
CPSF1-203ENST00000527916 ABCC2Q92887 1545 aa18.51■□□□□ 0.55
CPSF1-203ENST00000527916 TNIKQ9UKE5 1360 aa18.5■□□□□ 0.55
CPSF1-203ENST00000527916 ADGRL1O94910 1474 aa18.49■□□□□ 0.55
CPSF1-203ENST00000527916 ASXL2Q76L83 1435 aa18.49■□□□□ 0.55
CPSF1-203ENST00000527916 GLI2P10070 1586 aa18.48■□□□□ 0.55
CPSF1-203ENST00000527916 PPRC1Q5VV67 1664 aaKnown RBP18.43■□□□□ 0.54
CPSF1-203ENST00000527916 UHRF1BP1LA0JNW5 1464 aa18.42■□□□□ 0.54
CPSF1-203ENST00000527916 CARMIL1Q5VZK9 1371 aa18.42■□□□□ 0.54
CPSF1-203ENST00000527916 UACAQ9BZF9 1416 aa18.4■□□□□ 0.54
CPSF1-203ENST00000527916 TEX14Q8IWB6 1497 aa18.39■□□□□ 0.54
CPSF1-203ENST00000527916 IQGAP2Q13576 1575 aa18.37■□□□□ 0.53
CPSF1-203ENST00000527916 HECW2Q9P2P5 1572 aa18.37■□□□□ 0.53
CPSF1-203ENST00000527916 EPRSP07814 1512 aaKnown RBP18.36■□□□□ 0.53
CPSF1-203ENST00000527916 COL17A1Q9UMD9 1497 aaPredicted RBP18.36■□□□□ 0.53
CPSF1-203ENST00000527916 MAP3K4Q9Y6R4 1608 aa18.34■□□□□ 0.53
CPSF1-203ENST00000527916 KDM5BQ9UGL1 1544 aa18.33■□□□□ 0.52
CPSF1-203ENST00000527916 DISP1Q96F81 1524 aa18.29■□□□□ 0.52
CPSF1-203ENST00000527916 ZCCHC11Q5TAX3 1644 aaKnown RBP18.27■□□□□ 0.51
CPSF1-203ENST00000527916 UGGT2Q9NYU1 1516 aa18.24■□□□□ 0.51
CPSF1-203ENST00000527916 WDR7Q9Y4E6 1490 aa18.24■□□□□ 0.51
CPSF1-203ENST00000527916 KIAA0556O60303 1618 aa18.2■□□□□ 0.5
CPSF1-203ENST00000527916 CD109Q6YHK3 1445 aa18.19■□□□□ 0.5
CPSF1-203ENST00000527916 RAPGEF2Q9Y4G8 1499 aa18.19■□□□□ 0.5
CPSF1-203ENST00000527916 MAGI3Q5TCQ9 1506 aa18.18■□□□□ 0.5
CPSF1-203ENST00000527916 FBXO41Q8TF61 875 aa18.18■□□□□ 0.5
CPSF1-203ENST00000527916 KCNH8Q96L42 1107 aa18.17■□□□□ 0.5
CPSF1-203ENST00000527916 CFAP43Q8NDM7 1665 aa18.15■□□□□ 0.5
CPSF1-203ENST00000527916 GOLGA3Q08378 1498 aa18.11■□□□□ 0.49
CPSF1-203ENST00000527916 FAM9AQ8IZU1 332 aaPredicted RBP18.09■□□□□ 0.49
CPSF1-203ENST00000527916 KIF21BO75037 1637 aa18.09■□□□□ 0.49
CPSF1-203ENST00000527916 ARAP3Q8WWN8 1544 aa18.06■□□□□ 0.48
CPSF1-203ENST00000527916 ABCA8O94911 1581 aa18.05■□□□□ 0.48
CPSF1-203ENST00000527916 PHLDB1Q86UU1 1377 aa18.03■□□□□ 0.48
CPSF1-203ENST00000527916 CTTNBP2Q8WZ74 1663 aa18.03■□□□□ 0.48
CPSF1-203ENST00000527916 PTPRMP28827 1452 aa18.01■□□□□ 0.47
CPSF1-203ENST00000527916 ADAMTSL3P82987 1691 aa17.97■□□□□ 0.47
CPSF1-203ENST00000527916 ARID4BQ4LE39 1312 aaPredicted RBP17.96■□□□□ 0.46
CPSF1-203ENST00000527916 ARID3CA6NKF2 412 aa17.95■□□□□ 0.46
CPSF1-203ENST00000527916 RAPGEF3O95398 923 aa17.94■□□□□ 0.46
CPSF1-203ENST00000527916 PCF11O94913 1555 aaKnown RBP17.92■□□□□ 0.46
CPSF1-203ENST00000527916 ABCA9Q8IUA7 1624 aa17.92■□□□□ 0.46
CPSF1-203ENST00000527916 ATP10BO94823 1461 aa17.92■□□□□ 0.46
CPSF1-203ENST00000527916 NEO1Q92859 1461 aa17.92■□□□□ 0.46
CPSF1-203ENST00000527916 BCORL1Q5H9F3 1711 aa17.89■□□□□ 0.46
CPSF1-203ENST00000527916 LMTK3Q96Q04 1460 aa17.88■□□□□ 0.45
CPSF1-203ENST00000527916 MADDQ8WXG6 1647 aa17.87■□□□□ 0.45
CPSF1-203ENST00000527916 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.87■□□□□ 0.45
CPSF1-203ENST00000527916 HNRNPUL2Q1KMD3 747 aaKnown RBP17.87■□□□□ 0.45
CPSF1-203ENST00000527916 P3H3Q8IVL6 736 aa17.87■□□□□ 0.45
CPSF1-203ENST00000527916 PRXQ9BXM0 1461 aa17.86■□□□□ 0.45
CPSF1-203ENST00000527916 FRMPD1Q5SYB0 1578 aa17.81■□□□□ 0.44
CPSF1-203ENST00000527916 POGZQ7Z3K3 1410 aa17.81■□□□□ 0.44
CPSF1-203ENST00000527916 RIMS1Q86UR5 1692 aaKnown RBP17.8■□□□□ 0.44
CPSF1-203ENST00000527916 ARHGEF40Q8TER5 1519 aa17.79■□□□□ 0.44
CPSF1-203ENST00000527916 HSPA2P54652 639 aa17.79■□□□□ 0.44
CPSF1-203ENST00000527916 DENND4BO75064 1496 aaPredicted RBP17.79■□□□□ 0.44
CPSF1-203ENST00000527916 RAPGEF6Q8TEU7 1601 aa17.79■□□□□ 0.44
CPSF1-203ENST00000527916 CERKQ8TCT0 537 aa17.78■□□□□ 0.44
CPSF1-203ENST00000527916 PLPPR3Q6T4P5 718 aa17.77■□□□□ 0.44
CPSF1-203ENST00000527916 FANCAO15360 1455 aa17.76■□□□□ 0.43
CPSF1-203ENST00000527916 AKNAQ7Z591 1439 aa17.76■□□□□ 0.43
CPSF1-203ENST00000527916 PLEKHD1A6NEE1 506 aa17.76■□□□□ 0.43
CPSF1-203ENST00000527916 FHOD3Q2V2M9 1422 aa17.74■□□□□ 0.43
CPSF1-203ENST00000527916 SAMD9Q5K651 1589 aa17.74■□□□□ 0.43
CPSF1-203ENST00000527916 RICTORQ6R327 1708 aa17.73■□□□□ 0.43
CPSF1-203ENST00000527916 CFAP74Q9C0B2 1584 aa17.73■□□□□ 0.43
CPSF1-203ENST00000527916 NUP153P49790 1475 aaKnown RBP17.71■□□□□ 0.43
CPSF1-203ENST00000527916 EFCAB5A4FU69 1503 aa17.69■□□□□ 0.42
CPSF1-203ENST00000527916 MAGI2Q86UL8 1455 aa17.69■□□□□ 0.42
CPSF1-203ENST00000527916 ZMYM4Q5VZL5 1548 aa17.68■□□□□ 0.42
CPSF1-203ENST00000527916 ZFYVE16Q7Z3T8 1539 aa17.68■□□□□ 0.42
CPSF1-203ENST00000527916 MLECQ14165 292 aa17.68■□□□□ 0.42
CPSF1-203ENST00000527916 CSRNP3Q8WYN3 585 aa17.66■□□□□ 0.42
CPSF1-203ENST00000527916 DISP3Q9P2K9 1392 aa17.66■□□□□ 0.42
CPSF1-203ENST00000527916 YEATS2Q9ULM3 1422 aa17.65■□□□□ 0.42
CPSF1-203ENST00000527916 DMRT2Q9Y5R5 561 aa17.65■□□□□ 0.42
CPSF1-203ENST00000527916 FER1L4A9Z1Z3 1794 aa17.64■□□□□ 0.41
CPSF1-203ENST00000527916 RANGAP1P46060 587 aaPredicted RBP17.64■□□□□ 0.41
CPSF1-203ENST00000527916 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.63■□□□□ 0.41
CPSF1-203ENST00000527916 TTC37Q6PGP7 1564 aa17.62■□□□□ 0.41
CPSF1-203ENST00000527916 SOCS7O14512 581 aa17.62■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms