RNA–Protein interactions for RNA: ENST00000522802.5

VPS13B-211, Transcript of vacuolar protein sorting 13 homolog B, humanhuman

TSL 3

Gene VPS13B, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13B-211ENST00000522802 VASPP50552 380 aaPredicted RBP13.17□□□□□ -0.3
VPS13B-211ENST00000522802 NESP48681 1621 aa13.13□□□□□ -0.31
VPS13B-211ENST00000522802 THOC2Q8NI27 1593 aaKnown RBP13.11□□□□□ -0.31
VPS13B-211ENST00000522802 NCAPD3P42695 1498 aa13.11□□□□□ -0.31
VPS13B-211ENST00000522802 ATAD2BQ9ULI0 1458 aa13.05□□□□□ -0.32
VPS13B-211ENST00000522802 HMGXB3Q12766 1538 aa13.04□□□□□ -0.32
VPS13B-211ENST00000522802 IFNLR1Q8IU57 520 aaPredicted RBP13.04□□□□□ -0.32
VPS13B-211ENST00000522802 MIER1Q8N108 512 aa13.03□□□□□ -0.32
VPS13B-211ENST00000522802 TRIM41Q8WV44 630 aa13.02□□□□□ -0.33
VPS13B-211ENST00000522802 SMARCA2P51531 1590 aa13.01□□□□□ -0.33
VPS13B-211ENST00000522802 LHX8Q68G74 356 aa13□□□□□ -0.33
VPS13B-211ENST00000522802 PLCD3Q8N3E9 789 aa13□□□□□ -0.33
VPS13B-211ENST00000522802 KIF21AQ7Z4S6 1674 aa12.99□□□□□ -0.33
VPS13B-211ENST00000522802 SMARCA4P51532 1647 aa12.99□□□□□ -0.33
VPS13B-211ENST00000522802 FARP1Q9Y4F1 1045 aaPredicted RBP12.99□□□□□ -0.33
VPS13B-211ENST00000522802 CD44P16070 742 aaKnown RBP12.98□□□□□ -0.33
VPS13B-211ENST00000522802 CREBZFQ9NS37 354 aa12.94□□□□□ -0.34
VPS13B-211ENST00000522802 LAMC3Q9Y6N6 1575 aa12.93□□□□□ -0.34
VPS13B-211ENST00000522802 PLEKHG5O94827 1062 aa12.92□□□□□ -0.34
VPS13B-211ENST00000522802 POTEIP0CG38 1075 aa12.92□□□□□ -0.34
VPS13B-211ENST00000522802 BAZ1BQ9UIG0 1483 aaKnown RBP12.91□□□□□ -0.34
VPS13B-211ENST00000522802 KLHL34Q8N239 644 aa12.89□□□□□ -0.35
VPS13B-211ENST00000522802 MNX1P50219 401 aaPredicted RBP12.86□□□□□ -0.35
VPS13B-211ENST00000522802 AMER1Q5JTC6 1135 aaPredicted RBP12.86□□□□□ -0.35
VPS13B-211ENST00000522802 ZBTB47Q9UFB7 747 aaPredicted RBP12.86□□□□□ -0.35
VPS13B-211ENST00000522802 PEG3Q9GZU2 1588 aa12.86□□□□□ -0.35
VPS13B-211ENST00000522802 BAZ1AQ9NRL2 1556 aaPredicted RBP12.83□□□□□ -0.36
VPS13B-211ENST00000522802 SPOCK2Q92563 424 aa12.83□□□□□ -0.36
VPS13B-211ENST00000522802 RTN4Q9NQC3 1192 aaKnown RBP12.83□□□□□ -0.36
VPS13B-211ENST00000522802 WDR62O43379 1518 aa12.8□□□□□ -0.36
VPS13B-211ENST00000522802 PDS5BQ9NTI5 1447 aa12.79□□□□□ -0.36
VPS13B-211ENST00000522802 CLCN6P51797 869 aa12.79□□□□□ -0.36
VPS13B-211ENST00000522802 MRC2Q9UBG0 1479 aa12.78□□□□□ -0.36
VPS13B-211ENST00000522802 ZNF579Q8NAF0 562 aaKnown RBP12.76□□□□□ -0.37
VPS13B-211ENST00000522802 ZRANB1Q9UGI0 708 aa12.75□□□□□ -0.37
VPS13B-211ENST00000522802 DCBLD2Q96PD2 775 aa12.74□□□□□ -0.37
VPS13B-211ENST00000522802 MROH2BQ7Z745 1585 aa12.73□□□□□ -0.37
VPS13B-211ENST00000522802 NUBP1P53384 320 aa12.72□□□□□ -0.37
VPS13B-211ENST00000522802 NPM1P06748 294 aaKnown RBP eCLIP12.7□□□□□ -0.38
VPS13B-211ENST00000522802 CADPSQ9ULU8 1353 aa12.68□□□□□ -0.38
VPS13B-211ENST00000522802 GALR2O43603 387 aaPredicted RBP12.66□□□□□ -0.38
VPS13B-211ENST00000522802 RIMBP3CA6NJZ7 1639 aa12.66□□□□□ -0.38
VPS13B-211ENST00000522802 RIMBP3BA6NNM3 1639 aa12.66□□□□□ -0.38
VPS13B-211ENST00000522802 RIMBP3Q9UFD9 1639 aa12.66□□□□□ -0.38
VPS13B-211ENST00000522802 PKD2Q13563 968 aa12.65□□□□□ -0.38
VPS13B-211ENST00000522802 CEP164Q9UPV0 1460 aa12.65□□□□□ -0.38
VPS13B-211ENST00000522802 RASEFQ8IZ41 740 aa12.62□□□□□ -0.39
VPS13B-211ENST00000522802 FANCD2Q9BXW9 1451 aa12.59□□□□□ -0.39
VPS13B-211ENST00000522802 WIZO95785 1651 aa12.59□□□□□ -0.39
VPS13B-211ENST00000522802 GSE1Q14687 1217 aa12.58□□□□□ -0.4
VPS13B-211ENST00000522802 PHF12Q96QT6 1004 aa12.58□□□□□ -0.4
VPS13B-211ENST00000522802 CIZ1Q9ULV3 898 aaPredicted RBP12.58□□□□□ -0.4
VPS13B-211ENST00000522802 DCAF8Q5TAQ9 597 aa12.56□□□□□ -0.4
VPS13B-211ENST00000522802 FAM212AQ96EL1 285 aa12.56□□□□□ -0.4
VPS13B-211ENST00000522802 URB2Q14146 1524 aaKnown RBP12.56□□□□□ -0.4
VPS13B-211ENST00000522802 PAK3O75914 559 aaPredicted RBP12.55□□□□□ -0.4
VPS13B-211ENST00000522802 ARHGEF11O15085 1522 aa12.55□□□□□ -0.4
VPS13B-211ENST00000522802 POTEB2H3BUK9 544 aa12.5□□□□□ -0.41
VPS13B-211ENST00000522802 ECM2O94769 699 aaPredicted RBP12.5□□□□□ -0.41
VPS13B-211ENST00000522802 CFTRP13569 1480 aa12.49□□□□□ -0.41
VPS13B-211ENST00000522802 OTUD5Q96G74 571 aa12.49□□□□□ -0.41
VPS13B-211ENST00000522802 TSPYL2Q9H2G4 693 aaPredicted RBP12.48□□□□□ -0.41
VPS13B-211ENST00000522802 ZNF608Q9ULD9 1512 aaPredicted RBP12.47□□□□□ -0.41
VPS13B-211ENST00000522802 CHRM1P11229 460 aaPredicted RBP12.45□□□□□ -0.42
VPS13B-211ENST00000522802 PELP1Q8IZL8 1130 aaKnown RBP12.45□□□□□ -0.42
VPS13B-211ENST00000522802 PRDM2Q13029 1718 aa12.45□□□□□ -0.42
VPS13B-211ENST00000522802 CCDC61Q9Y6R9 512 aa12.43□□□□□ -0.42
VPS13B-211ENST00000522802 EIF4G3O43432 1585 aaKnown RBP12.42□□□□□ -0.42
VPS13B-211ENST00000522802 CHD1O14646 1710 aa12.42□□□□□ -0.42
VPS13B-211ENST00000522802 ARAP1Q96P48 1450 aa12.41□□□□□ -0.42
VPS13B-211ENST00000522802 RGL2O15211 777 aa12.4□□□□□ -0.42
VPS13B-211ENST00000522802 MS4A3Q96HJ5 214 aa12.4□□□□□ -0.42
VPS13B-211ENST00000522802 PLSCR2Q9NRY7 297 aa12.4□□□□□ -0.42
VPS13B-211ENST00000522802 PYGBP11216 843 aa12.39□□□□□ -0.43
VPS13B-211ENST00000522802 IFT140Q96RY7 1462 aa12.38□□□□□ -0.43
VPS13B-211ENST00000522802 TOP2AP11388 1531 aaKnown RBP12.37□□□□□ -0.43
VPS13B-211ENST00000522802 CYB5RLQ6IPT4 315 aa12.36□□□□□ -0.43
VPS13B-211ENST00000522802 ASTLQ6HA08 431 aaPredicted RBP12.35□□□□□ -0.43
VPS13B-211ENST00000522802 RNF25Q96BH1 459 aaPredicted RBP12.34□□□□□ -0.43
VPS13B-211ENST00000522802 ATMINO43313 823 aaPredicted RBP12.33□□□□□ -0.44
VPS13B-211ENST00000522802 TOPBP1Q92547 1522 aa12.32□□□□□ -0.44
VPS13B-211ENST00000522802 METRNQ9UJH8 293 aa12.32□□□□□ -0.44
VPS13B-211ENST00000522802 KIF12Q96FN5 646 aa12.3□□□□□ -0.44
VPS13B-211ENST00000522802 TARBP1Q13395 1621 aaKnown RBP12.29□□□□□ -0.44
VPS13B-211ENST00000522802 RSF1Q96T23 1441 aaPredicted RBP12.28□□□□□ -0.44
VPS13B-211ENST00000522802 RIOK3O14730 519 aaKnown RBP12.28□□□□□ -0.44
VPS13B-211ENST00000522802 SLC39A7Q92504 469 aa12.28□□□□□ -0.44
VPS13B-211ENST00000522802 POTEJP0CG39 1038 aa12.27□□□□□ -0.45
VPS13B-211ENST00000522802 POTEMA6NI47 508 aa12.26□□□□□ -0.45
VPS13B-211ENST00000522802 MAP3K13O43283 966 aa12.26□□□□□ -0.45
VPS13B-211ENST00000522802 C7P10643 843 aa12.26□□□□□ -0.45
VPS13B-211ENST00000522802 SGIP1Q9BQI5 828 aa12.26□□□□□ -0.45
VPS13B-211ENST00000522802 DNMBPQ6XZF7 1577 aa12.26□□□□□ -0.45
VPS13B-211ENST00000522802 AQRO60306 1485 aaKnown RBP eCLIP12.25□□□□□ -0.45
VPS13B-211ENST00000522802 CLASP1Q7Z460 1538 aa12.23□□□□□ -0.45
VPS13B-211ENST00000522802 ZNF467Q7Z7K2 595 aaPredicted RBP12.23□□□□□ -0.45
VPS13B-211ENST00000522802 PCDHB13Q9Y5F0 798 aa12.23□□□□□ -0.45
VPS13B-211ENST00000522802 ATN1P54259 1190 aaPredicted RBP12.22□□□□□ -0.45
VPS13B-211ENST00000522802 POTEGQ6S5H5 508 aa12.21□□□□□ -0.45
VPS13B-211ENST00000522802 TAOK2Q9UL54 1235 aa12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms