RNA–Protein interactions for RNA: ENST00000522414.1

PVT1-213, Transcript of Pvt1 oncogene, humanhuman

TSL 2

Gene PVT1, Length 654 nt, Biotype lincRNA, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PVT1-213ENST00000522414 STAG3Q9UJ98 1225 aa15.81■□□□□ 0.12
PVT1-213ENST00000522414 SPDYE4A6NLX3 237 aa15.8■□□□□ 0.12
PVT1-213ENST00000522414 DCBLD2Q96PD2 775 aa15.79■□□□□ 0.12
PVT1-213ENST00000522414 GALR2O43603 387 aaPredicted RBP15.75■□□□□ 0.11
PVT1-213ENST00000522414 MNX1P50219 401 aaPredicted RBP15.66■□□□□ 0.1
PVT1-213ENST00000522414 PHF12Q96QT6 1004 aa15.66■□□□□ 0.1
PVT1-213ENST00000522414 NCAPD3P42695 1498 aa15.61■□□□□ 0.09
PVT1-213ENST00000522414 SMARCA4P51532 1647 aa15.57■□□□□ 0.08
PVT1-213ENST00000522414 POTEB2H3BUK9 544 aa15.57■□□□□ 0.08
PVT1-213ENST00000522414 HMGXB3Q12766 1538 aa15.54■□□□□ 0.08
PVT1-213ENST00000522414 ATAD2BQ9ULI0 1458 aa15.54■□□□□ 0.08
PVT1-213ENST00000522414 PAK3O75914 559 aaPredicted RBP15.54■□□□□ 0.08
PVT1-213ENST00000522414 OTUD5Q96G74 571 aa15.53■□□□□ 0.08
PVT1-213ENST00000522414 PEG3Q9GZU2 1588 aa15.53■□□□□ 0.08
PVT1-213ENST00000522414 NPM1P06748 294 aaKnown RBP eCLIP15.52■□□□□ 0.08
PVT1-213ENST00000522414 SMARCA2P51531 1590 aa15.52■□□□□ 0.07
PVT1-213ENST00000522414 PELP1Q8IZL8 1130 aaKnown RBP15.51■□□□□ 0.07
PVT1-213ENST00000522414 BAZ1AQ9NRL2 1556 aaPredicted RBP15.5■□□□□ 0.07
PVT1-213ENST00000522414 PROM2Q8N271 834 aa15.43■□□□□ 0.06
PVT1-213ENST00000522414 MS4A3Q96HJ5 214 aa15.42■□□□□ 0.06
PVT1-213ENST00000522414 DNAJC5Q9H3Z4 198 aa15.4■□□□□ 0.06
PVT1-213ENST00000522414 ERCC6Q03468 1493 aa15.36■□□□□ 0.05
PVT1-213ENST00000522414 ASTLQ6HA08 431 aaPredicted RBP15.36■□□□□ 0.05
PVT1-213ENST00000522414 MROH2BQ7Z745 1585 aa15.36■□□□□ 0.05
PVT1-213ENST00000522414 BAZ1BQ9UIG0 1483 aaKnown RBP15.34■□□□□ 0.05
PVT1-213ENST00000522414 ATMINO43313 823 aaPredicted RBP15.34■□□□□ 0.05
PVT1-213ENST00000522414 NESP48681 1621 aa15.34■□□□□ 0.05
PVT1-213ENST00000522414 PLSCR2Q9NRY7 297 aa15.33■□□□□ 0.04
PVT1-213ENST00000522414 TSPYL2Q9H2G4 693 aaPredicted RBP15.32■□□□□ 0.04
PVT1-213ENST00000522414 POTEJP0CG39 1038 aa15.31■□□□□ 0.04
PVT1-213ENST00000522414 CUX2O14529 1486 aa15.31■□□□□ 0.04
PVT1-213ENST00000522414 METRNQ9UJH8 293 aa15.3■□□□□ 0.04
PVT1-213ENST00000522414 CCDC61Q9Y6R9 512 aa15.29■□□□□ 0.04
PVT1-213ENST00000522414 LAMC3Q9Y6N6 1575 aa15.24■□□□□ 0.03
PVT1-213ENST00000522414 SLC39A7Q92504 469 aa15.23■□□□□ 0.03
PVT1-213ENST00000522414 C7P10643 843 aa15.22■□□□□ 0.03
PVT1-213ENST00000522414 KIF12Q96FN5 646 aa15.21■□□□□ 0.03
PVT1-213ENST00000522414 POTEMA6NI47 508 aa15.2■□□□□ 0.02
PVT1-213ENST00000522414 ATN1P54259 1190 aaPredicted RBP15.2■□□□□ 0.02
PVT1-213ENST00000522414 TRPC6Q9Y210 931 aa15.19■□□□□ 0.02
PVT1-213ENST00000522414 THOC2Q8NI27 1593 aaKnown RBP15.19■□□□□ 0.02
PVT1-213ENST00000522414 WIZO95785 1651 aa15.16■□□□□ 0.02
PVT1-213ENST00000522414 POTEGQ6S5H5 508 aa15.15■□□□□ 0.02
PVT1-213ENST00000522414 RASEFQ8IZ41 740 aa15.13■□□□□ 0.01
PVT1-213ENST00000522414 POTEFA5A3E0 1075 aa15.12■□□□□ 0.01
PVT1-213ENST00000522414 BMP2KQ9NSY1 1161 aaPredicted RBP15.12■□□□□ 0.01
PVT1-213ENST00000522414 MAP3K13O43283 966 aa15.11■□□□□ 0.01
PVT1-213ENST00000522414 CADPSQ9ULU8 1353 aa15.11■□□□□ 0.01
PVT1-213ENST00000522414 PDS5BQ9NTI5 1447 aa15.1■□□□□ 0.01
PVT1-213ENST00000522414 KIF21AQ7Z4S6 1674 aa15.1■□□□□ 0.01
PVT1-213ENST00000522414 MIER1Q8N108 512 aa15.09■□□□□ 0.01
PVT1-213ENST00000522414 LCE2DQ5TA82 110 aaPredicted RBP15.07■□□□□ 0
PVT1-213ENST00000522414 RSF1Q96T23 1441 aaPredicted RBP15.07■□□□□ 0
PVT1-213ENST00000522414 MAMSTRQ6ZN01 415 aa15.04■□□□□ -0
PVT1-213ENST00000522414 TOP2AP11388 1531 aaKnown RBP15.03■□□□□ -0
PVT1-213ENST00000522414 TIE1P35590 1138 aa15□□□□□ -0.01
PVT1-213ENST00000522414 WDR62O43379 1518 aa14.99□□□□□ -0.01
PVT1-213ENST00000522414 PLEKHG5O94827 1062 aa14.99□□□□□ -0.01
PVT1-213ENST00000522414 CFTRP13569 1480 aa14.98□□□□□ -0.01
PVT1-213ENST00000522414 COLQQ9Y215 455 aaPredicted RBP14.97□□□□□ -0.01
PVT1-213ENST00000522414 MRC2Q9UBG0 1479 aa14.96□□□□□ -0.01
PVT1-213ENST00000522414 TTLL13PA6NNM8 815 aa14.96□□□□□ -0.01
PVT1-213ENST00000522414 SCUBE2Q9NQ36 999 aa14.96□□□□□ -0.01
PVT1-213ENST00000522414 FAM163AQ96GL9 167 aaPredicted RBP14.93□□□□□ -0.02
PVT1-213ENST00000522414 PLCD3Q8N3E9 789 aa14.92□□□□□ -0.02
PVT1-213ENST00000522414 NUBP1P53384 320 aa14.91□□□□□ -0.02
PVT1-213ENST00000522414 FANCD2Q9BXW9 1451 aa14.9□□□□□ -0.02
PVT1-213ENST00000522414 CEP164Q9UPV0 1460 aa14.9□□□□□ -0.02
PVT1-213ENST00000522414 PRDM2Q13029 1718 aa14.9□□□□□ -0.02
PVT1-213ENST00000522414 PCDHB13Q9Y5F0 798 aa14.87□□□□□ -0.03
PVT1-213ENST00000522414 PCDH10Q9P2E7 1040 aa14.86□□□□□ -0.03
PVT1-213ENST00000522414 TRIM35Q9UPQ4 493 aa14.85□□□□□ -0.03
PVT1-213ENST00000522414 SEC24BO95487 1268 aa14.84□□□□□ -0.03
PVT1-213ENST00000522414 SGIP1Q9BQI5 828 aa14.84□□□□□ -0.03
PVT1-213ENST00000522414 IFNL1Q8IU54 200 aa14.83□□□□□ -0.04
PVT1-213ENST00000522414 CCDC88BA6NC98 1476 aa14.82□□□□□ -0.04
PVT1-213ENST00000522414 URB2Q14146 1524 aaKnown RBP14.79□□□□□ -0.04
PVT1-213ENST00000522414 IER5LQ5T953 404 aa14.78□□□□□ -0.04
PVT1-213ENST00000522414 TRIM41Q8WV44 630 aa14.78□□□□□ -0.04
PVT1-213ENST00000522414 ZBTB47Q9UFB7 747 aaPredicted RBP14.75□□□□□ -0.05
PVT1-213ENST00000522414 TMEM106CQ9BVX2 250 aa14.72□□□□□ -0.05
PVT1-213ENST00000522414 FAM212AQ96EL1 285 aa14.71□□□□□ -0.05
PVT1-213ENST00000522414 FKBP8Q14318 412 aa14.7□□□□□ -0.06
PVT1-213ENST00000522414 TOPBP1Q92547 1522 aa14.65□□□□□ -0.06
PVT1-213ENST00000522414 IRX5P78411 483 aaPredicted RBP14.64□□□□□ -0.07
PVT1-213ENST00000522414 SLAIN1Q8ND83 568 aa14.64□□□□□ -0.07
PVT1-213ENST00000522414 ABCC8Q09428 1581 aa14.64□□□□□ -0.07
PVT1-213ENST00000522414 DNMBPQ6XZF7 1577 aa14.64□□□□□ -0.07
PVT1-213ENST00000522414 ZNF608Q9ULD9 1512 aaPredicted RBP14.63□□□□□ -0.07
PVT1-213ENST00000522414 IFT140Q96RY7 1462 aa14.63□□□□□ -0.07
PVT1-213ENST00000522414 PYGBP11216 843 aa14.6□□□□□ -0.07
PVT1-213ENST00000522414 PLCG2P16885 1265 aa14.6□□□□□ -0.07
PVT1-213ENST00000522414 ST18O60284 1047 aa14.59□□□□□ -0.07
PVT1-213ENST00000522414 CDAN1Q8IWY9 1227 aa14.59□□□□□ -0.07
PVT1-213ENST00000522414 TARBP1Q13395 1621 aaKnown RBP14.57□□□□□ -0.08
PVT1-213ENST00000522414 DCAF8Q5TAQ9 597 aa14.57□□□□□ -0.08
PVT1-213ENST00000522414 PCDHB8Q9UN66 801 aa14.56□□□□□ -0.08
PVT1-213ENST00000522414 SUPT5HO00267 1087 aaKnown RBP14.54□□□□□ -0.08
PVT1-213ENST00000522414 AQRO60306 1485 aaKnown RBP eCLIP14.54□□□□□ -0.089e-7■■■■■ 33.4
PVT1-213ENST00000522414 EIF4G3O43432 1585 aaKnown RBP14.54□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 267.9 ms